1_Novel_Transcripts directory

Contains 4 files:
- novel_tr_mouse_supp_cage.gff.gz
- novel_tr_human_supp_cage.gff.gz  
- 38_mouse_tr_initid_exons_newid.gff  
- human.cuff_orthologs.ex.of.38.tr.new.gff  

The two gff.gz files are the cufflinks models that are supported by cage and novel (i.e. not monoexonic and with their 
intron chain neither equal nor included in the intron chain of any annotated long transcript)

The two gff files correspond to the 38 novel orthologous transcripts in mouse and human that are found
starting from the 38 mouse novel and cage supported cufflinks models that have a 1 to 1 ortholog in human
and where this ortholog in human has no stranded exonic overlap with any long transcript from Gencode v10
or Gencode v19 and no stranded exonic overlap with any human long transcript
The id in these files unable to know the correspondance between the transcript in mouse and the transcript
in human