Information for 3-GAAGAGGTAC (Motif 3)

A T C G G C T A C G T A T A C G T G C A T C A G C T A G C G A T G T C A T G A C
Reverse Opposite:
A C T G C A G T G C T A G A T C A G T C A C G T A T G C G C A T C G A T T A G C
p-value:1e-41
log p-value:-9.601e+01
Information Content per bp:1.531
Number of Target Sequences with motif811.0
Percentage of Target Sequences with motif40.39%
Number of Background Sequences with motif12292.5
Percentage of Background Sequences with motif26.38%
Average Position of motif in Targets101.7 +/- 50.0bp
Average Position of motif in Background100.0 +/- 64.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AtSPL8(SBP)/Arabidopsis thaliana/AthaMap

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GAAGAGGTAC------
AATAAGGTACANANAA
A T C G G C T A C G T A T A C G T G C A T C A G C T A G C G A T G T C A T G A C A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C G T A C G A T C T G A C G T A C T A G A C T G A C G T C G T A A G T C C T G A C G A T G C T A G C T A G C T A G C T A

SPL8/MA0578.1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GAAGAGGTAC------
AATAAGGTACANANAA
A T C G G C T A C G T A T A C G T G C A T C A G C T A G C G A T G T C A T G A C A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C G T A C G A T C T G A C G T A C T A G A C T G A C G T C G T A A G T C C T G A C G A T G C T A G C T A G C T A G C T A

TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer

Match Rank:3
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GAAGAGGTAC-
NNDDGAGGAGGWNNN
A C G T A C G T A C G T A C G T A T C G G C T A C G T A T A C G T G C A T C A G C T A G C G A T G T C A T G A C A C G T
C T A G T C A G C T G A C T G A C T A G C T G A C A T G C A T G C T G A C T A G C T A G C G T A C T A G C G T A G T C A

AtSPL3(SBP)/Arabidopsis thaliana/AthaMap

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GAAGAGGTAC------
NAANNNGTACGGNAAN
A T C G G C T A C G T A T A C G T G C A T C A G C T A G C G A T G T C A T G A C A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C G T A C G T A C T G A C G A T C G A T A C T G A C G T C G T A A G T C A C T G C A T G G A T C G C A T G C T A G A C T

ZNF652/MA1657.1/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GAAGAGGTAC-
GAAAGAGTTAAA
A C G T A T C G G C T A C G T A T A C G T G C A T C A G C T A G C G A T G T C A T G A C A C G T
A C T G T C G A T G C A C T G A A T C G C T G A C T A G C G A T A G C T G C T A T G C A G C T A

SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer

Match Rank:6
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:GAAGAGGTAC--
----AAGTACAV
A T C G G C T A C G T A T A C G T G C A T C A G C T A G C G A T G T C A T G A C A C G T A C G T
A C G T A C G T A C G T A C G T G C T A T G C A A C T G A C G T C G T A A G T C C T G A T C G A

POL008.1_DCE_S_I/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GAAGAGGTAC
NGAAGC-----
A C G T A T C G G C T A C G T A T A C G T G C A T C A G C T A G C G A T G T C A T G A C
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T

TEIL(AP2/EREBP)/Nicotiana tabacum/AthaMap

Match Rank:8
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GAAGAGGTAC--
----AGGTACAT
A T C G G C T A C G T A T A C G T G C A T C A G C T A G C G A T G T C A T G A C A C G T A C G T
A C G T A C G T A C G T A C G T T C G A T A C G T C A G A G C T C G T A A T G C C T G A A C G T

Unknown4/Arabidopsis-Promoters/Homer

Match Rank:9
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GAAGAGGTAC
RAAGAMGAMG---
A C G T A C G T A C G T A T C G G C T A C G T A T A C G T G C A T C A G C T A G C G A T G T C A T G A C
C T A G C T G A T G C A C T A G C G T A G T A C C T A G T G C A G T C A T A C G A C G T A C G T A C G T

TRA2(RRM)/Drosophila_melanogaster-RNCMPT00078-PBM/HughesRNA

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GAAGAGGTAC
GAAGAAG---
A T C G G C T A C G T A T A C G T G C A T C A G C T A G C G A T G T C A T G A C
T C A G C G T A C T G A A T C G C G T A C G T A A T C G A C G T A C G T A C G T