Flowcell  AC7KG2ACXX
Run Start  2015-07-24
Read Length  50 single end
HiSeq Sequencing Kit Trueseq v3

Sequencer Software	HiSeq Control Software	2.2.58
Gerald version     1.8

Alignment Report:

Legend:
Total - total reads considered ( random 10% of total reads sequenced )
Total Unique - total reads aligning to only a single location in the reference
U0 - # of unique hits with 0 mismatches
U1 - # of unique hits with 1 mismatches
U2 - # of unique hits with 2 mismatches
R012 - # of hits aligning to multiple location in the reference with 0,1 or 2 mismatches
NM - # of reads without a match to the reference

Mapping Algorithm : GEM_1.7.1 (build 1.819 (beta)) allowing up to 2 mismatches

Lane 78

Sample: TF-mix 3/7
Index: CAGATC
Lab ID: 10895_CAGATC
Application: ChIP Seq
Reference: M.musculus (GRCm38.dna)

Total	7667262
Total Unique	4522655	59.0%

U0	4119129	53.7%
U1	313767	4.1%
U2	89759	1.2%
R012	894255	11.7%
NM	1777865	23.2%

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Lane 78

Sample: TF-mix 3/7
Index: CTTGTA
Lab ID: 10895_CTTGTA
Application: ChIP Seq
Reference: M.musculus (GRCm38.dna)

Total	7373251
Total Unique	2728442	37.0%

U0	2391140	32.4%
U1	253551	3.4%
U2	83751	1.1%
R012	677542	9.2%
NM	3579379	48.5%

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Lane 78

Sample: TF-mix 3/7
Index: GCCAAT
Lab ID: 10895_GCCAAT
Application: ChIP Seq
Reference: M.musculus (GRCm38.dna)

Total	6722931
Total Unique	2305304	34.3%

U0	2026993	30.2%
U1	209901	3.1%
U2	68410	1.0%
R012	555348	8.3%
NM	3551594	52.8%

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Lane 78

Sample: TF-mix 3/7
Index: GGCTAC
Lab ID: 10895_GGCTAC
Application: ChIP Seq
Reference: M.musculus (GRCm38.dna)

Total	5425275
Total Unique	1603353	29.6%

U0	1418302	26.1%
U1	142359	2.6%
U2	42692	0.8%
R012	348154	6.4%
NM	3304507	60.9%

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Lane 78

Sample: TF-mix 3/7
Index: TAGCTT
Lab ID: 10895_TAGCTT
Application: ChIP Seq
Reference: M.musculus (GRCm38.dna)

Total	7208387
Total Unique	3085582	42.8%

U0	2707444	37.6%
U1	290981	4.0%
U2	87157	1.2%
R012	700608	9.7%
NM	3068360	42.6%

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Lane 78

Sample: TF-mix 3/7
Index: TTAGGC
Lab ID: 10895_TTAGGC
Application: ChIP Seq
Reference: M.musculus (GRCm38.dna)

Total	7414896
Total Unique	4436802	59.8%

U0	4043846	54.5%
U1	305925	4.1%
U2	87031	1.2%
R012	875247	11.8%
NM	1642117	22.1%

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