Information for 2-CAGCAGCAGT (Motif 3)

T G A C T G C A A T C G T A G C T C G A C A T G G A T C G T C A A C T G A G C T
Reverse Opposite:
T C G A T G A C C A G T C T A G G T A C A G C T A T C G T A G C A C G T A C T G
p-value:1e-13
log p-value:-3.150e+01
Information Content per bp:1.648
Number of Target Sequences with motif95.0
Percentage of Target Sequences with motif32.42%
Number of Background Sequences with motif6707.6
Percentage of Background Sequences with motif14.73%
Average Position of motif in Targets104.3 +/- 53.6bp
Average Position of motif in Background100.5 +/- 65.3bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Med/dmmpmm(SeSiMCMC)/fly

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CAGCAGCAGT
CACGCGCAGC
T G A C T G C A A T C G T A G C T C G A C A T G G A T C G T C A A C T G A G C T
A T G C T C G A A T C G A T C G A T G C A T C G A G T C G T C A C T A G A G C T

Adf1/dmmpmm(Bergman)/fly

Match Rank:2
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CAGCAGCAGT
NACAGAAGCAGC
A C G T A C G T T G A C T G C A A T C G T A G C T C G A C A T G G A T C G T C A A C T G A G C T
C A G T C T A G A G T C C T A G A C T G G T A C C T A G A C T G A T C G C G T A A C T G A G T C

SeqBias: GCW-triplet

Match Rank:3
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CAGCAGCAGT-
GCAGCAGCAGCA
A C G T T G A C T G C A A T C G T A G C T C G A C A T G G A T C G T C A A C T G A G C T A C G T
A C T G A G T C C G A T A C T G A G T C C G A T A C T G A G T C C G A T A C T G A G T C C G A T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:4
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CAGCAGCAGT-
NNAGCAGCTGCT
A C G T T G A C T G C A A T C G T A G C T C G A C A T G G A T C G T C A A C T G A G C T A C G T
T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CAGCAGCAGT
CAGCAGCTGN
T G A C T G C A A T C G T A G C T C G A C A T G G A T C G T C A A C T G A G C T
T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T

odd/MA0454.1/Jaspar

Match Rank:6
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--CAGCAGCAGT
AACAGTAGCAG-
A C G T A C G T T G A C T G C A A T C G T A G C T C G A C A T G G A T C G T C A A C T G A G C T
G T C A G T C A A T G C C T G A A C T G A C G T C G T A A C T G A G T C T G C A T C A G A C G T

OSR2/MA1646.1/Jaspar

Match Rank:7
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CAGCAGCAGT
AAACAGAAGCAG-
A C G T A C G T A C G T T G A C T G C A A T C G T A G C T C G A C A T G G A T C G T C A A C T G A G C T
G T C A G T C A T G C A T A G C C T G A T A C G C G T A T C G A C T A G A G T C G T C A T C A G A C G T

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:8
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CAGCAGCAGT
CACAGCAGGGG-
A C G T A C G T T G A C T G C A A T C G T A G C T C G A C A T G G A T C G T C A A C T G A G C T
T A G C T C G A A G T C T G C A T A C G A G T C T C G A A T C G A C T G T A C G T C A G A C G T

Ascl2/MA0816.1/Jaspar

Match Rank:9
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CAGCAGCAGT-
-AGCAGCTGCT
T G A C T G C A A T C G T A G C T C G A C A T G G A T C G T C A A C T G A G C T A C G T
A C G T C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T

odd/dmmpmm(Noyes)/fly

Match Rank:10
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CAGCAGCAGT
AACAGTAGCA--
A C G T A C G T T G A C T G C A A T C G T A G C T C G A C A T G G A T C G T C A A C T G A G C T
G T C A T G C A A G T C T C G A C T A G C A G T C G T A A C T G A G T C T G C A A C G T A C G T