Information for 1-GAGTCTGCGCAGCG (Motif 1)

A C T G C G T A A C T G A C G T A G T C A C G T A C T G G T A C A C T G G A T C T C G A A C T G G T A C A C T G
Reverse Opposite:
A G T C A C T G A G T C A C G T C A T G A G T C A C T G A G T C C G T A A C T G C G T A A G T C A C G T A G T C
p-value:1e-11
log p-value:-2.713e+01
Information Content per bp:1.876
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif3.31%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets103.0 +/- 35.9bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ARG80(MacIsaac)/Yeast

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GAGTCTGCGCAGCG
GCGTCT--------
A C T G C G T A A C T G A C G T A G T C A C G T A C T G G T A C A C T G G A T C T C G A A C T G G T A C A C T G
C T A G G T A C A C T G A C G T A G T C C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ARG80/MA0271.1/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GAGTCTGCGCAGCG
GCGTCT--------
A C T G C G T A A C T G A C G T A G T C A C G T A C T G G T A C A C T G G A T C T C G A A C T G G T A C A C T G
C T A G G T A C A C T G A C G T A G T C C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GAGTCTGCGCAGCG
TWGTCTGV------
A C T G C G T A A C T G A C G T A G T C A C G T A C T G G T A C A C T G G A T C T C G A A C T G G T A C A C T G
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GAGTCTGCGCAGCG
VBSYGTCTGG------
A C G T A C G T A C T G C G T A A C T G A C G T A G T C A C G T A C T G G T A C A C T G G A T C T C G A A C T G G T A C A C T G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GAGTCTGCGCAGCG
GAGSCCGAGC----
A C T G C G T A A C T G A C G T A G T C A C G T A C T G G T A C A C T G G A T C T C G A A C T G G T A C A C T G
A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C A C G T A C G T A C G T A C G T

CRZ1(MacIsaac)/Yeast

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GAGTCTGCGCAGCG
GAGGCTG-------
A C T G C G T A A C T G A C G T A G T C A C G T A C T G G T A C A C T G G A T C T C G A A C T G G T A C A C T G
A C T G C G A T A C T G A C T G A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0203.1_Zfp691_2/Jaspar

Match Rank:7
Score:0.58
Offset:-7
Orientation:reverse strand
Alignment:-------GAGTCTGCGCAGCG
NTNNNAGGAGTCTCNTN----
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A G T C A C G T A C T G G T A C A C T G G A T C T C G A A C T G G T A C A C T G
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GAGTCTGCGCAGCG
CTGTCTGG------
A C T G C G T A A C T G A C G T A G T C A C G T A C T G G T A C A C T G G A T C T C G A A C T G G T A C A C T G
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GAGTCTGCGCAGCG
RGAATCTN-------
A C G T A C T G C G T A A C T G A C G T A G T C A C G T A C T G G T A C A C T G G A T C T C G A A C T G G T A C A C T G
T C G A A C T G C G T A C G T A A C G T G T A C A C G T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

BAS1/BAS1_SM/2-BAS1(Harbison)/Yeast

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GAGTCTGCGCAGCG
GAGTCA--------
A C T G C G T A A C T G A C G T A G T C A C G T A C T G G T A C A C T G G A T C T C G A A C T G G T A C A C T G
A C T G C G T A A C T G A C G T A T G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T