This directory contains sequences and genome coordinates of putative polyA signals used in the GENCODE Capture Long-Seq project.

All files correspond to genome assemblies hg38 and mm10.


# File list:
	hg38.polyAsignals.bed.gz: BED file of human (hg38) polyA signal coordinates
	mm10.polyAsignals.bed.gz: BED file of mouse (mm10) polyA signal coordinates
	signals.list.txt: list of putative polyA signal sequences (taken from Lopez et al., 2006, doi:  10.1261/rna.136206)


# BED file format (BED6):

There is one sequence motif per BED record. All genomic occurrences of the motifs present in signals.list.txt are reported.

    column 1: chromosome 
    column 2: chromosome start of polyA signal
    column 3: chromosome end of polyA signal
    column 4: motif identifier (<sequence>.<chrom_start>_<chrom_end>_<strand>)
    column 5: always '0'
    column 6: genomic strand of the sequence motif