Information for 2-GGAGATGAAGAA (Motif 2)

A C T G T C A G C G T A T A C G T G C A C G A T T C A G T C G A C T G A T A C G T C G A C G T A
Reverse Opposite:
G C A T A G C T A T G C G A C T A G C T A G T C G C T A A C G T A T G C G C A T A G T C T G A C
p-value:1e-48
log p-value:-1.120e+02
Information Content per bp:1.590
Number of Target Sequences with motif448.0
Percentage of Target Sequences with motif26.15%
Number of Background Sequences with motif5915.8
Percentage of Background Sequences with motif12.85%
Average Position of motif in Targets100.0 +/- 52.5bp
Average Position of motif in Background99.8 +/- 73.6bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TRA2(RRM)/Drosophila_melanogaster-RNCMPT00078-PBM/HughesRNA

Match Rank:1
Score:0.69
Offset:6
Orientation:forward strand
Alignment:GGAGATGAAGAA-
------GAAGAAG
A C T G T C A G C G T A T A C G T G C A C G A T T C A G T C G A C T G A T A C G T C G A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G C G T A C T G A A T C G C G T A C G T A A T C G

Unknown4/Arabidopsis-Promoters/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GGAGATGAAGAA
RAAGAMGAMG--
A C T G T C A G C G T A T A C G T G C A C G A T T C A G T C G A C T G A T A C G T C G A C G T A
C T A G C T G A T G C A C T A G C G T A G T A C C T A G T G C A G T C A T A C G A C G T A C G T

eor-1/MA0543.1/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GGAGATGAAGAA-
AGAGAGACGCAGAGA
A C G T A C G T A C T G T C A G C G T A T A C G T G C A C G A T T C A G T C G A C T G A T A C G T C G A C G T A A C G T
C T G A C T A G T C G A C T A G G C T A C T A G C T G A T A G C C T A G T A G C T G C A T C A G C T G A T A C G C T G A

RBM47(RRM)/Gallus_gallus-RNCMPT00279-PBM/HughesRNA

Match Rank:4
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GGAGATGAAGAA
---GATGATN--
A C T G T C A G C G T A T A C G T G C A C G A T T C A G T C G A C T G A T A C G T C G A C G T A
A C G T A C G T A C G T A C T G C G T A A C G T A T C G C G T A C G A T C G A T A C G T A C G T

ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer

Match Rank:5
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GGAGATGAAGAA-
---GATGATGATG
A C T G T C A G C G T A T A C G T G C A C G A T T C A G T C G A C T G A T A C G T C G A C G T A A C G T
A C G T A C G T A C G T C T A G C T G A C G A T T C A G C T G A C A G T A T C G C T G A C A G T A T C G

RIN(RRM)/Drosophila_melanogaster-RNCMPT00138-PBM/HughesRNA

Match Rank:6
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GGAGATGAAGAA
--AGATGATG--
A C T G T C A G C G T A T A C G T G C A C G A T T C A G T C G A C T G A T A C G T C G A C G T A
A C G T A C G T C T G A C T A G C G T A A C G T A C T G C T G A G C A T C T A G A C G T A C G T

ZKSCAN5/MA1652.1/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GGAGATGAAGAA
GGAGGAGGTGAGAA-
A C G T A C G T A C G T A C T G T C A G C G T A T A C G T G C A C G A T T C A G T C G A C T G A T A C G T C G A C G T A
C T A G T C A G C T G A C T A G T C A G T G C A C T A G C T A G A G C T T C A G T C G A C A T G T C G A T C G A A C G T

SNRNP70K(RRM)/Drosophila_melanogaster-RNCMPT00143-PBM/HughesRNA

Match Rank:8
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GGAGATGAAGAA
---GATCAAGA-
A C T G T C A G C G T A T A C G T G C A C G A T T C A G T C G A C T G A T A C G T C G A C G T A
A C G T A C G T A C G T C T A G C G T A A C G T A G T C C G T A G C T A A C T G G T C A A C G T

RLR1/RLR1_YPD/[](Harbison)/Yeast

Match Rank:9
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GGAGATGAAGAA---
---AAAGAAGAAAAT
A C T G T C A G C G T A T A C G T G C A C G A T T C A G T C G A C T G A T A C G T C G A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C G T A G C T A C T A G C G T A C T G A C T A G C G T A C G T A C G T A C G T A C A G T

PDR8/MA0354.1/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GGAGATGAAGAA
ACGGAGAT------
A C G T A C G T A C T G T C A G C G T A T A C G T G C A C G A T T C A G T C G A C T G A T A C G T C G A C G T A
T C A G A G T C A C T G A C T G C G T A T A C G C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T