Information for 9-CGACGTCACTCA (Motif 9)

A T G C A T C G C G T A A G T C A C T G A C G T A G T C C G T A A G T C A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A C T G A C G T A C T G C G T A A G T C A C T G A C G T A T G C A T C G
p-value:1e-12
log p-value:-2.932e+01
Information Content per bp:1.936
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif4.17%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.0 +/- 37.2bp
Average Position of motif in Background99.5 +/- 39.3bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer

Match Rank:1
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:CGACGTCACTCA
-GACGTCAB---
A T G C A T C G C G T A A G T C A C T G A C G T A G T C C G T A A G T C A C G T A G T C C G T A
A C G T A C T G C G T A A G T C C T A G G C A T T G A C C G T A A G T C A C G T A C G T A C G T

SKO1/Literature(Harbison)/Yeast

Match Rank:2
Score:0.74
Offset:2
Orientation:forward strand
Alignment:CGACGTCACTCA
--ACGTCA----
A T G C A T C G C G T A A G T C A C T G A C G T A G T C C G T A A G T C A C G T A G T C C G T A
A C G T A C G T C G T A A G T C A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:3
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:CGACGTCACTCA
--ACGTCA----
A T G C A T C G C G T A A G T C A C T G A C G T A G T C C G T A A G T C A C G T A G T C C G T A
A C G T A C G T C T G A A G T C T C A G A C G T G T A C C G T A A C G T A C G T A C G T A C G T

atf-7/MA1438.1/Jaspar

Match Rank:4
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:CGACGTCACTCA
TGACGTCATN--
A T G C A T C G C G T A A G T C A C T G A C G T A G T C C G T A A G T C A C G T A G T C C G T A
A C G T A T C G C T G A A G T C T C A G G C A T A G T C C T G A A G C T C G A T A C G T A C G T

PKNOX1/MA0782.2/Jaspar

Match Rank:5
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-CGACGTCACTCA--
NNGCTGTCACTCANN
A C G T A T G C A T C G C G T A A G T C A C T G A C G T A G T C C G T A A G T C A C G T A G T C C G T A A C G T A C G T
G A C T T C G A A T C G T G A C G C A T C T A G G A C T T A G C G C T A T G A C G A C T A G T C G C T A C G T A G C T A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:6
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CGACGTCACTCA-
-SCTGTCAVTCAV
A T G C A T C G C G T A A G T C A C T G A C G T A G T C C G T A A G T C A C G T A G T C C G T A A C G T
A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

TGA7/MA1070.1/Jaspar

Match Rank:7
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CGACGTCACTCA
TGACGTCACN--
A T G C A T C G C G T A A G T C A C T G A C G T A G T C C G T A A G T C A C G T A G T C C G T A
G C A T A C T G C T G A G T A C T C A G C G A T G A T C C G T A A G T C T G A C A C G T A C G T

CST6/MA0286.1/Jaspar

Match Rank:8
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CGACGTCACTCA
TTACGTCAT---
A T G C A T C G C G T A A G T C A C T G A C G T A G T C C G T A A G T C A C G T A G T C C G T A
G A C T C A G T C G T A A G T C A C T G A C G T G T A C C G T A A G C T A C G T A C G T A C G T

STF1(bZIP)/Glycine max/AthaMap

Match Rank:9
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--CGACGTCACTCA
NATGACGTCATC--
A C G T A C G T A T G C A T C G C G T A A G T C A C T G A C G T A G T C C G T A A G T C A C G T A G T C C G T A
C G T A T C G A G C A T A T C G C G T A A G T C A C T G A C G T A G T C C G T A G A C T G A C T A C G T A C G T

PBX3/MA1114.1/Jaspar

Match Rank:10
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--CGACGTCACTCA---
NNNCCTGTCACTCANNN
A C G T A C G T A T G C A T C G C G T A A G T C A C T G A C G T A G T C C G T A A G T C A C G T A G T C C G T A A C G T A C G T A C G T
T A G C A G T C T A C G A T G C T G A C G A C T A T C G G A C T A T G C G T C A T G A C G C A T A G T C G C T A T G A C T G A C A T G C