############################################################
# RNASeq
#############################################################

track RNASeq
superTrack on show
shortLabel RNASeq
longLabel RNASeq
visibility 0


#=====================
# RNASeq non trypsin
#=====================

track RNASeq:wildType+
dragAndDrop subTracks
compositeTrack on
shortLabel RNASeq:wildType+
longLabel RNASeq:wildType+
parent RNASeq
type bigWig
viewLimits 0:80
autoScale on
maxHeightPixels 30
visibility 0
subGroup1 age age \
L3=L3 \
LP=late pupa \
WP=WP;
subGroup2 tissue tissue \
eye=eye \
antenna=antenna \
wing=wing \
leg=leg \
eye-antenna=eye-antenna;
subGroup3 view view \
+=+;
subGroup4 replicate replicate \
2=2 \
1=1;
sortOrder age=+ tissue=+ view=+ replicate=+
dimensions dimX=age dimY=tissue dimA=replicate

track WTW.1.UniqueMultiple.plusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/nontrypsin/WTW.1.UniqueMultiple.plusRaw.bw
shortLabel L3,wing,WTW.1,+
parent RNASeq:wildType+
color 55,126,184
type bigWig
subGroups age=L3 tissue=wing view=+ replicate=1

track WTW.2.UniqueMultiple.plusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/nontrypsin/WTW.2.UniqueMultiple.plusRaw.bw
shortLabel L3,wing,WTW.2,+
parent RNASeq:wildType+
color 55,126,184
type bigWig
subGroups age=L3 tissue=wing view=+ replicate=2

track fLL3.2.UniqueMultiple.plusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/nontrypsin/fLL3.2.UniqueMultiple.plusRaw.bw
shortLabel L3,leg,fLL3.2,+
parent RNASeq:wildType+
color 227,26,28
type bigWig
subGroups age=L3 tissue=leg view=+ replicate=2

track fELP.2.UniqueMultiple.plusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/nontrypsin/fELP.2.UniqueMultiple.plusRaw.bw
shortLabel LP,eye,fELP.2,+
parent RNASeq:wildType+
color 1,102,94
type bigWig
subGroups age=LP tissue=eye view=+ replicate=2

track fWLP.2.UniqueMultiple.plusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/nontrypsin/fWLP.2.UniqueMultiple.plusRaw.bw
shortLabel LP,wing,fWLP.2,+
parent RNASeq:wildType+
color 55,126,184
type bigWig
subGroups age=LP tissue=wing view=+ replicate=2

track fWLP.1.UniqueMultiple.plusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/nontrypsin/fWLP.1.UniqueMultiple.plusRaw.bw
shortLabel LP,wing,fWLP.1,+
parent RNASeq:wildType+
color 55,126,184
type bigWig
subGroups age=LP tissue=wing view=+ replicate=1


track fELP.1.UniqueMultiple.plusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/nontrypsin/fELP.1.UniqueMultiple.plusRaw.bw
shortLabel LP,eye,fELP.1,+
parent RNASeq:wildType+
color 1,102,94
type bigWig
subGroups age=LP tissue=eye view=+ replicate=1


track WTE.2.UniqueMultiple.plusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/nontrypsin/WTE.2.UniqueMultiple.plusRaw.bw
shortLabel L3,eye-antenna,WTE.2,+
parent RNASeq:wildType+
color 1,102,94
type bigWig
subGroups age=L3 tissue=eye-antenna view=+ replicate=2

track fLL3.1.UniqueMultiple.plusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/nontrypsin/fLL3.1.UniqueMultiple.plusRaw.bw
shortLabel L3,leg,fLL3.1,+
parent RNASeq:wildType+
color 227,26,28
type bigWig
subGroups age=L3 tissue=leg view=+ replicate=1

track WTE.1.UniqueMultiple.plusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/nontrypsin/WTE.1.UniqueMultiple.plusRaw.bw
shortLabel L3,eye-antenna,WTE.1,+
parent RNASeq:wildType+
color 1,102,94
type bigWig
subGroups age=L3 tissue=eye-antenna view=+ replicate=1


