miRDeep2

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Parameters used


miRDeep2 version2.0.1.2
Program call/usr/local/bin/miRDeep2.pl HCM-21_collapsed.fa GRCh38.primary_assembly.genome.fa_clean.fa.fasta HCM-21_reads_collapsed_vs_GRCh38.primary_assembly.genome.fa_genome.arf mature.fa_igenome.fa_idx.fa none hairpin.fa_igenome.fa_idx.fa
ReadsHCM-21_collapsed.fa
GenomeGRCh38.primary_assembly.genome.fa_clean.fa.fasta
MappingsHCM-21_reads_collapsed_vs_GRCh38.primary_assembly.genome.fa_genome.arf
Reference mature miRNAsmature.fa_igenome.fa_idx.fa
Other mature miRNAsnone


Survey of miRDeep2 performance for score cut-offs -10 to 10
novel miRNAsknown miRBase miRNAs
miRDeep2 scorefor details on how the log-odds score is calculated, see Friedlander et al., Nature Biotechnology, 2008. predicted by miRDeep2novel miRNA hairpins are here defined by not having any of the reference mature miRNAs mapping perfectly (full length, no mismatches). The numbers show how many novel miRNA hairpins have a score equal to or exceeding the cut-off. estimated false positivesnumber of false positive miRNA hairpins predicted at this cut-off, as estimated by the miRDeep2 controls (see Friedlander et al., Nature Biotechnology, 2008). Mean and standard deviation is estimated from 100 rounds of permuted controls. estimated true positivesthe number of true positive miRNA hairpins is estimated as t = total novel miRNAs - false positive novel miRNAs. The percentage of the predicted novel miRNAs that is estimated to be true positives is calculated as p = t / total novel miRNAs. The number of false positives is estimated from 100 rounds of permuted controls. In each of the 100 rounds, t and p are calculated, generating mean and standard deviation of t and p. The variable p can be used as an estimation of miRDeep2 positive predictive value at the score cut-off. in speciesnumber of reference mature miRNAs for that species given as input to miRDeep2. in datanumber of reference mature miRNAs for that species that map perfectly (full length, no mismatches) to one or more of precursor candidates that have been excised from the genome by miRDeep2. detected by miRDeep2number of reference mature miRNAs for that species that map perfectly (full length, no mismatches) to one or more of predicted miRNA hairpins that have a score equal to or exceeding the cut-off. The percentage of reference mature miRNAs in data that is detected by miRDeep2 is calculated as s = reference mature miRNAs detected / reference mature miRNAs in data. s can be used as an estimation of miRDeep2 sensitivity at the score cut-off. estimated signal-to-noisefor the given score cut-off, the signal-to-noise ratio is estimated as r = total miRNA hairpins reported / mean estimated false positive miRNA hairpins over 100 rounds of permuted controls. excision gearingthis is the minimum read stack height required for excising a potential miRNA precursor from the genome in this analysis.
