Information for 3-TCGHCTGTCGTATT (Motif 4)

A C G T A G T C A C T G G A C T A G T C A C G T A C T G A C G T A T G C C T A G A C G T C T G A A C G T A C G T
Reverse Opposite:
C G T A C G T A A G C T C G T A A G T C A T C G C G T A A G T C C G T A C T A G C G T A G T A C C T A G G T C A
p-value:1e-7
log p-value:-1.714e+01
Information Content per bp:1.788
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif6.58%
Number of Background Sequences with motif54.2
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets122.7 +/- 53.3bp
Average Position of motif in Background84.1 +/- 59.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer

Match Rank:1
Score:0.72
Offset:3
Orientation:forward strand
Alignment:TCGHCTGTCGTATT-
---TTTGTCKTTTTN
A C G T A G T C A C T G G A C T A G T C A C G T A C T G A C G T A T G C C T A G A C G T C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A G C T A G C T A G C T A C T G A C G T A G T C A C T G A C G T G A C T C G A T G C A T A T C G

JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer

Match Rank:2
Score:0.71
Offset:2
Orientation:forward strand
Alignment:TCGHCTGTCGTATT
--TTTTGTCGTTTT
A C G T A G T C A C T G G A C T A G T C A C G T A C T G A C G T A T G C C T A G A C G T C T G A A C G T A C G T
A C G T A C G T G C A T A G C T A G C T A G C T A C T G A C G T A G T C A C T G A C G T G A C T C G A T G C A T

NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer

Match Rank:3
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:TCGHCTGTCGTATT---
--TTTTGTCGTTTTBTD
A C G T A G T C A C T G G A C T A G T C A C G T A C T G A C G T A T G C C T A G A C G T C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T A G C T A G C T A G C T A C T G A C G T A G T C A C T G A C G T G A C T C G A T G C A T A T C G A G C T C A T G

IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer

Match Rank:4
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:TCGHCTGTCGTATT---
--TTTTGTCKTTTTBTD
A C G T A G T C A C T G G A C T A G T C A C G T A C T G A C G T A T G C C T A G A C G T C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T A G C T A C G T A C G T A C T G A C G T A G T C A C T G A G C T G C A T C G A T G C A T A G C T A G C T C A G T

NUC/MA1157.1/Jaspar

Match Rank:5
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---TCGHCTGTCGTATT---
TTTTTTTTTGTCGTTTTGTG
A C G T A C G T A C G T A C G T A G T C A C T G G A C T A G T C A C G T A C T G A C G T A T G C C T A G A C G T C T G A A C G T A C G T A C G T A C G T A C G T
G C A T G C A T G C A T C G A T C G A T G C A T A G C T A C G T A G C T A C T G A C G T A G T C A C T G A C G T G A C T C G A T G C A T A T C G A G C T C A T G

MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer

Match Rank:6
Score:0.69
Offset:2
Orientation:forward strand
Alignment:TCGHCTGTCGTATT
--TTTTGTCGTTTW
A C G T A G T C A C T G G A C T A G T C A C G T A C T G A C G T A T G C C T A G A C G T C T G A A C G T A C G T
A C G T A C G T G A C T A C G T A G C T G A C T A C T G C A G T A G T C A T C G A C G T G C A T G C A T G C A T

MGP/MA1158.1/Jaspar

Match Rank:7
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TCGHCTGTCGTATT---
TTTTTTTTTGTCGTTTTNTN
A C G T A C G T A C G T A C G T A G T C A C T G G A C T A G T C A C G T A C T G A C G T A T G C C T A G A C G T C T G A A C G T A C G T A C G T A C G T A C G T
G C A T G C A T G C A T C G A T C G A T C G A T A G C T A G C T A G C T A C T G A G C T A G T C A C T G A C G T G C A T G C A T G C A T A T G C A G C T C A T G

JKD/MA1156.1/Jaspar

Match Rank:8
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---TCGHCTGTCGTATT---
TTTTTTTTTGTCGTTTTCTG
A C G T A C G T A C G T A C G T A G T C A C T G G A C T A G T C A C G T A C T G A C G T A T G C C T A G A C G T C T G A A C G T A C G T A C G T A C G T A C G T
G C A T G C A T G C A T C G A T C G A T C G A T A G C T A G C T A G C T A C T G A C G T G A T C A C T G A C G T G A C T C G A T G C A T A T G C G A C T C A T G

ID1(C2H2(Zn))/Zea mays/AthaMap

Match Rank:9
Score:0.68
Offset:3
Orientation:forward strand
Alignment:TCGHCTGTCGTATT
---TTTGTCGTTTT
A C G T A G T C A C T G G A C T A G T C A C G T A C T G A C G T A T G C C T A G A C G T C T G A A C G T A C G T
A C G T A C G T A C G T A G C T A C G T A G C T A C T G A C G T A G T C A T C G A G C T G C A T G C A T G C A T

IDD7/MA1374.1/Jaspar

Match Rank:10
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TCGHCTGTCGTATT---
TTTTTTTGTCGTTTTNTN
A C G T A C G T A G T C A C T G G A C T A G T C A C G T A C T G A C G T A T G C C T A G A C G T C T G A A C G T A C G T A C G T A C G T A C G T
G C A T C G A T C G A T G C A T A G C T A G C T A G C T A C T G C A G T A G T C A C T G A C G T A G C T C G A T G C A T A T C G A G C T C A T G