Information for 13-AGATCTTCTCCACA (Motif 17)

T C G A A C T G C G T A A C G T G T A C C G A T A G C T A G T C A C G T A G T C A G T C C T G A A T G C G T C A
Reverse Opposite:
C A G T A T C G A G C T A C T G A C T G C G T A C T A G C T G A C G T A A C T G G T C A A C G T G T A C A C G T
p-value:1e-12
log p-value:-2.832e+01
Information Content per bp:1.828
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif12.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets100.4 +/- 48.5bp
Average Position of motif in Background100.3 +/- 52.3bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN28A(CSD,Znf)/Homo_sapiens-RNCMPT00036-PBM/HughesRNA

Match Rank:1
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:AGATCTTCTCCACA
-----TTCTCCN--
T C G A A C T G C G T A A C G T G T A C C G A T A G C T A G T C A C G T A G T C A G T C C T G A A T G C G T C A
A C G T A C G T A C G T A C G T A C G T A G C T C G A T A G T C A C G T A G T C A G T C C A T G A C G T A C G T

KUA1/MA1398.2/Jaspar

Match Rank:2
Score:0.64
Offset:2
Orientation:forward strand
Alignment:AGATCTTCTCCACA
--ATCTTATCCAA-
T C G A A C T G C G T A A C G T G T A C C G A T A G C T A G T C A C G T A G T C A G T C C T G A A T G C G T C A
A C G T A C G T C G T A G A C T A T G C G C A T C G A T G T C A G A C T T A G C G A T C C G T A G C A T A C G T

AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer

Match Rank:3
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:AGATCTTCTCCACA
--ACCTTATCCA--
T C G A A C T G C G T A A C G T G T A C C G A T A G C T A G T C A C G T A G T C A G T C C T G A A T G C G T C A
A C G T A C G T C G T A G A T C G T A C G A C T C G A T C T G A A C G T A G T C G A T C C G T A A C G T A C G T

NFATC2/MA0152.1/Jaspar

Match Rank:4
Score:0.64
Offset:5
Orientation:forward strand
Alignment:AGATCTTCTCCACA
-----TTTTCCA--
T C G A A C T G C G T A A C G T G T A C C G A T A G C T A G T C A C G T A G T C A G T C C T G A A T G C G T C A
A C G T A C G T A C G T A C G T A C G T C G A T A C G T G A C T A C G T G T A C A G T C G C T A A C G T A C G T

At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer

Match Rank:5
Score:0.63
Offset:4
Orientation:forward strand
Alignment:AGATCTTCTCCACA
----CTTATCCA--
T C G A A C T G C G T A A C G T G T A C C G A T A G C T A G T C A C G T A G T C A G T C C T G A A T G C G T C A
A C G T A C G T A C G T A C G T G T A C G C A T A C G T C G T A A C G T A G T C A G T C C T G A A C G T A C G T

AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer

Match Rank:6
Score:0.62
Offset:4
Orientation:forward strand
Alignment:AGATCTTCTCCACA
----CTTATCCA--
T C G A A C T G C G T A A C G T G T A C C G A T A G C T A G T C A C G T A G T C A G T C C T G A A T G C G T C A
A C G T A C G T A C G T A C G T G A T C G C A T A C G T C G T A A C G T A G T C A G T C C G T A A C G T A C G T

AT5G61620/MA1189.1/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AGATCTTCTCCACA--
-AATCTTATCCAAATN
T C G A A C T G C G T A A C G T G T A C C G A T A G C T A G T C A C G T A G T C A G T C C T G A A T G C G T C A A C G T A C G T
A C G T G C T A C G T A G A C T G A T C G A C T C A G T C G T A A C G T A G T C A G T C C G T A G C T A C G T A G C A T G C A T

At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AGATCTTCTCCACA
AAGATATTTT-----
A C G T T C G A A C T G C G T A A C G T G T A C C G A T A G C T A G T C A C G T A G T C A G T C C T G A A T G C G T C A
C G T A C G T A A C T G C G T A A C G T G C T A A C G T A C G T G C A T G C A T A C G T A C G T A C G T A C G T A C G T

At1g19000/MA1400.1/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGATCTTCTCCACA-
-AACCTTATCCATTT
T C G A A C T G C G T A A C G T G T A C C G A T A G C T A G T C A C G T A G T C A G T C C T G A A T G C G T C A A C G T
A C G T G C T A C G T A A G T C G T A C G A C T C A G T C G T A A C G T A G T C A G T C C T G A G C A T G C A T G C A T

AT5G56840/MA1195.1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AGATCTTCTCCACA--
-AACCTTATCCATAAA
T C G A A C T G C G T A A C G T G T A C C G A T A G C T A G T C A C G T A G T C A G T C C T G A A T G C G T C A A C G T A C G T
A C G T C G T A C G T A G A T C G T A C G A C T G A C T G C T A A G C T A G T C G A T C C G T A G C A T C G T A G C T A G C T A