# Brief, non-exhaustive description of contents:

abbreviations.tex       LaTeX source code for 'Abbreviations' chapter of Thesis
abstract.tex            LaTeX source code for 'Abstract' chapter of Thesis
acknowledgments.tex     LaTeX source code for 'Acknowledgments' chapter of Thesis
appendix.tex            LaTeX source code for 'Appendix' chapter of Thesis
buildThesis.sh          compile PDF from LaTeX source files (bash script)
conclusion.tex          LaTeX source code for 'Conclusion' chapter of Thesis
discussion.tex          LaTeX source code for 'Discussion' chapter of Thesis
img/                    contains figures, plots and various graphics used in the thesis, including source Inkscape SVG files
introduction.tex        LaTeX source code for 'Introduction' chapter of Thesis
JLstyle.sty             LaTeX style specifications
'My Library.bib'        BibLaTeX bibliographic database (as exported from Zotero)
objectives.tex          LaTeX source code for 'Objectives' chapter of Thesis
ods/                    OpenOffice spreadsheets
pdf.input/              PDFs of included publications
pdf.output/             Output directory of pdflatex (including the Thesis PDF)
results.tex             LaTeX source code for 'Impact and authorship report of the publications' and 'Publications' chapters of Thesis
scripts/                Code used to generate tables and R plots
thesis.tex              Master LaTeX document
thesis.tks              Texmaker session file (loads all relevant .tex files into the editor)
titlepage.tex           LaTeX source code for title page of Thesis



# Build PDF from master LaTeX document in bash:
 ./buildThesis.sh