| Tue Jul 18 10:30:20 CEST 2023 |
|---|
| ************ CLUSTER JOBS *************** |
| Jobs submitted by lcozzuto (qw = pending, r = running, Eqw = error) |
| ************ NEXTFLOW CACHED *************** |
| 1 |
| 4 chipseq:ADD_GENE_NAMES:addGeneNames |
| 4 chipseq:ANNOTATE_PEAKS:annotatePeaks |
| 4 chipseq:BED2BIGBED:bedToBigBed |
| 1 chipseq:BEDTOOLS_MERGE_MULTI:concatBed |
| 1 chipseq:BEDTOOLS_MERGE_MULTI:mergeBed |
| 4 chipseq:BEEDTOOLS_BEDTOFASTA:bedToFasta |
| 1 chipseq:BEEDTOOLS_BEDTOFASTA:PossiblyUnzipGenome |
| 4 chipseq:BEEDTOOLS_SHUFFLEBED:shuffleBed |
| 4 chipseq:BEEDTOOLS_SHUFTOFASTA:bedToFasta |
| 1 chipseq:BEEDTOOLS_SHUFTOFASTA:PossiblyUnzipGenome |
| 1 chipseq:BWA_ALL:INDEX:index |
| 6 chipseq:BWA_ALL:MAP:map |
| 1 chipseq:BWA_ALL_SPIKE:INDEX:index |
| 6 chipseq:BWA_ALL_SPIKE:MAP:map |
| 4 chipseq:convertSEACRTo6Bed |
| 1 chipseq:DEEPTOOLS_CALC_FINGERPRINGS:calcFingerPrints |
| 4 chipseq:DE_NOVO_MOTIFS:getDeNovoMotifs |
| 1 chipseq:EPIC_EFFECTIVE_GENOME_SIZE:CALC_AVG_READSIZE:calcIlluminaAvgReadSize |
| 12 chipseq:FASTQC_TRIM:fastQC |
| 4 chipseq:FEATURE_COUNT_SEACR:featureCounts |
| 1 chipseq:makeHub |
| 1 chipseq:MULTI_FEATURE_COUNT:featureCounts |
| 6 chipseq:PICARD_MARK_DUP:markDuplicates |
| 6 chipseq:PICARD_SORT_COORD:sortSamCoord |
| 6 chipseq:PICARD_SORT_NAME:sortSamName |
| 6 chipseq:QUALIMAP_QC:qualimap_bamqc |
| 1 chipseq:SAMTOOLS_FAIDX:faidx |
| 6 chipseq:SAMTOOLS_INDEX:indexBam |
| 6 chipseq:SAMTOOLS_PRIM_PERC:primaryCountPercStat |
| 4 chipseq:SEACR_CALL:peakCall |
| 6 chipseq:SEACR_MAKE_GRAPHS:makeBedGraph |
| 6 chipseq:SKEWER_TRIMMING_CHIP:trimWithSkewer |
| 4 chipseq:SORTBED:sortBed |
| 4 chipseq:subSample6Bed |
| 12 FASTQC:fastQC |
| *********** NEXTFLOW COMPLETED ************* |
| 8 chipseq:ADD_GENE_NAMES:addGeneNames |
| 8 chipseq:ANNOTATE_PEAKS:annotatePeaks |
| 8 chipseq:BED2BIGBED:bedToBigBed |
| 4 chipseq:BEDCLIP:bedClip |
| 2 chipseq:BEDTOOLS_MERGE_MULTI:concatBed |
| 2 chipseq:BEDTOOLS_MERGE_MULTI:mergeBed |
| 8 chipseq:BEEDTOOLS_BEDTOFASTA:bedToFasta |
| 8 chipseq:BEEDTOOLS_SHUFFLEBED:shuffleBed |
| 8 chipseq:BEEDTOOLS_SHUFTOFASTA:bedToFasta |
| 4 chipseq:convertEpicTo6Bed |
| 4 chipseq:convertMACSTo6Bed |
| 6 chipseq:DEEPTOOLS_BAMCOV_CHIP_SCALE:BamCoverageChipSeqScale |
| 4 chipseq:DEEPTOOLS_PLOT_COV_GENES:computeSingleMatrixForGenes |
| 4 chipseq:DEEPTOOLS_PLOT_COV_GENES:plotSingleGeneProfile |
| 4 chipseq:DEEPTOOLS_PLOT_COV_TSS:computeSingleMatrixForTSS |
| 4 chipseq:DEEPTOOLS_PLOT_COV_TSS:plotSingleTSSprofile |
| 8 chipseq:DE_NOVO_MOTIFS:getDeNovoMotifs |
| 4 chipseq:EPIC2_CALL_CHIP:peakCall |
| 1 chipseq:EPIC_EFFECTIVE_GENOME_SIZE:getEffectiveGenomeSize |
| 4 chipseq:FEATURE_COUNT_EPIC:featureCounts |
| 4 chipseq:FEATURE_COUNT_MACS:featureCounts |
| 4 chipseq:MACS2_CALL_CHIP:peakCall |
| 1 chipseq:makeFRIPreport; |
| 1 chipseq:MAKE_GENE_REPORT:makeAnnoReport; |
| 1 chipseq:makeTrackDB; |
| 2 chipseq:MULTI_FEATURE_COUNT:featureCounts |
| 8 chipseq:SORTBED:sortBed |
| 8 chipseq:subSample6Bed |
| 1 MULTIQC_REPORT:makeReport; |
| ************* NEXTFLOW FAILED ************** |
| ********** NEXTFLOW RESUBMITTED ************ |
| ************** WHERE IS FAILING? *********** |
| #################### |
| PIPELINE IS FINISHED |
| #################### |