This directory contains BED files of raw Transcription Start Sites generated within the GENCODE Capture Long-Seq project using PacBio HCGM reads.

They simply correspond to extracted 5' ends of all HCGM reads, and are NOT MERGED.

All files correspond to genome assemblies hg38 and mm10.


# File naming scheme:

<species>All_Cap1_<tissue>_TSSs.bed

where:
	species:
		"mm": mouse
		"hs": human

	tissue: self-explanatory.

# BED file format (BED6):

There is one TSS per BED record.

    column 1: chromosome 
    column 2: chromosome start of TSS
    column 3: chromosome end of TSS
    column 4: identifier of the corresponding read
    column 5: always '0'
    column 6: genomic strand of the TSS (the same as the corresponding read