1000 ± 00 ± 0 (0 ± 0%)265651455 (11%)34.51
900 ± 00 ± 0 (0 ± 0%)265651457 (11%)34.11
800 ± 00 ± 0 (0 ± 0%)265651457 (11%)32.61
700 ± 00 ± 0 (0 ± 0%)265651461 (12%)331
600 ± 00 ± 0 (0 ± 0%)265651463 (12%)33.31
500 ± 00 ± 0 (0 ± 0%)265651463 (12%)32.71
400 ± 00 ± 0 (0 ± 0%)265651465 (13%)31.81
300 ± 00 ± 0 (0 ± 0%)265651471 (14%)14.51
231 ± 12 ± 1 (68 ± 33%)2656514166 (32%)7.61
155 ± 21 ± 1 (19 ± 24%)2656514211 (41%)5.11
0616 ± 40 ± 0 (0 ± 0%)2656514235 (46%)2.91
-11022 ± 40 ± 0 (0 ± 0%)2656514260 (51%)2.51
-21933 ± 50 ± 0 (0 ± 0%)2656514308 (60%)2.41
-36454 ± 610 ± 6 (15 ± 9%)2656514406 (79%)2.71
-496110 ± 90 ± 1 (0 ± 1%)2656514438 (85%)21
-5113239 ± 110 ± 0 (0 ± 0%)2656514445 (87%)1.21
-6130297 ± 110 ± 0 (0 ± 0%)2656514449 (87%)11
-7194345 ± 110 ± 0 (0 ± 0%)2656514464 (90%)1.11
-8249376 ± 110 ± 0 (0 ± 0%)2656514465 (90%)1.11
-9274392 ± 120 ± 0 (0 ± 0%)2656514465 (90%)1.11
-10298406 ± 120 ± 0 (0 ± 0%)2656514465 (90%)1.21





novel miRNAs predicted by miRDeep2


provisional idthis is a provisional miRNA name assigned by miRDeep2. The first part of the id designates the chromosome or genome contig on which the miRNA gene is located. The second part is a running number that is added to avoid identical ids. The running number is incremented by one for each potential miRNA precursor that is excised from the genome. Clicking this field will display a pdf of the structure, read signature and score breakdown of the reported miRNA. miRDeep2 scorethe log-odds score assigned to the hairpin by miRDeep2 estimated probability that the miRNA candidate is a true positivethe estimated probability that a predicted novel miRNA with a score of this or higher is a true positive. To see exactly how this probability is estimated, mouse over the 'novel miRNAs, true positives' in the table at the top of the webpage. rfam alertthis field indicates if the predicted miRNA hairpin has sequence similarity to reference rRNAs or tRNAs. Warnings in this field should overrule the estimated probability that a reported miRNA is a true positive (previous field). total read countthis is the sum of read counts for the predicted mature, loop and star miRNAs. mature read countthis is the number of reads that map to the predicted miRNA hairpin and are contained in the sequence covered by the predicted mature miRNA, including 2 nts upstream and 5 nts downstream. loop read countthis is the number of reads that map to the predicted miRNA hairpin and are contained in the sequence covered by the predicted miRNA loop, including 2 nts upstream and 5 nts downstream. star read countthis is the number of reads that map to the predicted miRNA hairpin and are contained in the sequence covered by the predicted star miRNA, including 2 nts upstream and 5 nts downstream. significant randfold p-valuethis field indicates if the estimated randfold p-value of the excised potential miRNA hairpin is equal to or lower than 0.05 (see Bonnet et al., Bioinformatics, 2004). miRBase miRNAthis field displays the ids of any reference mature miRNAs for the species that map perfectly (full length, no mismatches) to the reported