Information for 6-GAGSWGSTGS (Motif 5)

A T C G C G T A A C T G A T C G C G A T A C T G T A G C C G A T A C T G T A C G
Reverse Opposite:
A T G C A G T C C G T A A T C G A G T C C G T A A T G C A G T C C G A T A T G C
p-value:1e-20
log p-value:-4.643e+01
Information Content per bp:1.726
Number of Target Sequences with motif548.0
Percentage of Target Sequences with motif36.98%
Number of Background Sequences with motif12129.6
Percentage of Background Sequences with motif25.95%
Average Position of motif in Targets98.0 +/- 46.2bp
Average Position of motif in Background100.5 +/- 70.5bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.44
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TCF12(var.2)/MA1648.1/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GAGSWGSTGS-
NNGCAGGTGNN
A T C G C G T A A C T G A T C G C G A T A C T G T A G C C G A T A C T G T A C G A C G T
T A G C T C A G T C A G A G T C T C G A A T C G T A C G A G C T T C A G A T G C A T C G

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GAGSWGSTGS--
SDGCAGGTGCNS
A T C G C G T A A C T G A T C G C G A T A C T G T A G C C G A T A C T G T A C G A C G T A C G T
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

TCF3/MA0522.3/Jaspar

Match Rank:3
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GAGSWGSTGS-
NNGCAGGTGNN
A T C G C G T A A C T G A T C G C G A T A C T G T A G C C G A T A C T G T A C G A C G T
T A C G A T C G T C A G A G T C T C G A A T C G T A C G A G C T T A C G A T G C A T C G

ASCL1(var.2)/MA1631.1/Jaspar

Match Rank:4
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GAGSWGSTGS--
NNGGCAGGTGCNN
A C G T A T C G C G T A A C T G A T C G C G A T A C T G T A G C C G A T A C T G T A C G A C G T A C G T
T A C G T A C G C T A G T A C G A T G C T C G A A T C G T A C G G A C T T A C G A T G C G C A T T A C G

PB0003.1_Ascl2_1/Jaspar

Match Rank:5
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---GAGSWGSTGS----
NNNNAGCAGCTGCTGAN
A C G T A C G T A C G T A T C G C G T A A C T G A T C G C G A T A C T G T A G C C G A T A C T G T A C G A C G T A C G T A C G T A C G T
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G

PL0002.1_hlh-2::hlh-3/Jaspar

Match Rank:6
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---GAGSWGSTGS----
NATNAGCAGGTGTTNNN
A C G T A C G T A C G T A T C G C G T A A C T G A T C G C G A T A C T G T A G C C G A T A C T G T A C G A C G T A C G T A C G T A C G T
C T A G C T G A A C G T C A G T T C G A T C A G A G T C C G T A A C T G T C A G A C G T A C T G A C G T G A C T T G C A G A T C A C G T

Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer

Match Rank:7
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GAGSWGSTGS-
SSRGCAGCTGCH
A C G T A T C G C G T A A C T G A T C G C G A T A C T G T A G C C G A T A C T G T A C G A C G T
T A C G T A C G C T A G T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G T C G A C T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GAGSWGSTGS
CAGCAGCTGN
A T C G C G T A A C T G A T C G C G A T A C T G T A G C C G A T A C T G T A C G
T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T

SeqBias: GCW-triplet

Match Rank:9
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GAGSWGSTGS-
GCAGCAGCAGCA
A C G T A T C G C G T A A C T G A T C G C G A T A C T G T A G C C G A T A C T G T A C G A C G T
A C T G A G T C C G A T A C T G A G T C C G A T A C T G A G T C C G A T A C T G A G T C C G A T

Ascl2/MA0816.1/Jaspar

Match Rank:10
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GAGSWGSTGS-
-AGCAGCTGCT
A T C G C G T A A C T G A T C G C G A T A C T G T A G C C G A T A C T G T A C G A C G T
A C G T C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T