Information for 4-GTGACC (Motif 9)

C T A G A C G T A C T G C G T A A G T C A G T C
Reverse Opposite:
A C T G A C T G A C G T A G T C G T C A A G T C
p-value:1e-2
log p-value:-5.518e+00
Information Content per bp:1.923
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif23.73%
Number of Background Sequences with motif5456.2
Percentage of Background Sequences with motif10.96%
Average Position of motif in Targets80.8 +/- 50.3bp
Average Position of motif in Background99.2 +/- 62.7bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RTG3/Literature(Harbison)/Yeast

Match Rank:1
Score:0.99
Offset:0
Orientation:reverse strand
Alignment:GTGACC
GTGACC
C T A G A C G T A C T G C G T A A G T C A G T C
A C T G A C G T A C T G C G T A A G T C A G T C

NR2C1/MA1535.1/Jaspar

Match Rank:2
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:GTGACC---
NTGACCTCN
C T A G A C G T A C T G C G T A A G T C A G T C A C G T A C G T A C G T
C T A G A G C T A T C G G T C A A G T C G T A C A G C T G A T C C A T G

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.91
Offset:1
Orientation:reverse strand
Alignment:GTGACC-
-TGACCT
C T A G A C G T A C T G C G T A A G T C A G T C A C G T
A C G T A C G T C A T G G C T A G T A C G T A C G A C T

NR2C2(var.2)/MA1536.1/Jaspar

Match Rank:4
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:GTGACC--
NTGACCTN
C T A G A C G T A C T G C G T A A G T C A G T C A C G T A C G T
C G T A A G C T T C A G G T C A G T A C T G A C A G C T A G T C

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:5
Score:0.88
Offset:1
Orientation:reverse strand
Alignment:GTGACC---
-TGACCYCT
C T A G A C G T A C T G C G T A A G T C A G T C A C G T A C G T A C G T
A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer

Match Rank:6
Score:0.88
Offset:1
Orientation:reverse strand
Alignment:GTGACC-------
-TGACCYYTGVYN
C T A G A C G T A C T G C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C A G T C G A G T A C A G T C A G C T A G T C C G A T C A T G T G C A A G T C A G T C

Hr46/dmmpmm(Bergman)/fly

Match Rank:7
Score:0.87
Offset:1
Orientation:reverse strand
Alignment:GTGACC-
-TGACCC
C T A G A C G T A C T G C G T A A G T C A G T C A C G T
A C G T A C G T A C T G C G T A A G T C A G T C A G T C

usp/dmmpmm(Bergman)/fly

Match Rank:8
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-GTGACC--
CGTGACCCC
A C G T C T A G A C G T A C T G C G T A A G T C A G T C A C G T A C G T
A T G C C T A G A G C T T A C G C G T A A G T C A G T C A G T C A G T C

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.85
Offset:1
Orientation:reverse strand
Alignment:GTGACC---
-TGACCTYA
C T A G A C G T A C T G C G T A A G T C A G T C A C G T A C G T A C G T
A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer

Match Rank:10
Score:0.85
Offset:1
Orientation:reverse strand
Alignment:GTGACC-------
-TGACCTYTGVMC
C T A G A C G T A C T G C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T T C A G T G C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A T G A C A T G C