Information for 1-TCGTCG (Motif 3)

A G C T A G T C A C T G C A G T A G T C A C T G
Reverse Opposite:
G T A C A C T G G T C A G T A C C T A G C T G A
p-value:1e-7
log p-value:-1.744e+01
Information Content per bp:1.818
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif48.68%
Number of Background Sequences with motif9415.2
Percentage of Background Sequences with motif20.19%
Average Position of motif in Targets114.8 +/- 50.7bp
Average Position of motif in Background100.8 +/- 76.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RSF1(RRM)/Drosophila_melanogaster-RNCMPT00061-PBM/HughesRNA

Match Rank:1
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:TCGTCG-
TCGTCGT
A G C T A G T C A C T G C A G T A G T C A C T G A C G T
A G C T A G T C A C T G A C G T A G T C A C T G A C G T

CG2950(KH)/Drosophila_melanogaster-RNCMPT00007-PBM/HughesRNA

Match Rank:2
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-TCGTCG
NTCGTTG
A C G T A G C T A G T C A C T G C A G T A G T C A C T G
A C G T A C G T A G T C A C T G A C G T A G C T A C T G

Rbm4.3(RRM)/Danio_rerio-RNCMPT00248-PBM/HughesRNA

Match Rank:3
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:TCGTCG--
TCGTCGTN
A G C T A G T C A C T G C A G T A G T C A C T G A C G T A C G T
A C G T A G T C A C T G A G C T A G T C A C T G A G C T A G C T

RBM45(RRM)/Homo_sapiens-RNCMPT00241-PBM/HughesRNA

Match Rank:4
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--TCGTCG
TGTCGTC-
A C G T A C G T A G C T A G T C A C T G C A G T A G T C A C T G
A C G T A C T G A G C T G T A C A T C G A C G T A G T C A C G T

SRSF7(RRM,Znf)/Homo_sapiens-RNCMPT00073-PBM/HughesRNA

Match Rank:5
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:TCGTCG--
NCGTCGTC
A G C T A G T C A C T G C A G T A G T C A C T G A C G T A C G T
A G T C A G T C A C T G A C G T A G T C A C T G A C G T A G T C

Unknown4/Arabidopsis-Promoters/Homer

Match Rank:6
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--TCGTCG--
CKTCKTCTTY
A C G T A C G T A G C T A G T C A C T G C A G T A G T C A C T G A C G T A C G T
A T G C C A G T A C G T A G T C C A T G A C G T A G T C A C G T A G C T G A T C

PB0179.1_Sp100_2/Jaspar

Match Rank:7
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-TCGTCG--------
TCCGTCGCTTAAAAG
A C G T A G C T A G T C A C T G C A G T A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T G C G A T C T C A G G C A T T G A C A C T G G A T C A C G T C A G T G C T A C G T A G C T A C G T A A C T G

ARF7/MA1698.1/Jaspar

Match Rank:8
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---TCGTCG-----
NCCTTGTCGGCAGT
A C G T A C G T A C G T A G C T A G T C A C T G C A G T A G T C A C T G A C G T A C G T A C G T A C G T A C G T
C T G A A T G C A T G C A C G T A G C T T A C G A G C T A T G C A C T G A T C G A T G C C G T A C T A G A C G T

MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer

Match Rank:9
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--TCGTCG----
TTTTGTCGTTTW
A C G T A C G T A G C T A G T C A C T G C A G T A G T C A C T G A C G T A C G T A C G T A C G T
G A C T A C G T A G C T G A C T A C T G C A G T A G T C A T C G A C G T G C A T G C A T G C A T

CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer

Match Rank:10
Score:0.72
Offset:-6
Orientation:reverse strand
Alignment:------TCGTCG---
NNNNNNWHGTCGGYN
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A G T C A C T G C A G T A G T C A C T G A C G T A C G T A C G T
C G T A G C T A C G T A C G T A G A C T C G A T C G T A G A C T A C T G A C G T A G T C A C T G C T A G A G T C T C G A