Information for 5-GAAGGTSCTG (Motif 4)

C A T G G C T A G T C A A T C G C A T G G A C T T A G C G A T C A C G T A T C G
Reverse Opposite:
T A G C C G T A C T A G A T C G C T G A G T A C A T G C C A G T C G A T G T A C
p-value:1e-20
log p-value:-4.681e+01
Information Content per bp:1.660
Number of Target Sequences with motif97.0
Percentage of Target Sequences with motif6.55%
Number of Background Sequences with motif1010.8
Percentage of Background Sequences with motif2.16%
Average Position of motif in Targets98.5 +/- 44.3bp
Average Position of motif in Background100.0 +/- 61.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tb_0230(RRM)/Trypanosoma_brucei-RNCMPT00230-PBM/HughesRNA

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GAAGGTSCTG
AGAAGGAC---
A C G T C A T G G C T A G T C A A T C G C A T G G A C T T A G C G A T C A C G T A T C G
C T G A A C T G C G T A C G T A A C T G A C T G C T G A T G A C A C G T A C G T A C G T

ttk/dmmpmm(Pollard)/fly

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GAAGGTSCTG--
CAAGGTCCTGGC
C A T G G C T A G T C A A T C G C A T G G A C T T A G C G A T C A C G T A T C G A C G T A C G T
T A G C T C A G C G T A A C T G C T A G A C G T A G T C A G T C A G C T A C T G T A C G A G T C

REF2(RRM)/Drosophila_melanogaster-RNCMPT00059-PBM/HughesRNA

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GAAGGTSCTG
AGAAGGC----
A C G T C A T G G C T A G T C A A T C G C A T G G A C T T A G C G A T C A C G T A T C G
C G T A A C T G C G T A C G T A C T A G T C A G G T A C A C G T A C G T A C G T A C G T

RARG(var.3)/MA1553.1/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GAAGGTSCTG-----
-AAGGTCATGACCTT
C A T G G C T A G T C A A T C G C A T G G A C T T A G C G A T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T
A C G T C T G A T C G A C A T G C A T G C G A T A G T C C T G A G A C T T C A G G C T A G T A C G T A C A G C T G A C T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GAAGGTSCTG---
VAGRACAKNCTGTBC
A C G T A C G T C A T G G C T A G T C A A T C G C A T G G A C T T A G C G A T C A C G T A T C G A C G T A C G T A C G T
T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

ttk/dmmpmm(Bigfoot)/fly

Match Rank:6
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GAAGGTSCTG
---GGTCCTG
C A T G G C T A G T C A A T C G C A T G G A C T T A G C G A T C A C G T A T C G
A C G T A C G T A C G T A C T G C T A G A C G T A G T C A G T C A G C T A C T G

POL008.1_DCE_S_I/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GAAGGTSCTG
NGAAGC-----
A C G T C A T G G C T A G T C A A T C G C A T G G A C T T A G C G A T C A C G T A T C G
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T

RARB(var.3)/MA1552.1/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GAAGGTSCTG-----
-AAGGTCATGACCTT
C A T G G C T A G T C A A T C G C A T G G A C T T A G C G A T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T
A C G T C T G A T C G A A C T G C A T G A G C T A G T C C T G A G A C T T C A G T G C A G T A C G A T C A G C T G A C T

ttk/dmmpmm(SeSiMCMC)/fly

Match Rank:9
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GAAGGTSCTG-
---GGTCCTGC
C A T G G C T A G T C A A T C G C A T G G A C T T A G C G A T C A C G T A T C G A C G T
A C G T A C G T A C G T A C T G C T A G A C G T A G T C A G T C A G C T A C T G T A G C

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GAAGGTSCTG--
--ACTTCCTGTT
C A T G G C T A G T C A A T C G C A T G G A C T T A G C G A T C A C G T A T C G A C G T A C G T
A C G T A C G T T C G A A G T C C G A T C G A T A G T C A G T C A C G T T A C G G A C T A C G T