Information for 3-TGCACT (Motif 8)

C G A T A C T G A G T C C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G A C G T A C T G A G T C G C T A
p-value:1e-2
log p-value:-5.882e+00
Information Content per bp:1.909
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif37.29%
Number of Background Sequences with motif10383.2
Percentage of Background Sequences with motif20.86%
Average Position of motif in Targets101.5 +/- 45.8bp
Average Position of motif in Background100.5 +/- 62.9bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.32
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CPO(RRM)/Drosophila_melanogaster-RNCMPT00133-PBM/HughesRNA

Match Rank:1
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-TGCACT
NTGCACA
A C G T C G A T A C T G A G T C C G T A A G T C A C G T
C T G A G C A T A C T G A G T C C G T A A G T C C G T A

SNF(RRM)/Drosophila_melanogaster-RNCMPT00145-PBM/HughesRNA

Match Rank:2
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--TGCACT
ATTGCACA
A C G T A C G T C G A T A C T G A G T C C G T A A G T C A C G T
G C T A C G A T C G A T A C T G A G T C C G T A A G T C C T G A

Pr_0249(RRM)/Phytophthora_ramorum-RNCMPT00249-PBM/HughesRNA

Match Rank:3
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-TGCACT
TTGCACA
A C G T C G A T A C T G A G T C C G T A A G T C A C G T
A C G T A C G T A C T G A G T C C G T A A G T C C T G A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:4
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-TGCACT---
MRSCACTYAA
A C G T C G A T A C T G A G T C C G T A A G T C A C G T A C G T A C G T A C G T
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

SNRPA(RRM)/Homo_sapiens-RNCMPT00071-PBM/HughesRNA

Match Rank:5
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-TGCACT
TTGCACA
A C G T C G A T A C T G A G T C C G T A A G T C A C G T
C G A T C G A T A C T G A G T C C G T A A G T C C T G A

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-TGCACT---
AAGCACTTAA
A C G T C G A T A C T G A G T C C G T A A G T C A C G T A C G T A C G T A C G T
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-TGCACT---
AASCACTCAA
A C G T C G A T A C T G A G T C C G T A A G T C A C G T A C G T A C G T A C G T
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

MEC-8(RRM)/Caenorhabditis_elegans-RNCMPT00181-PBM/HughesRNA

Match Rank:8
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-TGCACT
NTGCACA
A C G T C G A T A C T G A G T C C G T A A G T C A C G T
C G T A C G A T A C T G A G T C C G T A A G T C C G T A

PB0099.1_Zfp691_1/Jaspar

Match Rank:9
Score:0.77
Offset:-6
Orientation:reverse strand
Alignment:------TGCACT-----
NNNNTGAGCACTGTNNG
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C T G A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer

Match Rank:10
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--TGCACT
NHNTCACT
A C G T A C G T C G A T A C T G A G T C C G T A A G T C A C G T
G C T A G A C T A G C T G C A T G A T C T G C A A T G C G A C T