Information for 19-TTTTGTTTTT (Motif 17)

A C G T C G A T C A G T A C G T A C T G A G C T A C G T C A G T A C G T C A G T
Reverse Opposite:
G T C A T G C A G T C A T G C A T C G A T G A C T G C A G T C A G C T A T G C A
p-value:1e-11
log p-value:-2.660e+01
Information Content per bp:1.654
Number of Target Sequences with motif723.0
Percentage of Target Sequences with motif48.79%
Number of Background Sequences with motif18654.7
Percentage of Background Sequences with motif39.91%
Average Position of motif in Targets81.5 +/- 64.4bp
Average Position of motif in Background100.3 +/- 61.6bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.46
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SeqBias: polyA-repeat

Match Rank:1
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:TTTTGTTTTT
TTTTTTTTTT
A C G T C G A T C A G T A C G T A C T G A G C T A C G T C A G T A C G T C A G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer

Match Rank:2
Score:0.89
Offset:0
Orientation:forward strand
Alignment:TTTTGTTTTT
TTTTTTTTTT
A C G T C G A T C A G T A C G T A C T G A G C T A C G T C A G T A C G T C A G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

fkh-9/MA1440.1/Jaspar

Match Rank:3
Score:0.84
Offset:2
Orientation:reverse strand
Alignment:TTTTGTTTTT
--TTGTTTTT
A C G T C G A T C A G T A C G T A C T G A G C T A C G T C A G T A C G T C A G T
A C G T A C G T C G A T C G A T C T A G A C G T A C G T C G A T C G A T A C G T

br-Z3/dmmpmm(Down)/fly

Match Rank:4
Score:0.81
Offset:0
Orientation:forward strand
Alignment:TTTTGTTTTT
TTTTGTTTAT
A C G T C G A T C A G T A C G T A C T G A G C T A C G T C A G T A C G T C A G T
C G A T G C A T C G A T C G A T C T A G G C A T G C A T C A G T C G T A G A C T

HuR(RRM)/Homo_sapiens-RNCMPT00112-PBM/HughesRNA

Match Rank:5
Score:0.81
Offset:1
Orientation:forward strand
Alignment:TTTTGTTTTT
-TTTGTTT--
A C G T C G A T C A G T A C G T A C T G A G C T A C G T C A G T A C G T C A G T
A C G T A C G T A C G T C G A T C T A G A C G T A C G T A C G T A C G T A C G T

Pp_0229(RRM)/Physcomitrella_patens-RNCMPT00229-PBM/HughesRNA

Match Rank:6
Score:0.80
Offset:3
Orientation:forward strand
Alignment:TTTTGTTTTT
---TGTTTTT
A C G T C G A T C A G T A C G T A C T G A G C T A C G T C A G T A C G T C A G T
A C G T A C G T A C G T C G A T A C T G C G A T A C G T A C G T A C G T C A G T

ZC3H14(Znf)/Homo_sapiens-RNCMPT00086-PBM/HughesRNA

Match Rank:7
Score:0.80
Offset:1
Orientation:forward strand
Alignment:TTTTGTTTTT
-TTTGTTT--
A C G T C G A T C A G T A C G T A C T G A G C T A C G T C A G T A C G T C A G T
A C G T A C G T A C G T C A G T C A T G A C G T A C G T A C G T A C G T A C G T

Lm_0255(RRM)/Leishmania_major-RNCMPT00255-PBM/HughesRNA

Match Rank:8
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:TTTTGTTTTT
-TTTTTTT--
A C G T C G A T C A G T A C G T A C T G A G C T A C G T C A G T A C G T C A G T
A C G T A G C T A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

HuR(RRM)/Homo_sapiens-RNCMPT00117-PBM/HughesRNA

Match Rank:9
Score:0.80
Offset:1
Orientation:forward strand
Alignment:TTTTGTTTTT
-TTTGTTT--
A C G T C G A T C A G T A C G T A C T G A G C T A C G T C A G T A C G T C A G T
A C G T A C G T A C G T C G A T T C A G A C G T A G C T A C G T A C G T A C G T

IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer

Match Rank:10
Score:0.80
Offset:0
Orientation:forward strand
Alignment:TTTTGTTTTT-----
TTTTGTCTTTTTBTK
A C G T C G A T C A G T A C G T A C T G A G C T A C G T C A G T A C G T C A G T A C G T A C G T A C G T A C G T A C G T
G C A T A G C T A C G T A C G T A C T G A C G T G A T C A C G T A C G T A G C T C G A T G C A T A G T C G A C T C A G T