miRNA hairpin. If this is the case, the reported miRNA hairpin is assigned as a known miRNA. If not, it is assigned as a novel miRNA. If more than one reference mature miRNA maps to the miRNA hairpin, then only the id of the reference miRBase miRNA that matches the predicted mature sequence is output. example miRBase miRNA with the same seedthis field displays the ids of any reference mature miRNAs from related species that have a seed sequence identical to that of the reported mature miRNA. The seed is here defined as nucleotides 2-8 from the 5' end of the mature miRNA. If more than one reference mature miRNA have identical seed, then only the id of the miRNA that occurs last in the input file of reference mature miRNAs from related species is displayed. UCSC browserif a species name was input to miRDeep2, then clicking this field will initiate a UCSC blat search of the consensus precursor sequence against the reference genome. NCBI blastnclicking this field will initiate a NCBI blastn search of the consensus precursor sequence against the nr/nt database (non-redundant collection of all NCBI nucleotide sequences). consensus mature sequencethis is the consensus mature miRNA sequence as inferred from the deep sequencing reads. consensus star sequencethis is the consensus star miRNA sequence as inferred from the deep sequencing reads. consensus precursor sequencethis is the consensus precursor miRNA sequence as inferred from the deep sequencing reads. Note that this is the inferred Drosha hairpin product, and therefore does not include substantial flanking genomic sequence as does most miRBase precursors. precursor coordinateThe given precursor coordinates refer do absolute position in the mapped reference sequence
chr22_3488 2.8 0.68 ± 0.33 42 42 0 0 yes blast uugaggucggacaugguggcu ccaccacgccuggccuaagagu ccaccacgccuggccuaagaguguguuucuuaaagguaaagacuugaggucggacaugguggcu chr22:40956704..40956768:-
chr11_2181 2.2 0.68 ± 0.33 30 30 0 0 yes blast ggaggggcagagagcgagc caccucucacucucaccuc ggaggggcagagagcgagcgauggcugcuagcacguugucaccucucacucucaccuc chr11:122556630..122556688:-
chr22_3461 2.1 0.68 ± 0.33 101 101 0 0 yes blast gaugccugggaguugcgaucug ggucgcccucaaggugaccc ggucgcccucaaggugacccgccuacuuugcgggaugccugggaguugcgaucug chr22:42615334..42615389:+
chr16_2817 1.3 0.19 ± 0.24 9 9 0 0 yes blast ucaaggggcaguuaaagggagu ucccuuuaacugccccuuggca ucaaggggcaguuaaagggaguggacugccccucccuuuaacugccccuuggca chr16:87840914..87840968:-
chr10_1938 1.1 0.19 ± 0.24 10 10 0 0 yes blast aggugggaggcaaguggcu ugggcugugugcaucuga ugggcugugugcaucugaauugcagguugaauccaacaacaucagugaggugggaggcaaguggcu chr10:77311979..77312045:-
chr11_2172 0.2 0.00 ± 0.00 7 7 0 0 yes blast ucagcguugguucccgucuug ggacgggagcugcggcgcuggcu ggacgggagcugcggcgcuggcuacgagagugacccagucagcguugguucccgucuug chr11:113773669..113773728:-



mature miRBase miRNAs detected by miRDeep2


