Information for 2-CCACYAAGAAGC (Motif 2)

A G T C A G T C C G T A G T A C A G T C C G T A C G T A A C T G C G T A C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T A C G T A G T C A C G T A C G T C T A G A C T G A C G T A C T G A C T G
p-value:1e-16
log p-value:-3.848e+01
Information Content per bp:1.937
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif5.00%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets130.0 +/- 73.5bp
Average Position of motif in Background102.1 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TRA2(RRM)/Drosophila_melanogaster-RNCMPT00078-PBM/HughesRNA

Match Rank:1
Score:0.67
Offset:4
Orientation:forward strand
Alignment:CCACYAAGAAGC
----GAAGAAG-
A G T C A G T C C G T A G T A C A G T C C G T A C G T A A C T G C G T A C G T A A C T G A G T C
A C G T A C G T A C G T A C G T T C A G C G T A C T G A A T C G C G T A C G T A A T C G A C G T

schlank/MA0193.1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CCACYAAGAAGC
CTACCAA-----
A G T C A G T C C G T A G T A C A G T C C G T A C G T A A C T G C G T A C G T A A C T G A G T C
A G T C A G C T G T C A G T A C A G T C C T G A C T G A A C G T A C G T A C G T A C G T A C G T

PEND/MA0127.1/Jaspar

Match Rank:3
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CCACYAAGAAGC
--AATAAGAAGT
A G T C A G T C C G T A G T A C A G T C C G T A C G T A A C T G C G T A C G T A A C T G A G T C
A C G T A C G T T G C A C G T A A C G T G C T A T C G A C T A G G C T A G T C A T C A G A G C T

POL008.1_DCE_S_I/Jaspar

Match Rank:4
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:CCACYAAGAAGC
------NGAAGC
A G T C A G T C C G T A G T A C A G T C C G T A C G T A A C T G C G T A C G T A A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C

OSR2/MA1646.1/Jaspar

Match Rank:5
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CCACYAAGAAGC--
--AAACAGAAGCAG
A G T C A G T C C G T A G T A C A G T C C G T A C G T A A C T G C G T A C G T A A C T G A G T C A C G T A C G T
A C G T A C G T G T C A G T C A T G C A T A G C C T G A T A C G C G T A T C G A C T A G A G T C G T C A T C A G

Foxn1/MA1684.1/Jaspar

Match Rank:6
Score:0.61
Offset:6
Orientation:forward strand
Alignment:CCACYAAGAAGC
------GGACGC
A G T C A G T C C G T A G T A C A G T C C G T A C G T A A C T G C G T A C G T A A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C T G C G T A G T A C A C T G A G T C

REF2(RRM)/Drosophila_melanogaster-RNCMPT00059-PBM/HughesRNA

Match Rank:7
Score:0.61
Offset:6
Orientation:forward strand
Alignment:CCACYAAGAAGC-
------AGAAGGC
A G T C A G T C C G T A G T A C A G T C C G T A C G T A A C T G C G T A C G T A A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A C G T A C T A G T C A G G T A C

che-1/MA0260.1/Jaspar

Match Rank:8
Score:0.60
Offset:7
Orientation:forward strand
Alignment:CCACYAAGAAGC-
-------GAAACC
A G T C A G T C C G T A G T A C A G T C C G T A C G T A A C T G C G T A C G T A A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A C T G A A G T C A T G C

MA0260.1_che-1/Jaspar

Match Rank:9
Score:0.60
Offset:7
Orientation:forward strand
Alignment:CCACYAAGAAGC-
-------GAAACC
A G T C A G T C C G T A G T A C A G T C C G T A C G T A A C T G C G T A C G T A A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A C T G A A G T C A T G C

NAC078/MA1677.1/Jaspar

Match Rank:10
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CCACYAAGAAGC--
--AACAAGAAACAT
A G T C A G T C C G T A G T A C A G T C C G T A C G T A A C T G C G T A C G T A A C T G A G T C A C G T A C G T
A C G T A C G T G C T A C T G A A G T C C G T A G T C A A C T G G C T A G C T A C G T A G A T C G T C A C G A T