Information for 3-CATGGC (Motif 6)

A G T C C G T A A C G T A C T G A C T G G T A C
Reverse Opposite:
A C T G A G T C A G T C C G T A A C G T A C T G
p-value:1e-2
log p-value:-6.176e+00
Information Content per bp:1.938
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif27.63%
Number of Background Sequences with motif6736.5
Percentage of Background Sequences with motif14.45%
Average Position of motif in Targets119.9 +/- 45.2bp
Average Position of motif in Background99.8 +/- 61.9bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.48
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tv_0259(RRM)/Trichomonas_vaginalis-RNCMPT00259-PBM/HughesRNA

Match Rank:1
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-CATGGC
NCATGGT
A C G T A G T C C G T A A C G T A C T G A C T G G T A C
G A C T A G T C C G T A A C G T A C T G C T A G A C G T

YY2/MA0748.2/Jaspar

Match Rank:2
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-CATGGC----
AGATGGCGGCG
A C G T A G T C C G T A A C G T A C T G A C T G G T A C A C G T A C G T A C G T A C G T
G T C A T A C G T C G A A G C T T A C G C T A G G A T C A T C G T A C G G T A C T A C G

pho/MA1460.1/Jaspar

Match Rank:3
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-CATGGC----
AAATGGCCGCC
A C G T A G T C C G T A A C G T A C T G A C T G G T A C A C G T A C G T A C G T A C G T
G T C A C T G A T G C A A G C T A T C G A C T G G T A C A T G C C T A G G T A C A G T C

pho/dmmpmm(Bergman)/fly

Match Rank:4
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:CATGGC
AATGGC
A G T C C G T A A C G T A C T G A C T G G T A C
C G T A C G T A A C G T A C T G A C T G A G T C

LEC2/MA0581.1/Jaspar

Match Rank:5
Score:0.74
Offset:-5
Orientation:reverse strand
Alignment:-----CATGGC
ATGTGCATGNN
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G G T A C
C G T A C G A T C A T G A G C T A C T G A G T C C G T A A C G T C T A G A T G C G T C A

RIM101/MA0368.1/Jaspar

Match Rank:6
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:CATGGC-
CTTGGCG
A G T C C G T A A C G T A C T G A C T G G T A C A C G T
A G T C A C G T A C G T A C T G A C T G A G T C C T A G

EIF-2ALPHA(S1)/Drosophila_melanogaster-RNCMPT00273-PBM/HughesRNA

Match Rank:7
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CATGGC
AGCATGC-
A C G T A C G T A G T C C G T A A C G T A C T G A C T G G T A C
C G T A A C T G A G T C C G T A A C G T A C T G T G A C A C G T

AtLEC2(ABI3/VP1)/Arabidopsis thaliana/AthaMap

Match Rank:8
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----CATGGC
TTTGCATGGA
A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G G T A C
A C G T A C G T A C G T A C T G A G T C C G T A A C G T A C T G C T A G G T C A

A2BP1(RRM)/Drosophila_melanogaster-RNCMPT00123-PBM/HughesRNA

Match Rank:9
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---CATGGC
NTGCATGC-
A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G G T A C
C T A G C G A T A C T G A G T C C G T A A C G T A C T G T G A C A C G T

MXI1/MA1108.2/Jaspar

Match Rank:10
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----CATGGC
GACACATGGC
A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G G T A C
C T A G T C G A G A T C C T G A A G T C C T G A A G C T C T A G A C T G A T G C