Information for 1-CAGGTA (Motif 1)

G T A C C G T A A C T G A C T G A C G T G C T A
Reverse Opposite:
C G A T C G T A A G T C A G T C A C G T A C T G
p-value:1e-51
log p-value:-1.175e+02
Information Content per bp:1.875
Number of Target Sequences with motif748.0
Percentage of Target Sequences with motif49.73%
Number of Background Sequences with motif14444.1
Percentage of Background Sequences with motif30.99%
Average Position of motif in Targets113.4 +/- 55.8bp
Average Position of motif in Background99.4 +/- 66.7bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.31
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

vfl/MA1462.1/Jaspar

Match Rank:1
Score:0.95
Offset:-3
Orientation:forward strand
Alignment:---CAGGTA---
CTGCAGGTAGGC
A C G T A C G T A C G T G T A C C G T A A C T G A C T G A C G T G C T A A C G T A C G T A C G T
G T A C G C A T C A T G A G T C C T G A T A C G T C A G G A C T T G C A T C A G T C A G G T A C

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:2
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-CAGGTA---
VCAGGTRDRY
A C G T G T A C C G T A A C T G A C T G A C G T G C T A A C G T A C G T A C G T
T G C A G T A C C G T A A T C G A C T G A C G T C T A G C G A T T C G A A G T C

Tag/dmmpmm(Papatsenko)/fly

Match Rank:3
Score:0.91
Offset:0
Orientation:forward strand
Alignment:CAGGTA-
CAGGTAG
G T A C C G T A A C T G A C T G A C G T G C T A A C G T
A G T C C G T A A C T G A T C G A G C T C G T A C T A G

Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer

Match Rank:4
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-CAGGTA---
WCAGGTAGVM
A C G T G T A C C G T A A C T G A C T G A C G T G C T A A C G T A C G T A C G T
G C A T A G T C C G T A A C T G A C T G A C G T C G T A C T A G T A G C T G A C

NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer

Match Rank:5
Score:0.88
Offset:-4
Orientation:forward strand
Alignment:----CAGGTA
TKNTCAGGTG
A C G T A C G T A C G T A C G T G T A C C G T A A C T G A C T G A C G T G C T A
G A C T A C G T C G A T A G C T A G T C C G T A A C T G A C T G C G A T C T A G

MOT3/MA0340.1/Jaspar

Match Rank:6
Score:0.85
Offset:0
Orientation:forward strand
Alignment:CAGGTA
AAGGCA
G T A C C G T A A C T G A C T G A C G T G C T A
G A C T C G T A A C T G A C T G A G C T C G T A

MOT3/Literature(Harbison)/Yeast

Match Rank:7
Score:0.85
Offset:0
Orientation:forward strand
Alignment:CAGGTA
NAGGCA
G T A C C G T A A C T G A C T G A C G T G C T A
G A C T C G T A A C T G A C T G A G C T C G T A

MOT3(MacIsaac)/Yeast

Match Rank:8
Score:0.85
Offset:0
Orientation:forward strand
Alignment:CAGGTA
NAGGCA
G T A C C G T A A C T G A C T G A C G T G C T A
G A C T C G T A A C T G A C T G A G C T C G T A

grh/dmmpmm(Papatsenko)/fly

Match Rank:9
Score:0.85
Offset:-2
Orientation:reverse strand
Alignment:--CAGGTA
AGCAGGTA
A C G T A C G T G T A C C G T A A C T G A C T G A C G T G C T A
T C G A T A C G G T A C C G T A A C T G T C A G G C A T G C T A

ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer

Match Rank:10
Score:0.81
Offset:-3
Orientation:forward strand
Alignment:---CAGGTA---
GNMCAGGTGTGC
A C G T A C G T A C G T G T A C C G T A A C T G A C T G A C G T G C T A A C G T A C G T A C G T
C T A G A C T G T G C A A G T C C G T A A C T G A C T G A C G T C T A G C G A T T A C G A G T C