Information for 5-GAGGATCC (Motif 11)

A C T G C G T A C T A G A C T G C T G A A C G T G T A C A G T C
Reverse Opposite:
C T A G A C T G G T C A G A C T G T A C A G T C A C G T A G T C
p-value:1e-10
log p-value:-2.337e+01
Information Content per bp:1.809
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif13.29%
Number of Background Sequences with motif1782.8
Percentage of Background Sequences with motif3.92%
Average Position of motif in Targets114.7 +/- 55.8bp
Average Position of motif in Background97.2 +/- 67.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NRG1/NRG1_H2O2Hi/[](Harbison)/Yeast

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GAGGATCC
-AGGGTCC
A C T G C G T A C T A G A C T G C T G A A C G T G T A C A G T C
A C G T T G C A A T C G A C T G C T A G G C A T A G T C A G T C

NRG1(MacIsaac)/Yeast

Match Rank:2
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:GAGGATCC
-AGGGTCC
A C T G C G T A C T A G A C T G C T G A A C G T G T A C A G T C
A C G T T C G A C T A G T C A G C A T G G C A T G A T C A G T C

SRSF1(RRM)/Homo_sapiens-RNCMPT00163-PBM/HughesRNA

Match Rank:3
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GAGGATCC
GGAGGAG--
A C G T A C T G C G T A C T A G A C T G C T G A A C G T G T A C A G T C
A C T G A C T G C T G A C T A G T C A G G T C A T A C G A C G T A C G T

LIN28A(CSD)/Homo_sapiens-RNCMPT00162-PBM/HughesRNA

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GAGGATCC
CGGAGGA---
A C G T A C G T A C T G C G T A C T A G A C T G C T G A A C G T G T A C A G T C
A G T C A T C G T A C G G T C A A T C G A T C G T C G A A C G T A C G T A C G T

SRSF1(RRM)/Homo_sapiens-RNCMPT00108-PBM/HughesRNA

Match Rank:5
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GAGGATCC
GGAGGAN--
A C G T A C T G C G T A C T A G A C T G C T G A A C G T G T A C A G T C
A C T G A C T G C G T A A T C G A C T G C T G A T C A G A C G T A C G T

SRSF1(RRM)/Homo_sapiens-RNCMPT00107-PBM/HughesRNA

Match Rank:6
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GAGGATCC
GGAGGAN--
A C G T A C T G C G T A C T A G A C T G C T G A A C G T G T A C A G T C
A C T G C T A G C G T A A C T G A C T G C T G A T G C A A C G T A C G T

NCU02404(RRM)/Neurospora_crassa-RNCMPT00238-PBM/HughesRNA

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GAGGATCC
GGAGGAA--
A C G T A C T G C G T A C T A G A C T G C T G A A C G T G T A C A G T C
A C T G A C T G C G T A A C T G A C T G C G T A C T G A A C G T A C G T

SRSF1(RRM)/Homo_sapiens-RNCMPT00109-PBM/HughesRNA

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GAGGATCC
GGAGGAN--
A C G T A C T G C G T A C T A G A C T G C T G A A C G T G T A C A G T C
A C T G A C T G C G T A A T C G A C T G C T G A T C G A A C G T A C G T

SF2(RRM)/Drosophila_melanogaster-RNCMPT00066-PBM/HughesRNA

Match Rank:9
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GAGGATCC
NGGAGGA---
A C G T A C G T A C T G C G T A C T A G A C T G C T G A A C G T G T A C A G T C
C T G A A C T G C T A G G C T A A C T G A C T G C T G A A C G T A C G T A C G T

TBS1/MA0404.1/Jaspar

Match Rank:10
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GAGGATCC-
-CGGATCCG
A C T G C G T A C T A G A C T G C T G A A C G T G T A C A G T C A C G T
A C G T G T A C A C T G A C T G C G T A C G A T A G T C A G T C A C T G