Information for 1-VMAGGTAAGW (Motif 1)

T G A C T G C A G C T A C T A G A C T G A G C T T C G A C G T A T C A G G C A T
Reverse Opposite:
C G T A A G T C C G A T A G C T C T G A A G T C G A T C C G A T A C G T A C T G
p-value:1e-65
log p-value:-1.497e+02
Information Content per bp:1.631
Number of Target Sequences with motif375.0
Percentage of Target Sequences with motif25.30%
Number of Background Sequences with motif4592.8
Percentage of Background Sequences with motif9.82%
Average Position of motif in Targets134.7 +/- 48.9bp
Average Position of motif in Background99.0 +/- 65.5bp
Strand Bias (log2 ratio + to - strand density)2.2
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.97
Offset:1
Orientation:forward strand
Alignment:VMAGGTAAGW--
-CAGGTAAGTAT
T G A C T G C A G C T A C T A G A C T G A G C T T C G A C G T A T C A G G C A T A C G T A C G T
A C G T T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:2
Score:0.76
Offset:0
Orientation:forward strand
Alignment:VMAGGTAAGW
VCAGGTRDRY
T G A C T G C A G C T A C T A G A C T G A G C T T C G A C G T A T C A G G C A T
T G C A G T A C C G T A A T C G A C T G A C G T C T A G C G A T T C G A A G T C

EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer

Match Rank:3
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-VMAGGTAAGW-
HNRCGGTAAAWA
A C G T T G A C T G C A G C T A C T A G A C T G A G C T T C G A C G T A T C A G G C A T A C G T
G T C A G T C A C T G A T G A C T C A G A C T G A C G T C G T A C G T A G C T A C G A T C T G A

NR2F2/MA1111.1/Jaspar

Match Rank:4
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-VMAGGTAAGW
CAAAGGTCAAA
A C G T T G A C T G C A G C T A C T A G A C T G A G C T T C G A C G T A T C A G G C A T
G A T C G T C A C G T A C T G A C A T G C T A G A C G T G A T C C T G A C T G A C T G A

GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer

Match Rank:5
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:VMAGGTAAGW-
-RMGGTAAAWW
T G A C T G C A G C T A C T A G A C T G A G C T T C G A C G T A T C A G G C A T A C G T
A C G T T C G A T G A C C T A G C T A G A C G T C G T A C G T A G C T A C G T A C G A T

GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer

Match Rank:6
Score:0.73
Offset:1
Orientation:forward strand
Alignment:VMAGGTAAGW---
-AMGGTAAAWWWN
T G A C T G C A G C T A C T A G A C T G A G C T T C G A C G T A T C A G G C A T A C G T A C G T A C G T
A C G T C T G A G T A C C T A G C T A G A C G T C G T A C G T A C G T A C G T A G C T A G C A T C G T A

vfl/MA1462.1/Jaspar

Match Rank:7
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--VMAGGTAAGW
CTGCAGGTAGGC
A C G T A C G T T G A C T G C A G C T A C T A G A C T G A G C T T C G A C G T A T C A G G C A T
G T A C G C A T C A T G A G T C C T G A T A C G T C A G G A C T T G C A T C A G T C A G G T A C

AT5G47660/MA1365.2/Jaspar

Match Rank:8
Score:0.73
Offset:1
Orientation:forward strand
Alignment:VMAGGTAAGW--
-ATGGTAAAAAA
T G A C T G C A G C T A C T A G A C T G A G C T T C G A C G T A T C A G G C A T A C G T A C G T
A C G T C G T A G C A T C T A G A C T G A G C T C G T A C G T A C G T A C G T A C G T A G C T A

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-VMAGGTAAGW
TCAAGGTCAN-
A C G T T G A C T G C A G C T A C T A G A C T G A G C T T C G A C G T A T C A G G C A T
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T

MOT3/Literature(Harbison)/Yeast

Match Rank:10
Score:0.72
Offset:1
Orientation:forward strand
Alignment:VMAGGTAAGW
-NAGGCA---
T G A C T G C A G C T A C T A G A C T G A G C T T C G A C G T A T C A G G C A T
A C G T G A C T C G T A A C T G A C T G A G C T C G T A A C G T A C G T A C G T