tag idthis is a tag id assigned by miRDeep2. The first part of the id designates the chromosome or genome contig on which the miRNA gene is located. The second part is a running number that is added to avoid identical ids. The running number is incremented by one for each potential miRNA precursor that is excised from the genome. Clicking this field will display a pdf of the structure, read signature and score breakdown of the miRNA. miRDeep2 scorethe log-odds score assigned to the hairpin by miRDeep2 estimated probability that the miRNA is a true positivethe estimated probability that a predicted miRNA with a score of this or higher is a true positive. To see exactly how this probability is estimated, mouse over the 'novel miRNAs, true positives' in the table at the top of the webpage. For miRBase miRNAs, this reflects the support that the data at hand lends to the miRNA. rfam alertthis field indicates if the miRNA hairpin has sequence similarity to reference rRNAs or tRNAs. Warnings in this field should overrule the estimated probability that a reported miRNA is a true positive (previous field). predicted mature seq. in accordance with miRBase mature seq.If the predicted miRDeep2 sequence overlaps with the miRBase annotated mature sequence than this is indicated by 'TRUE'. If the predicted miRDeep2 star sequence overlaps with the miRBase annotated mature sequence this is inidicated by 'STAR'. total read countthis is the sum of read counts for the mature, loop and star miRNAs. mature read countthis is the number of reads that map to the miRNA hairpin and are contained in the sequence covered by the consensus mature miRNA, including 2 nts upstream and 5 nts downstream. loop read countthis is the number of reads that map to the miRNA hairpin and are contained in the sequence covered by the consensus miRNA loop, including 2 nts upstream and 5 nts downstream. star read countthis is the number of reads that map to the miRNA hairpin and are contained in the sequence covered by the consensus star miRNA, including 2 nts upstream and 5 nts downstream. significant randfold p-valuethis field indicates if the estimated randfold p-value of the miRNA hairpin is equal to or lower than 0.05 (see Bonnet et al., Bioinformatics, 2004). mature miRBase miRNAthis field displays the ids of any reference mature miRNAs for the species that map perfectly (full length, no mismatches) to the reported miRNA hairpin. If this is the case, the reported miRNA hairpin is assigned as a known miRNA. If not, it is assigned as a novel miRNA. If more than one reference mature miRNA maps to the miRNA hairpin, then only the id of the reference miRBase miRNA that matches the predicted mature sequence is output. example miRBase miRNA with the same seedthis field displays the ids of any reference mature miRNAs from related species that have a seed sequence identical to that of the reported mature miRNA. The seed is here defined as nucleotides 2-8 from the 5' end of the mature miRNA. If more than one reference mature miRNA have identical seed, then only the id of the miRNA that occurs last in the input file of reference mature miRNAs from related species is displayed. UCSC browserif a species name was input to miRDeep2, then clicking this field will initiate a UCSC blat search of the consensus precursor sequence against the reference genome. NCBI