ENCODE Gene Expression Matrix (Oct. 2014) !!! WARNING !!! !!! These files are deprecated !!! !!! For up-to-date versions, see official ENCODE portal: !!! https://www.encodeproject.org/search/?type=Annotation&files.file_type=tsv&annotation_type=gene+expression Generated using STAR v. 2 (read mapping) and Flux Capacitor v. 1.6 (transcript quantifications, aggregated into gene expression values). The header contains the library IDs, the RNA fraction, the cell line name and the cell compartment. The values in the matrix cells are: RPKM1:RPKM2:npIDR where RPKMi is the RPKM of the gene in bioreplicate #i (i=1,2). We report the average of both when npIDR <= 0.1, NA otherwise. Contact: Julien Lagarde (julien.lagarde AT crg.eu)