##################################
track RNASeq:wildType-
dragAndDrop subTracks
compositeTrack on
shortLabel RNASeq:wildType-
longLabel RNASeq:wildType-
parent RNASeq
type bigWig
viewLimits 0:80
autoScale on
negateValues on
maxHeightPixels 30
visibility 0
subGroup1 age age \
L3=L3 \
LP=late pupa \
WP=WP;
subGroup2 tissue tissue \
leg=leg \
antenna=antenna \
eye=eye \
wing=wing \
eye-antenna=eye-antenna;
subGroup3 view view \
-=-;
subGroup4 replicate replicate \
2=2 \
1=1;
sortOrder age=+ tissue=+ view=+ replicate=+
dimensions dimX=age dimY=tissue dimA=replicate

track fLL3.2.UniqueMultiple.minusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/nontrypsin/fLL3.2.UniqueMultiple.minusRaw.bw
shortLabel L3,leg,fLL3.2,-
parent RNASeq:wildType-
altColor 227,26,28
type bigWig
subGroups age=L3 tissue=leg view=- replicate=2

track fELP.2.UniqueMultiple.minusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/nontrypsin/fELP.2.UniqueMultiple.minusRaw.bw
shortLabel LP,eye,fELP.2,-
parent RNASeq:wildType-
altColor 1,102,94
type bigWig
subGroups age=LP tissue=eye view=- replicate=2

track fWLP.2.UniqueMultiple.minusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/nontrypsin/fWLP.2.UniqueMultiple.minusRaw.bw
shortLabel LP,wing,fWLP.2,-
parent RNASeq:wildType-
altColor 55,126,184
type bigWig
subGroups age=LP tissue=wing view=- replicate=2

track fWLP.1.UniqueMultiple.minusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/nontrypsin/fWLP.1.UniqueMultiple.minusRaw.bw
shortLabel LP,wing,fWLP.1,-
parent RNASeq:wildType-
altColor 55,126,184
type bigWig
subGroups age=LP tissue=wing view=- replicate=1


track fELP.1.UniqueMultiple.minusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/nontrypsin/fELP.1.UniqueMultiple.minusRaw.bw
shortLabel LP,eye,fELP.1,-
parent RNASeq:wildType-
altColor 1,102,94
type bigWig
subGroups age=LP tissue=eye view=- replicate=1

track WTE.2.UniqueMultiple.minusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/nontrypsin/WTE.2.UniqueMultiple.minusRaw.bw
shortLabel L3,eye-antenna,WTE.2,-
parent RNASeq:wildType-
altColor 1,102,94
type bigWig
subGroups age=L3 tissue=eye-antenna view=- replicate=2

track fLL3.1.UniqueMultiple.minusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/nontrypsin/fLL3.1.UniqueMultiple.minusRaw.bw
shortLabel L3,leg,fLL3.1,-
parent RNASeq:wildType-
altColor 227,26,28
type bigWig
subGroups age=L3 tissue=leg view=- replicate=1

track WTE.1.UniqueMultiple.minusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/nontrypsin/WTE.1.UniqueMultiple.minusRaw.bw
shortLabel L3,eye-antenna,WTE.1,-
parent RNASeq:wildType-
altColor 1,102,94
type bigWig
subGroups age=L3 tissue=eye-antenna view=- replicate=1


#=================
# RNASeq blistered
#=================

track RNASeq:mutants+
dragAndDrop subTracks
compositeTrack on
shortLabel RNASeq:mutants+
longLabel RNASeq:mutants+
parent RNASeq
type bigWig
viewLimits 0:80
autoScale on
maxHeightPixels 30
visibility 0
subGroup1 age age \
L3=L3 \
LP=late pupa;
subGroup2 tissue tissue \
eye=eye \
eye-antenna=eye-antenna \
wing=wing;
subGroup3 view view \
+=MultiplePlusRawSignal;
subGroup4 replicate replicate \
2=2 \
1=1 \
NA=NA;
sortOrder age=+ tissue=+ view=+ replicate=+
dimensions dimX=age dimY=tissue dimA=replicate

track bsELP.2.UniqueMultiple.plusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/blister/bsELP.2.UniqueMultiple.plusRaw.bw
shortLabel LP,eye,bsELP.2,+
parent RNASeq:mutants+
color 1,102,94
type bigWig
subGroups age=LP tissue=eye view=+ replicate=2

track bsELP.1.UniqueMultiple.plusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/blister/bsELP.1.UniqueMultiple.plusRaw.bw
shortLabel LP,eye,bsELP.1,+
parent RNASeq:mutants+
color 1,102,94
type bigWig
subGroups age=LP tissue=eye view=+ replicate=1

track bsW.2.UniqueMultiple.plusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/blister/bsW.2.UniqueMultiple.plusRaw.bw
shortLabel L3,wing,bsW.2,+
parent RNASeq:mutants+
color 55,126,184
type bigWig
subGroups age=L3 tissue=wing view=+ replicate=2

track bsE.2.UniqueMultiple.plusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/blister/bsE.2.UniqueMultiple.plusRaw.bw
shortLabel L3,eye-antenna,bsE.2,+
parent RNASeq:mutants+
color 1,102,94
type bigWig
subGroups age=L3 tissue=eye-antenna view=+ replicate=2

