Information for 13-CTGGACGAGA (Motif 12)

T A G C G A C T T A C G C A T G G C T A G T A C C T A G C G T A C T A G T G C A
Reverse Opposite:
A C G T G A T C G C A T G A T C C A T G C A G T G T A C A T G C C T G A A T C G
p-value:1e-19
log p-value:-4.432e+01
Information Content per bp:1.648
Number of Target Sequences with motif228.0
Percentage of Target Sequences with motif11.35%
Number of Background Sequences with motif2786.3
Percentage of Background Sequences with motif5.98%
Average Position of motif in Targets96.6 +/- 46.7bp
Average Position of motif in Background100.2 +/- 64.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FXR2(KH)/Homo_sapiens-RNCMPT00020-PBM/HughesRNA

Match Rank:1
Score:0.72
Offset:2
Orientation:forward strand
Alignment:CTGGACGAGA
--GGACGGG-
T A G C G A C T T A C G C A T G G C T A G T A C C T A G C G T A C T A G T G C A
A C G T A C G T C T A G A C T G C G T A A G T C C T A G C T A G C T A G A C G T

SMZ/MA0553.1/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CTGGACGAGA
--GTACGAGG
T A G C G A C T T A C G C A T G G C T A G T A C C T A G C G T A C T A G T G C A
A C G T A C G T A C T G A C G T G T C A A G T C A C T G C G T A A T C G C T A G

SRSF1(RRM)/Homo_sapiens-RNCMPT00108-PBM/HughesRNA

Match Rank:3
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CTGGACGAGA
--GGAGGAN-
T A G C G A C T T A C G C A T G G C T A G T A C C T A G C G T A C T A G T G C A
A C G T A C G T A C T G A C T G C G T A A T C G A C T G C T G A T C A G A C G T

FMR1(KH)/Homo_sapiens-RNCMPT00016-PBM/HughesRNA

Match Rank:4
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CTGGACGAGA
--GGACAAG-
T A G C G A C T T A C G C A T G G C T A G T A C C T A G C G T A C T A G T G C A
A C G T A C G T A C T G A C T G C G T A A G T C C T G A C T G A C T A G A C G T

SRSF1(RRM)/Homo_sapiens-RNCMPT00109-PBM/HughesRNA

Match Rank:5
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CTGGACGAGA
--GGAGGAN-
T A G C G A C T T A C G C A T G G C T A G T A C C T A G C G T A C T A G T G C A
A C G T A C G T A C T G A C T G C G T A A T C G A C T G C T G A T C G A A C G T

RBM45(RRM)/Homo_sapiens-RNCMPT00241-PBM/HughesRNA

Match Rank:6
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CTGGACGAGA
---GACGACA
T A G C G A C T T A C G C A T G G C T A G T A C C T A G C G T A C T A G T G C A
A C G T A C G T A C G T A C T G C G T A T A G C A C T G C T G A G T A C T G C A

PB0139.1_Irf5_2/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CTGGACGAGA-----
TTGACCGAGAATTCC
T A G C G A C T T A C G C A T G G C T A G T A C C T A G C G T A C T A G T G C A A C G T A C G T A C G T A C G T A C G T
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

SRSF1(RRM)/Homo_sapiens-RNCMPT00107-PBM/HughesRNA

Match Rank:8
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CTGGACGAGA
--GGAGGAN-
T A G C G A C T T A C G C A T G G C T A G T A C C T A G C G T A C T A G T G C A
A C G T A C G T A C T G C T A G C G T A A C T G A C T G C T G A T G C A A C G T

SRSF1(RRM)/Homo_sapiens-RNCMPT00163-PBM/HughesRNA

Match Rank:9
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CTGGACGAGA
--GGAGGAG-
T A G C G A C T T A C G C A T G G C T A G T A C C T A G C G T A C T A G T G C A
A C G T A C G T A C T G A C T G C T G A C T A G T C A G G T C A T A C G A C G T

Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer

Match Rank:10
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CTGGACGAGA-----
---GAYGNGACRGGN
T A G C G A C T T A C G C A T G G C T A G T A C C T A G C G T A C T A G T G C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T C G T G C A G A T C C T A G A C G T A T C G C G T A A G T C T C A G A C T G T C A G G C T A