blastnclicking this field will initiate a NCBI blastn search of the consensus precursor sequence against the nr/nt database (non-redundant collection of all NCBI nucleotide sequences). consensus mature sequencethis is the consensus mature miRNA sequence as inferred from the deep sequencing reads. consensus star sequencethis is the consensus star miRNA sequence as inferred from the deep sequencing reads. consensus precursor sequencethis is the consensus precursor miRNA sequence as inferred from the deep sequencing reads. Note that this is the inferred Drosha hairpin product, and therefore does not include substantial flanking genomic sequence as does most miRBase precursors. precursor coordinateThe given precursor coordinates refer do absolute position in the mapped reference sequence
chr3_604 7.6e+4 0.00 ± 0.00 TRUE 149267 149266 0 1 yes hsa-miR-16-5p blast uagcagcacguaaauauuggcg ccaauauuacugugcugcuuu uagcagcacguaaauauuggcguagugaaauauauauuaaacaccaauauuacugugcugcuuu chr3:160404753..160404817:+
chr8_1629 1.1e+4 0.00 ± 0.00 TRUE 21690 21363 0 327 yes hsa-miR-486-5p blast uccuguacugagcugccccgag cggggcagcucaguacagga uccuguacugagcugccccgaggcccuucaugcugcccagcucggggcagcucaguacagga chr8:41660443..41660505:-
chr8_1548 1.1e+4 0.00 ± 0.00 TRUE 21599 21309 0 290 yes hsa-miR-486-5p blast uccuguacugagcugccccgag cggggcagcucaguacagga uccuguacugagcugccccgagcugggcagcaugaagggccucggggcagcucaguacagga chr8:41660443..41660505:+
chr17_2852 1.0e+4 0.00 ± 0.00 TRUE 21534 21529 0 5 yes hsa-miR-423-5p blast ugaggggcagagagcgagacuuu agcucggucugaggccccuca ugaggggcagagagcgagacuuuucuauuuuccaaaagcucggucugaggccccuca chr17:30117094..30117151:+
chr7_1459 3.6e+3 0.00 ± 0.00 TRUE 7095 7090 0 5 yes hsa-miR-93-5p blast caaagugcuguucgugcagguag acugcugagcuagcacuucccga caaagugcuguucgugcagguagugugauuacccaaccuacugcugagcuagcacuucccga chr7:100093775..100093837:-
chr9_1781 3.4e+3 0.00 ± 0.00 STAR 6769 5684 0 1085 yes hsa-miR-126-5p blast cguaccgugaguaauaaugcg cauuauuacuuuugguacgcg cauuauuacuuuugguacgcgcugugacacuucaaacucguaccgugaguaauaaugcg chr9:136670615..136670674:+
chr8_1681 3.1e+3 0.00 ± 0.00 TRUE 6091 6021 0 70 yes hsa-miR-151b blast ucgaggagcucacagucuagu cuagacugaagcuccuugagg ucgaggagcucacagucuaguaugucucauccccuacuagacugaagcuccuugagg chr8:140732586..140732643:-
chr9_1752 2.7e+3 0.00 ± 0.00 TRUE 5393 5387 0 6 yes hsa-let-7d-5p blast agagguaguagguugcauagu cuauacgaccugcugccuuuc agagguaguagguugcauaguuuuagggcagggauuuugcccacaaggagguaacuauacgaccugcugccuuuc chr9:94178840..94178915:+
chr1_38 1.3e+3 0.00 ± 0.00 TRUE 2655 2564 2 89 yes hsa-miR-30e-5p blast uguaaacauccuugacuggaagcu cuuucagucggauguuuacagc uguaaacauccuugacuggaagcuguaagguguucagaggagcuuucagucggauguuuacagc chr1:40754370..40754434:+
chr3_647 1.2e+3 0.00 ± 0.00 TRUE 2401 2400 0 1 yes hsa-miR-191-5p blast caacggaaucccaaaagcagcu cugcgcuuggauuucguccccu caacggaaucccaaaagcagcuguugucuccagagcauuccagcugcgcuuggauuucguccccu chr3:49020629..49020694:-
chr8_1671 5.2e+2 0.00 ± 0.00 TRUE 1034 1033 0 1 yes hsa-miR-30d-5p blast uguaaacauccccgacuggaagcu cuuucagucagauguuugcu uguaaacauccccgacuggaagcuguaagacacagcuaagcuuucagucagauguuugcu chr8:134804880..134804940:-
