Information for 4-CAATATATRCWGGT (Motif 4)

G T A C G C T A T C G A G C A T C G T A G A C T T C G A G A C T C T A G A G T C G C T A A C T G T A C G C G A T
Reverse Opposite:
G C T A A T G C T G A C C G A T T C A G A G T C C T G A A G C T C T G A C G A T C G T A A C G T C A G T A C T G
p-value:1e-6
log p-value:-1.497e+01
Information Content per bp:1.589
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif12.35%
Number of Background Sequences with motif724.1
Percentage of Background Sequences with motif1.46%
Average Position of motif in Targets82.4 +/- 57.1bp
Average Position of motif in Background103.4 +/- 53.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MOT2/MA0379.1/Jaspar

Match Rank:1
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CAATATATRCWGGT
--ATATA-------
G T A C G C T A T C G A G C A T C G T A G A C T T C G A G A C T C T A G A G T C G C T A A C T G T A C G C G A T
A C G T A C G T G C T A A C G T C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RBMS3(RRM)/Homo_sapiens-RNCMPT00057-PBM/HughesRNA

Match Rank:2
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CAATATATRCWGGT
--ATATATA-----
G T A C G C T A T C G A G C A T C G T A G A C T T C G A G A C T C T A G A G T C G C T A A C T G T A C G C G A T
A C G T A C G T G T C A A G C T C G T A A C G T C G T A A C G T G T C A A C G T A C G T A C G T A C G T A C G T

RBMS3(RRM)/Homo_sapiens-RNCMPT00173-PBM/HughesRNA

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CAATATATRCWGGT
NTATATA-------
G T A C G C T A T C G A G C A T C G T A G A C T T C G A G A C T C T A G A G T C G C T A A C T G T A C G C G A T
T A G C C G A T C G T A A C G T C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SHEP(RRM)/Drosophila_melanogaster-RNCMPT00174-PBM/HughesRNA

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CAATATATRCWGGT
TAATATA-------
G T A C G C T A T C G A G C A T C G T A G A C T T C G A G A C T C T A G A G T C G C T A A C T G T A C G C G A T
G A C T C G T A C G T A G C A T C G T A C G A T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SUP-26(RRM)/Caenorhabditis_elegans-RNCMPT00182-PBM/HughesRNA

Match Rank:5
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CAATATATRCWGGT
--ATATTTA-----
G T A C G C T A T C G A G C A T C G T A G A C T T C G A G A C T C T A G A G T C G C T A A C T G T A C G C G A T
A C G T A C G T C G T A A C G T C G T A C G A T C G A T G C A T C T G A A C G T A C G T A C G T A C G T A C G T

SPT15/MA0386.1/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CAATATATRCWGGT----
NNNNAATATATATANCTANNN
A C G T A C G T A C G T G T A C G C T A T C G A G C A T C G T A G A C T T C G A G A C T C T A G A G T C G C T A A C T G T A C G C G A T A C G T A C G T A C G T A C G T
G T C A C G A T A G T C A T C G G C T A G C T A G C A T C G T A G C A T G C T A G C A T G T C A G C A T C G T A G A C T A G T C G C A T C T G A C T A G C G A T A G T C

Arid5a/MA0602.1/Jaspar

Match Rank:7
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----CAATATATRCWGGT
NNTNNCAATATTAG-----
A C G T A C G T A C G T A C G T A C G T G T A C G C T A T C G A G C A T C G T A G A C T T C G A G A C T C T A G A G T C G C T A A C T G T A C G C G A T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T A C G T A C G T A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:8
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----CAATATATRCWGGT
NNTNNCAATATTAG-----
A C G T A C G T A C G T A C G T A C G T G T A C G C T A T C G A G C A T C G T A G A C T T C G A G A C T C T A G A G T C G C T A A C T G T A C G C G A T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T A C G T A C G T A C G T

CBF(- other)/several species/AthaMap

Match Rank:9
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CAATATATRCWGGT
AATTCCAATTATA------
A C G T A C G T A C G T A C G T A C G T G T A C G C T A T C G A G C A T C G T A G A C T T C G A G A C T C T A G A G T C G C T A A C T G T A C G C G A T
C G T A C G T A C A G T C G A T G T A C A G T C C G T A C G T A A C G T C G A T G C T A G C A T G C T A A C G T A C G T A C G T A C G T A C G T A C G T

NHP6A/MA0345.1/Jaspar

Match Rank:10
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CAATATATRCWGGT--
ATGACCTATATATAAAAATGA
A C G T A C G T A C G T A C G T A C G T G T A C G C T A T C G A G C A T C G T A G A C T T C G A G A C T C T A G A G T C G C T A A C T G T A C G C G A T A C G T A C G T
T G C A G C A T C A T G G C T A G T A C G A T C G C A T G T C A G C A T C G T A G C A T C G T A G C A T C G T A C G T A C G T A C G T A C G T A G C A T C T A G G T C A