Information for 4-GAAGGAATATCA (Motif 4)

A C T G C G T A C G T A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A C G T C G T A A C G T A C G T A G T C A G T C A C G T A C G T A G T C
p-value:1e-24
log p-value:-5.752e+01
Information Content per bp:1.530
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif2.62%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets112.0 +/- 20.6bp
Average Position of motif in Background111.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RBM5(Znf)/Homo_sapiens-RNCMPT00055-PBM/HughesRNA

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GAAGGAATATCA
GAAGGAA-----
A C T G C G T A C G T A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A
C T A G C G T A C T G A A C T G A C T G C G T A C T G A A C G T A C G T A C G T A C G T A C G T

KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer

Match Rank:2
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:GAAGGAATATCA
--RAGAATAT--
A C T G C G T A C G T A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A
A C G T A C G T C T G A T C G A A C T G G T C A C G T A A C G T C T G A G C A T A C G T A C G T

KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GAAGGAATATCA
--ARGAATAWWN
A C T G C G T A C G T A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A
A C G T A C G T G C T A T C G A A C T G G T C A C G T A A C G T C G T A C G A T G C A T G A T C

Tb_0230(RRM)/Trypanosoma_brucei-RNCMPT00230-PBM/HughesRNA

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GAAGGAATATCA
AGAAGGAC-----
A C G T A C T G C G T A C G T A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A
C T G A A C T G C G T A C G T A A C T G A C T G C T G A T G A C A C G T A C G T A C G T A C G T A C G T

KAN2/MA1383.1/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GAAGGAATATCA----
-AAAGAATATTCTAAN
A C T G C G T A C G T A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T
A C G T C G T A C T G A C T G A C A T G C G T A C G T A A C G T C G T A C G A T C G A T G T A C A G C T C G T A C G T A C G A T

KAN1/MA1027.1/Jaspar

Match Rank:6
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:GAAGGAATATCA
----GAATATNT
A C T G C G T A C G T A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A
A C G T A C G T A C G T A C G T C A T G T G C A C T G A G A C T C T G A G C A T G A T C G A C T

TaMYB80(MYB)/Triticum aestivum/AthaMap

Match Rank:7
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GAAGGAATATCA-
--GGGAATATCCC
A C T G C G T A C G T A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A A C G T
A C G T A C G T A T C G T A C G A C T G C G T A C G T A A C G T C G T A A C G T T A G C G T A C A T C G

At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer

Match Rank:8
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GAAGGAATATCA
--DRGAATCT--
A C T G C G T A C G T A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A
A C G T A C G T C G A T T C G A A C T G G T C A C G T A C G A T G T A C G A C T A C G T A C G T

AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer

Match Rank:9
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GAAGGAATATCA
-ADRGAATGTT-
A C T G C G T A C G T A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A
A C G T C G T A C G T A C T G A A C T G C G T A C G T A A C G T C T A G C G A T C G A T A C G T

SFL1/MA0377.1/Jaspar

Match Rank:10
Score:0.64
Offset:-9
Orientation:forward strand
Alignment:---------GAAGGAATATCA
TAGAGAATAGAAGAAATAAAA
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A
G C A T G T C A T C A G G T C A C T A G G T C A C T G A G A C T T G C A C T A G G C T A C T G A A C T G T C G A G C T A G T C A G C A T C T G A C G T A C G T A G C T A