This directory contains the genome coordinates of PacBio introns observed in the GENCODE Capture Long-Seq project, in GTF format.

Only canonical (GT|GC / AG) introns are reported.

Only reads mapping uniquely in the genome, and whose entire chain of introns is canonical, were used.

There is one record per intron and read. This means a given intron (as identified by its chromosome, start, end, strand genome coordinates) can be present multiple times.

All files correspond to genome assemblies hg38 and mm10.

# File naming scheme:

<species>All_Cap1_<tissue>_allCanonicalIntrons.gff.gz

where:
	species:
		"mm": mouse
		"hs": human

	tissue: self-explanatory

# File format:

Standard GTF, with intron records only. 
The originating PacBio read identifier is reported in both the "gene_id" and "transcript_id" attributes. 
The gene biotype of the originating read is specified in the "overlapping_gene_types" attribute.