chr13_2382 3.0e+2 0.00 ± 0.00 TRUE 602 593 0 9 yes hsa-miR-20a-5p blast uaaagugcuuauagugcagguag acugcauuaugagcacuuaaagu uaaagugcuuauagugcagguaguguuuaguuaucuacugcauuaugagcacuuaaagu chr13:91351071..91351130:+
chr17_2949 1.9e+2 0.00 ± 0.00 TRUE 386 383 0 3 yes hsa-miR-4732-5p blast uguagagcagggagcaggaagcu gcccugaccuguccuguucugcc uguagagcagggagcaggaagcuguguguguccagcccugaccuguccuguucugcc chr17:28861665..28861722:-
chr13_2383 1.7e+2 0.00 ± 0.00 STAR 343 340 0 3 yes hsa-miR-92a-1-5p blast uauugcacuugucccggccugu agguugggaucgguugcaaugcu agguugggaucgguugcaaugcuguguuucuguaugguauugcacuugucccggccugu chr13:91351323..91351382:+
chrX_3587 1.1e+2 0.00 ± 0.00 STAR 219 218 0 1 yes hsa-miR-652-5p blast aauggcgccacuaggguugugc acaacccuaggagagggugccauuca acaacccuaggagagggugccauucacauagacuauaauugaauggcgccacuaggguugugc chrX:110055347..110055410:+
chr13_2378 1.0e+2 0.00 ± 0.00 TRUE 195 160 0 35 yes hsa-miR-17-5p blast caaagugcuuacagugcagguag acugcagugaaggcacuugua caaagugcuuacagugcagguagugauaugugcaucuacugcagugaaggcacuugua chr13:91350617..91350675:+
chr7_1458 7.3e+1 0.00 ± 0.00 STAR 149 141 0 8 no hsa-miR-25-5p blast cauugcacuugucucggucuga aggcggagacuugggcaauug aggcggagacuugggcaauugcuggacgcugcccugggcauugcacuugucucggucuga chr7:100093570..100093630:-
chr7_1461 6.7e+1 0.00 ± 0.00 TRUE 129 123 0 6 yes hsa-miR-106b-5p blast uaaagugcugacagugcaga ccgcacuguggguacuugcu uaaagugcugacagugcagauagugguccucuccgugcuaccgcacuguggguacuugcu chr7:100094003..100094063:-
chr4_737 6.0e+1 0.00 ± 0.00 TRUE 115 114 0 1 yes hsa-miR-574-5p blast ugagugugugugugugagugugu cacgcucaugcacacacccaca ugagugugugugugugagugugugucgcuccggguccacgcucaugcacacacccaca chr4:38868055..38868113:+
chr11_2151 4.5e+1 0.00 ± 0.00 TRUE 85 81 0 4 yes hsa-miR-139-5p blast ucuacagugcacgugucuccagu uggagacgcggcccuguuggagu ucuacagugcacgugucuccaguguggcucggaggcuggagacgcggcccuguuggagu chr11:72615065..72615124:-
chrX_3540 2.9e+1 0.00 ± 0.00 TRUE 58 54 0 4 yes hsa-miR-532-5p blast caugccuugaguguaggaccgu ccucccacacccaaggcuugca caugccuugaguguaggaccguuggcaucuuaauuacccucccacacccaaggcuugca chrX:50003166..50003225:+
chr7_1336 2.5e+1 0.00 ± 0.00 TRUE 47 46 0 1 yes hsa-miR-550a-3-5p blast ugccugagggaguaagagcc ugucuuacucccucaggcaca ugccugagggaguaagagcccuguuguugucagauagugucuuacucccucaggcaca chr7:32733003..32733061:+
chr7_1334 2.5e+1 0.00 ± 0.00 TRUE 47 46 0 1 yes hsa-miR-550a-3-5p blast ugccugagggaguaagagcc ugucuuacucccucaggcaca ugccugagggaguaagagcccuguuguuguaagauagugucuuacucccucaggcaca chr7:30289816..30289874:+
chr6_1279 2.2e+1 0.00 ± 0.00 TRUE 41 36 0 5 yes hsa-miR-30a-5p blast uguaaacauccucgacuggaagcu uuucagucggauguuugcagcu uguaaacauccucgacuggaagcugugaagccacagaugggcuuucagucggauguuugcagcu chr6:71403552..71403616:-
chr17_2913 2.2e+1 0.00 ± 0.00 TRUE 49 47 0 2 no hsa-miR-324-5p blast cgcauccccuagggcauuggug ccacugccccaggugcugcug cgcauccccuagggcauugguguaaagcuggagacccacugccccaggugcugcug chr17:7223308..7223364:-
chr16_2737 1.8e+1 0.00 ± 0.00 TRUE 32 9 0 23 yes hsa-miR-140-5p blast cagugguuuuacccuaugguag accacaggguagaaccacgga cagugguuuuacccuaugguagguuacgucaugcuguucuaccacaggguagaaccacgga chr16:69933102..69933163:+
