Information for 20-GCAAWRCSTACAAA (Motif 24)

A C T G A G T C C G T A C G T A C G A T C T G A G T A C A T G C C G A T C G T A A G T C C G T A C T G A C G T A
Reverse Opposite:
A C G T A G C T A C G T A C T G A C G T C G T A A T C G A C T G A G C T C G T A A C G T A C G T A C T G A G T C
p-value:1e-9
log p-value:-2.199e+01
Information Content per bp:1.887
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.33%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets163.8 +/- 26.9bp
Average Position of motif in Background60.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer

Match Rank:1
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GCAAWRCSTACAAA
--MAAAAMGACAAA
A C T G A G T C C G T A C G T A C G A T C T G A G T A C A T G C C G A T C G T A A G T C C G T A C T G A C G T A
A C G T A C G T T G C A C G T A C G T A C G T A T G C A T G A C A C T G G T C A A G T C C T G A T C G A T C G A

IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer

Match Rank:2
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GCAAWRCSTACAAA
--VAWAAAGACAAA
A C T G A G T C C G T A C G T A C G A T C T G A G T A C A T G C C G A T C G T A A G T C C G T A C T G A C G T A
A C G T A C G T T C A G C G T A G C T A C T G A T G C A T G C A C T A G T G C A A G T C T C G A T C G A C T G A

ARF18/MA1689.1/Jaspar

Match Rank:3
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GCAAWRCSTACAAA---
----ACCCGACAAAAAT
A C T G A G T C C G T A C G T A C G A T C T G A G T A C A T G C C G A T C G T A A G T C C G T A C T G A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A T A G C G A T C T G A C C T A G T C G A A T G C T G C A T C G A T C G A T C G A C G T A C G A T

SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer

Match Rank:4
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GCAAWRCSTACAAA
--WDWMMGTACADW
A C T G A G T C C G T A C G T A C G A T C T G A G T A C A T G C C G A T C G T A A G T C C G T A C T G A C G T A
A C G T A C G T C G A T C G T A G C A T G T A C G T A C A C T G A C G T C G T A A G T C C T G A C G T A C G T A

ID1(C2H2(Zn))/Zea mays/AthaMap

Match Rank:5
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GCAAWRCSTACAAA
---AAAACGACAAA
A C T G A G T C C G T A C G T A C G A T C T G A G T A C A T G C C G A T C G T A A G T C C G T A C T G A C G T A
A C G T A C G T A C G T C G T A C G T A C G T A C T G A T A G C C T A G G T C A G T A C C T G A C G T A C T G A

SPL9/MA1322.1/Jaspar

Match Rank:6
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GCAAWRCSTACAAA
---NTCCGTACAAN
A C T G A G T C C G T A C G T A C G A T C T G A G T A C A T G C C G A T C G T A A G T C C G T A C T G A C G T A
A C G T A C G T A C G T C T G A C G A T G T A C T G A C A C T G A C G T C G T A A G T C T C G A C G T A C A G T

JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer

Match Rank:7
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GCAAWRCSTACAAA-
---AAAACGACAAAA
A C T G A G T C C G T A C G T A C G A T C T G A G T A C A T G C C G A T C G T A A G T C C G T A C T G A C G T A A C G T
A C G T A C G T A C G T C G T A C G T A C G T A T G C A T G A C A C T G G T C A A G T C C T G A C T G A T C G A C G T A

SPL13/MA1321.1/Jaspar

Match Rank:8
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GCAAWRCSTACAAA
---NTCCGTACAAT
A C T G A G T C C G T A C G T A C G A T C T G A G T A C A T G C C G A T C G T A A G T C C G T A C T G A C G T A
A C G T A C G T A C G T C G T A C G A T G A T C T G A C A C T G A C G T C G T A A G T C T C G A C G T A G C A T

Tv_0258(RRM)/Trichomonas_vaginalis-RNCMPT00258-PBM/HughesRNA

Match Rank:9
Score:0.57
Offset:9
Orientation:reverse strand
Alignment:GCAAWRCSTACAAA--
---------ACAAACA
A C T G A G T C C G T A C G T A C G A T C T G A G T A C A T G C C G A T C G T A A G T C C G T A C T G A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G T C G T C A T C G A C G T A G T A C C G T A

BCL6B/MA0731.1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCAAWRCSTACAAA---
TGAATTCCTAGAAAGCA
A C T G A G T C C G T A C G T A C G A T C T G A G T A C A T G C C G A T C G T A A G T C C G T A C T G A C G T A A C G T A C G T A C G T
A C G T A C T G C T G A C T G A A C G T A G C T A G T C A G T C A C G T T G C A A C T G G T C A C G T A C G T A C T A G G A T C C T G A