Information for 1-GAGGASATCAAWGN (Motif 2)

T C A G C G T A C A T G A T C G C G T A A T G C G T C A C G A T T A G C T G C A C T G A G C A T C T A G T C A G
Reverse Opposite:
A G T C G A T C C G T A G A C T A C G T A T C G G C T A C A G T A T C G G C A T A T G C G T A C C G A T A G T C
p-value:1e-22
log p-value:-5.114e+01
Information Content per bp:1.565
Number of Target Sequences with motif131.0
Percentage of Target Sequences with motif15.50%
Number of Background Sequences with motif2856.8
Percentage of Background Sequences with motif6.00%
Average Position of motif in Targets105.9 +/- 49.4bp
Average Position of motif in Background100.7 +/- 65.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GAGGASATCAAWGN
-VSCACATCAAAG-
T C A G C G T A C A T G A T C G C G T A A T G C G T C A C G A T T A G C T G C A C T G A G C A T C T A G T C A G
A C G T T G C A A T G C T G A C C G T A A T G C C G T A C G A T T A G C C G T A C T G A C T G A T C A G A C G T

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:2
Score:0.69
Offset:4
Orientation:forward strand
Alignment:GAGGASATCAAWGN--
----ACATCAAAGGNA
T C A G C G T A C A T G A T C G C G T A A T G C G T C A C G A T T A G C T G C A C T G A G C A T C T A G T C A G A C G T A C G T
A C G T A C G T A C G T A C G T C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A

CREB1/MA0018.4/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GAGGASATCAAWGN
NATGACATCANNN-
T C A G C G T A C A T G A T C G C G T A A T G C G T C A C G A T T A G C T G C A C T G A G C A T C T A G T C A G
C A G T T C G A G C A T A C T G C G T A T A G C T C G A G C A T T G A C G C T A A G C T G T C A C G T A A C G T

TCF7L2/MA0523.1/Jaspar

Match Rank:4
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GAGGASATCAAWGN--
--AAAGATCAAAGGAA
T C A G C G T A C A T G A T C G C G T A A T G C G T C A C G A T T A G C T G C A C T G A G C A T C T A G T C A G A C G T A C G T
A C G T A C G T C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:5
Score:0.67
Offset:4
Orientation:forward strand
Alignment:GAGGASATCAAWGN
----ACWTCAAAGG
T C A G C G T A C A T G A T C G C G T A A T G C G T C A C G A T T A G C T G C A C T G A G C A T C T A G T C A G
A C G T A C G T A C G T A C G T C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G

TCF7/MA0769.2/Jaspar

Match Rank:6
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:GAGGASATCAAWGN-
----ANATCAAAGNN
T C A G C G T A C A T G A T C G C G T A A T G C G T C A C G A T T A G C T G C A C T G A G C A T C T A G T C A G A C G T
A C G T A C G T A C G T A C G T C G T A A T G C G C T A G C A T T G A C G C T A G C T A C G T A A C T G T C A G T G C A

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.66
Offset:4
Orientation:forward strand
Alignment:GAGGASATCAAWGN
----ACATCAAAGG
T C A G C G T A C A T G A T C G C G T A A T G C G T C A C G A T T A G C T G C A C T G A G C A T C T A G T C A G
A C G T A C G T A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:8
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GAGGASATCAAWGN----
-NNNAGATCAAAGGANNN
T C A G C G T A C A T G A T C G C G T A A T G C G T C A C G A T T A G C T G C A C T G A G C A T C T A G T C A G A C G T A C G T A C G T A C G T
A C G T A C G T G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C T A G C A T

LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer

Match Rank:9
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:GAGGASATCAAWGN
----ASATCAAAGG
T C A G C G T A C A T G A T C G C G T A A T G C G T C A C G A T T A G C T G C A C T G A G C A T C T A G T C A G
A C G T A C G T A C G T A C G T C T G A A T C G G C T A G C A T T A G C C G T A T C G A C T G A T C A G T A C G

PB0040.1_Lef1_1/Jaspar

Match Rank:10
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GAGGASATCAAWGN----
-NANAGATCAAAGGGNNN
T C A G C G T A C A T G A T C G C G T A A T G C G T C A C G A T T A G C T G C A C T G A G C A T C T A G T C A G A C G T A C G T A C G T A C G T
A C G T A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T