Information for 2-CAWCATGG (Motif 2)

T G A C C G T A C G A T A T G C G C T A G C A T A C T G C A T G
Reverse Opposite:
G T A C T G A C C G T A C G A T T A C G G C T A G C A T A C T G
p-value:1e-25
log p-value:-5.913e+01
Information Content per bp:1.532
Number of Target Sequences with motif141.0
Percentage of Target Sequences with motif31.47%
Number of Background Sequences with motif5585.7
Percentage of Background Sequences with motif12.36%
Average Position of motif in Targets112.8 +/- 48.9bp
Average Position of motif in Background99.5 +/- 64.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tv_0259(RRM)/Trichomonas_vaginalis-RNCMPT00259-PBM/HughesRNA

Match Rank:1
Score:0.80
Offset:1
Orientation:forward strand
Alignment:CAWCATGG
-ACCATGN
T G A C C G T A C G A T A T G C G C T A G C A T A C T G C A T G
A C G T C G T A A G T C A G T C C G T A A C G T A C T G C T G A

AGL42/MA1201.1/Jaspar

Match Rank:2
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:CAWCATGG
GATGATG-
T G A C C G T A C G A T A T G C G C T A G C A T A C T G C A T G
C T A G C G T A A C G T A C T G C T G A A C G T A C T G A C G T

YY1/MA0095.2/Jaspar

Match Rank:3
Score:0.73
Offset:0
Orientation:forward strand
Alignment:CAWCATGG----
CAAGATGGCGGC
T G A C C G T A C G A T A T G C G C T A G C A T A C T G C A T G A C G T A C G T A C G T A C G T
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer

Match Rank:4
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-CAWCATGG-
TAATSATTRC
A C G T T G A C C G T A C G A T A T G C G C T A G C A T A C T G C A T G A C G T
G A C T T G C A C G T A A C G T T A G C C G T A A C G T C A G T C T G A A G T C

SNRNP70K(RRM)/Drosophila_melanogaster-RNCMPT00143-PBM/HughesRNA

Match Rank:5
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CAWCATGG
GATCAAGA
T G A C C G T A C G A T A T G C G C T A G C A T A C T G C A T G
C T A G C G T A A C G T A G T C C G T A G C T A A C T G G T C A

HAT1/MA1024.1/Jaspar

Match Rank:6
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CAWCATGG
CCAATCATTA
A C G T A C G T T G A C C G T A C G A T A T G C G C T A G C A T A C T G C A T G
A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G A T A C G T C T G A

PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer

Match Rank:7
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CAWCATGG
RTAATSATTA
A C G T A C G T T G A C C G T A C G A T A T G C G C T A G C A T A C T G C A T G
T C A G A G C T G T C A C G T A A C G T A T G C C G T A A C G T A C G T C T G A

MATR3(RRM)/Homo_sapiens-RNCMPT00037-PBM/HughesRNA

Match Rank:8
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CAWCATGG
CAAGATT-
T G A C C G T A C G A T A T G C G C T A G C A T A C T G C A T G
A G T C C G T A C G T A A C T G C G T A C G A T A C G T A C G T

ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer

Match Rank:9
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CAWCATGG-
CAATNATTBN
A C G T T G A C C G T A C G A T A T G C G C T A G C A T A C T G C A T G A C G T
A G T C G T C A G C T A C G A T T G C A C G T A C G A T C A G T A T C G C T A G

HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer

Match Rank:10
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CAWCATGG
CYAATSATTR
A C G T A C G T T G A C C G T A C G A T A T G C G C T A G C A T A C T G C A T G
G A T C G A T C G C T A G T C A G A C T A T G C T C G A C G A T C G A T C T A G