Tue Jul 18 10:30:20 CEST 2023
************   CLUSTER JOBS   ***************
Jobs submitted by lcozzuto (qw = pending, r = running, Eqw = error)
************   NEXTFLOW CACHED   ***************
      1 
      4 chipseq:ADD_GENE_NAMES:addGeneNames
      4 chipseq:ANNOTATE_PEAKS:annotatePeaks
      4 chipseq:BED2BIGBED:bedToBigBed
      1 chipseq:BEDTOOLS_MERGE_MULTI:concatBed
      1 chipseq:BEDTOOLS_MERGE_MULTI:mergeBed
      4 chipseq:BEEDTOOLS_BEDTOFASTA:bedToFasta
      1 chipseq:BEEDTOOLS_BEDTOFASTA:PossiblyUnzipGenome
      4 chipseq:BEEDTOOLS_SHUFFLEBED:shuffleBed
      4 chipseq:BEEDTOOLS_SHUFTOFASTA:bedToFasta
      1 chipseq:BEEDTOOLS_SHUFTOFASTA:PossiblyUnzipGenome
      1 chipseq:BWA_ALL:INDEX:index
      6 chipseq:BWA_ALL:MAP:map
      1 chipseq:BWA_ALL_SPIKE:INDEX:index
      6 chipseq:BWA_ALL_SPIKE:MAP:map
      4 chipseq:convertSEACRTo6Bed
      1 chipseq:DEEPTOOLS_CALC_FINGERPRINGS:calcFingerPrints
      4 chipseq:DE_NOVO_MOTIFS:getDeNovoMotifs
      1 chipseq:EPIC_EFFECTIVE_GENOME_SIZE:CALC_AVG_READSIZE:calcIlluminaAvgReadSize
     12 chipseq:FASTQC_TRIM:fastQC
      4 chipseq:FEATURE_COUNT_SEACR:featureCounts
      1 chipseq:makeHub
      1 chipseq:MULTI_FEATURE_COUNT:featureCounts
      6 chipseq:PICARD_MARK_DUP:markDuplicates
      6 chipseq:PICARD_SORT_COORD:sortSamCoord
      6 chipseq:PICARD_SORT_NAME:sortSamName
      6 chipseq:QUALIMAP_QC:qualimap_bamqc
      1 chipseq:SAMTOOLS_FAIDX:faidx
      6 chipseq:SAMTOOLS_INDEX:indexBam
      6 chipseq:SAMTOOLS_PRIM_PERC:primaryCountPercStat
      4 chipseq:SEACR_CALL:peakCall
      6 chipseq:SEACR_MAKE_GRAPHS:makeBedGraph
      6 chipseq:SKEWER_TRIMMING_CHIP:trimWithSkewer
      4 chipseq:SORTBED:sortBed
      4 chipseq:subSample6Bed
     12 FASTQC:fastQC
***********   NEXTFLOW COMPLETED   *************
      8 chipseq:ADD_GENE_NAMES:addGeneNames
      8 chipseq:ANNOTATE_PEAKS:annotatePeaks
      8 chipseq:BED2BIGBED:bedToBigBed
      4 chipseq:BEDCLIP:bedClip
      2 chipseq:BEDTOOLS_MERGE_MULTI:concatBed
      2 chipseq:BEDTOOLS_MERGE_MULTI:mergeBed
      8 chipseq:BEEDTOOLS_BEDTOFASTA:bedToFasta
      8 chipseq:BEEDTOOLS_SHUFFLEBED:shuffleBed
      8 chipseq:BEEDTOOLS_SHUFTOFASTA:bedToFasta
      4 chipseq:convertEpicTo6Bed
      4 chipseq:convertMACSTo6Bed
      6 chipseq:DEEPTOOLS_BAMCOV_CHIP_SCALE:BamCoverageChipSeqScale
      4 chipseq:DEEPTOOLS_PLOT_COV_GENES:computeSingleMatrixForGenes
      4 chipseq:DEEPTOOLS_PLOT_COV_GENES:plotSingleGeneProfile
      4 chipseq:DEEPTOOLS_PLOT_COV_TSS:computeSingleMatrixForTSS
      4 chipseq:DEEPTOOLS_PLOT_COV_TSS:plotSingleTSSprofile
      8 chipseq:DE_NOVO_MOTIFS:getDeNovoMotifs
      4 chipseq:EPIC2_CALL_CHIP:peakCall
      1 chipseq:EPIC_EFFECTIVE_GENOME_SIZE:getEffectiveGenomeSize
      4 chipseq:FEATURE_COUNT_EPIC:featureCounts
      4 chipseq:FEATURE_COUNT_MACS:featureCounts
      4 chipseq:MACS2_CALL_CHIP:peakCall
      1 chipseq:makeFRIPreport;
      1 chipseq:MAKE_GENE_REPORT:makeAnnoReport;
      1 chipseq:makeTrackDB;
      2 chipseq:MULTI_FEATURE_COUNT:featureCounts
      8 chipseq:SORTBED:sortBed
      8 chipseq:subSample6Bed
      1 MULTIQC_REPORT:makeReport;
*************   NEXTFLOW FAILED   **************
**********   NEXTFLOW RESUBMITTED   ************
**************   WHERE IS FAILING?   ***********
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PIPELINE IS FINISHED
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