Flowcell AC574DACXX Run Start 2014-08-29 Read Length 50 single end HiSeq Sequencing Kit Trueseq v3 Sequencer Software HiSeq Control Software 2.0 Gerald version 1.8 Alignment Report: Legend: Total - total reads considered ( random 10% of total reads sequenced ) Total Unique - total reads aligning to only a single location in the reference U0 - # of unique hits with 0 mismatches U1 - # of unique hits with 1 mismatches U2 - # of unique hits with 2 mismatches R012 - # of hits aligning to multiple location in the reference with 0,1 or 2 mismatches NM - # of reads without a match to the reference Mapping Algorithm : GEM allowing up to 2 mismatches Lane 1 Sample: input B cells Index: ATCACG Lab ID: 7908 Application: ChIP Seq Reference: M.musculus (mm10) Total 1724984 Total Unique 1351826 78.4% U0 1254423 72.7% U1 79116 4.6% U2 18287 1.1% R012 300015 17.4% NM 59181 3.4% ------------------------------------------------ Lane 2 Sample: B K27 Index: CGATGT Lab ID: 7909 Application: ChIP Seq Reference: M.musculus (mm10) Total 7222099 Total Unique 5682249 78.7% U0 5230158 72.4% U1 370421 5.1% U2 81670 1.1% R012 1207610 16.7% NM 238242 3.3% ------------------------------------------------ Lane 2 Sample: B K4 Index: TTAGGC Lab ID: 7910 Application: ChIP Seq Reference: M.musculus (mm10) Total 5022386 Total Unique 3730048 74.3% U0 3418233 68.1% U1 252673 5.0% U2 59142 1.2% R012 871801 17.4% NM 344827 6.9% ------------------------------------------------ Lane 1 Sample: Ba input Index: TGACCA Lab ID: 7911 Application: ChIP Seq Reference: M.musculus (mm10) Total 1778512 Total Unique 1400045 78.7% U0 1306820 73.5% U1 75608 4.3% U2 17617 1.0% R012 305593 17.2% NM 58621 3.3% ------------------------------------------------ Lane 2 Sample: Ba K27 Index: ACAGTG Lab ID: 7912 Application: ChIP Seq Reference: M.musculus (mm10) Total 9181980 Total Unique 7101542 77.3% U0 6533542 71.2% U1 461554 5.0% U2 106446 1.2% R012 1618708 17.6% NM 324866 3.5% ------------------------------------------------ Lane 2 Sample: Ba K4 Index: GCCAAT Lab ID: 7913 Application: ChIP Seq Reference: M.musculus (mm10) Total 9540891 Total Unique 7391867 77.5% U0 6814326 71.4% U1 468534 4.9% U2 109007 1.1% R012 1673237 17.5% NM 345151 3.6% ------------------------------------------------ Lane 1 Sample: day1 input Index: CAGATC Lab ID: 7914 Application: ChIP Seq Reference: M.musculus (mm10) Total 1951554 Total Unique 1527907 78.3% U0 1424081 73.0% U1 84197 4.3% U2 19629 1.0% R012 339859 17.4% NM 67770 3.5% ------------------------------------------------ Lane 2 Sample: day1 K27 Index: ACTTGA Lab ID: 7915 Application: ChIP Seq Reference: M.musculus (mm10) Total 15053581 Total Unique 12068070 80.2% U0 11171123 74.2% U1 738709 4.9% U2 158238 1.1% R012 2305735 15.3% NM 489559 3.3% ------------------------------------------------ Lane 2 Sample: day1 K4 Index: GATCAG Lab ID: 7916 Application: ChIP Seq Reference: M.musculus (mm10) Total 20322286 Total Unique 16602328 81.7% U0 15428722 75.9% U1 970136 4.8% U2 203470 1.0% R012 2845586 14.0% NM 655231 3.2% ------------------------------------------------ Lane 1 Sample: day2 input Index: TAGCTT Lab ID: 7917 Application: ChIP Seq Reference: M.musculus (mm10) Total 2031200 Total Unique 1572969 77.4% U0 1472806 72.5% U1 81326 4.0% U2 18837 0.9% R012 371668 18.3% NM 69916 3.4% ------------------------------------------------ Lane 2 Sample: day2 K27 Index: GGCTAC Lab ID: 7918 Application: ChIP Seq Reference: M.musculus (mm10) Total 3519040 Total Unique 2853874 81.1% U0 2659540 75.6% U1 160817 4.6% U2 33517 1.0% R012 516660 14.7% NM 111709 3.2% ------------------------------------------------ Lane 2 Sample: day2 K4 Index: CTTGTA Lab ID: 7919 Application: ChIP Seq Reference: M.musculus (mm10) Total 6301113 Total Unique 5007660 79.5% U0 4642630 73.7% U1 300389 4.8% U2 64641 1.0% R012 986614 15.7% NM 224273 3.6% ------------------------------------------------