track bsE.1.UniqueMultiple.plusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/blister/bsE.1.UniqueMultiple.plusRaw.bw
shortLabel L3,eye-antenna,bsE.1,+
parent RNASeq:mutants+
color 1,102,94
type bigWig
subGroups age=L3 tissue=eye-antenna view=+ replicate=1

track bsWLP.2.UniqueMultiple.plusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/blister/bsWLP.2.UniqueMultiple.plusRaw.bw
shortLabel LP,wing,bsWLP.2,+
parent RNASeq:mutants+
color 55,126,184
type bigWig
subGroups age=LP tissue=wing view=+ replicate=2

track bsW.1.UniqueMultiple.plusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/blister/bsW.1.UniqueMultiple.plusRaw.bw
shortLabel L3,wing,bsW.1,+
parent RNASeq:mutants+
color 55,126,184
type bigWig
subGroups age=L3 tissue=wing view=+ replicate=1

track bsWLP.1.UniqueMultiple.plusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/blister/bsWLP.1.UniqueMultiple.plusRaw.bw
shortLabel LP,wing,bsWLP.1,+
parent RNASeq:mutants+
color 55,126,184
type bigWig
subGroups age=LP tissue=wing view=+ replicate=1

###################################
track RNASeq:mutants-
dragAndDrop subTracks
compositeTrack on
shortLabel RNASeq:mutants-
longLabel RNASeq:mutants-
parent RNASeq
type bigWig
viewLimits 0:80
autoScale on
negateValues on
maxHeightPixels 30
visibility 0
subGroup1 age age \
L3=L3 \
LP=late pupa;
subGroup2 tissue tissue \
eye=eye \
eye-antenna=eye-antenna \
wing=wing;
subGroup3 view view \
-=MultipleMinusRawSignal;
subGroup4 replicate replicate \
1=1 \
2=2 \
NA=NA;
sortOrder age=+ tissue=+ view=+ replicate=+
dimensions dimX=age dimY=tissue dimA=replicate

track bsELP.2.UniqueMultiple.minusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/blister/bsELP.2.UniqueMultiple.minusRaw.bw
shortLabel LP,eye,bsELP.2,-
parent RNASeq:mutants-
altColor 1,102,94
type bigWig
subGroups age=LP tissue=eye view=- replicate=2

track bsELP.1.UniqueMultiple.minusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/blister/bsELP.1.UniqueMultiple.minusRaw.bw
shortLabel LP,eye,bsELP.1,-
parent RNASeq:mutants-
altColor 1,102,94
type bigWig
subGroups age=LP tissue=eye view=- replicate=1

track bsW.2.UniqueMultiple.minusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/blister/bsW.2.UniqueMultiple.minusRaw.bw
shortLabel L3,wing,bsW.2,-
parent RNASeq:mutants-
altColor 55,126,184
type bigWig
subGroups age=L3 tissue=wing view=- replicate=2

track bsE.2.UniqueMultiple.minusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/blister/bsE.2.UniqueMultiple.minusRaw.bw
shortLabel L3,eye-antenna,bsE.2,-
parent RNASeq:mutants-
altColor 1,102,94
type bigWig
subGroups age=L3 tissue=eye-antenna view=- replicate=2

track bsE.1.UniqueMultiple.minusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/blister/bsE.1.UniqueMultiple.minusRaw.bw
shortLabel L3,eye-antenna,bsE.1,-
parent RNASeq:mutants-
altColor 1,102,94
type bigWig
subGroups age=L3 tissue=eye-antenna view=- replicate=1

track bsWLP.2.UniqueMultiple.minusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/blister/bsWLP.2.UniqueMultiple.minusRaw.bw
shortLabel LP,wing,bsWLP.2,-
parent RNASeq:mutants-
altColor 55,126,184
type bigWig
subGroups age=LP tissue=wing view=- replicate=2

track bsW.1.UniqueMultiple.minusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/blister/bsW.1.UniqueMultiple.minusRaw.bw
shortLabel L3,wing,bsW.1,-
parent RNASeq:mutants-
altColor 55,126,184
type bigWig
subGroups age=L3 tissue=wing view=- replicate=1

track bsWLP.1.UniqueMultiple.minusRaw.bw
bigDataUrl http://genome.crg.es/~cklein/dmel/UCSC_tracks/RNAseq/blister/bsWLP.1.UniqueMultiple.minusRaw.bw
shortLabel LP,wing,bsWLP.1,-
parent RNASeq:mutants-
altColor 55,126,184
type bigWig
subGroups age=LP tissue=wing view=- replicate=1