chr1_30 1.3e+1 0.00 ± 0.00 STAR 23 20 0 3 yes hsa-miR-1976 blast uggcagcaaggaaggcaggggu ccuccugcccuccuugcugu uggcagcaaggaaggcagggguccuaagguguguccuccugcccuccuugcugu chr1:26554539..26554593:+
chr3_618 1.2e+1 0.00 ± 0.00 STAR 22 15 0 7 yes hsa-miR-28-5p blast cacuagauugugagcuccugg aaggagcucacagucuauugag aaggagcucacagucuauugaguuaccuuucugacuuucccacuagauugugagcuccugg chr3:188688793..188688854:+
chr1_99 1.0e+1 0.00 ± 0.00 STAR 16 9 0 7 yes hsa-miR-92b-5p blast uauugcacucgucccggccucc agggacgggacgcggugcag agggacgggacgcggugcaguguuguuuuuucccccgccaauauugcacucgucccggccucc chr1:155195195..155195258:+
chr19_3239 9.7 0.00 ± 0.00 TRUE 15 14 0 1 yes hsa-miR-150-5p blast ucucccaacccuuguaccagu cugguacaggccugggggaca ucucccaacccuuguaccagugcugggcucagacccugguacaggccugggggaca chr19:49500797..49500853:-
chr1_71 7.8 0.00 ± 0.00 STAR 12 8 0 4 yes hsa-miR-197-5p blast uucaccaccuucuccacccagc cggguagagagggcagugggag cggguagagagggcagugggagguaagagcucuucacccuucaccaccuucuccacccagc chr1:109598900..109598961:+
chrX_3639 7.6 0.00 ± 0.00 TRUE 13 10 0 3 yes hsa-miR-374a-5p blast uuauaauacaaccugauaagu cuuaucagauuguauuguaau uuauaauacaaccugauaaguguuauagcacuuaucagauuguauuguaau chrX:74287295..74287346:-
chr9_1838 6.6 0.00 ± 0.00 STAR 10 7 0 3 yes hsa-miR-32-5p blast caauuuagugugugugauauu uauugcacauuacuaaguugca uauugcacauuacuaaguugcauguugucacggccucaaugcaauuuagugugugugauauu chr9:109046231..109046293:-
chr8_1669 4.6 0.00 ± 0.00 TRUE 7 4 0 3 yes hsa-miR-30b-5p blast uguaaacauccuacacucagcu cugggagguggauguuuacuuc uguaaacauccuacacucagcuguaauacauggauuggcugggagguggauguuuacuuc chr8:134800531..134800591:-
chr1_39 3.5 0.00 ± 0.00 STAR 5 2 0 3 yes hsa-miR-30c-5p blast cugggagaggguuguuuacucc uguaaacauccuacacucucagcu uguaaacauccuacacucucagcugugagcucaagguggcugggagaggguuguuuacucc chr1:40757299..40757360:+
chr14_2474 3.4 0.00 ± 0.00 TRUE 12 12 0 0 yes hsa-miR-625-5p blast agggggaaaguucuauaguc cuauagaacuuucccccuca agggggaaaguucuauaguccuguaauuagaucucaggacuauagaacuuucccccuca chr14:65471115..65471174:+
chr14_2537 3.2 0.00 ± 0.00 TRUE 12 12 0 0 yes hsa-miR-625-5p blast agggggaaaguucuauaguc cuauagaacuuucccccuca agggggaaaguucuauaguccugagaucuaauuacaggacuauagaacuuucccccuca chr14:65471113..65471172:-
chr15_2657 3.1 0.00 ± 0.00 TRUE 249 249 0 0 yes hsa-miR-629-5p blast uggguuuacguugggagaacu uucucccaacguaagcccagc uggguuuacguugggagaacuuuuacggugaaccaggagguucucccaacguaagcccagc chr15:70079386..70079447:-
chr5_989 2.9 0.68 ± 0.33 STAR 34 34 0 0 yes hsa-miR-378a-5p blast acuggacuuggagucagaagg uccugacuccagguccugugu uccugacuccagguccuguguguuaccuagaaauagcacuggacuuggagucagaagg chr5:149732829..149732887:+
chr1_82 2.9 0.68 ± 0.33 TRUE 15 15 0 0 yes hsa-miR-942-5p blast uucucuguuuuggccaugugug cacauggccgaaacagagaagu uucucuguuuuggccauguguguacucacagccccucacacauggccgaaacagagaagu chr1:117094656..117094716:+
chr5_992 2.8 0.68 ± 0.33 TRUE 68 68 0 0 yes hsa-miR-1294 blast ugugagguuggcauuguugu aacagugccaaccucacagg ugugagguuggcauuguugucuggcauugucugauauacaacagugccaaccucacagg chr5:154347152..154347211:+
chr17_2856 2.7 0.68 ± 0.33 TRUE 20 20 0 0 yes hsa-miR-193a-5p blast ugggucuuugcgggcgagauga aacuggccuacaaagucccagu ugggucuuugcgggcgagaugagggugucggaucaacuggccuacaaagucccagu chr17:31560015..31560071:+
chr22_3468 2.7 0.68 ± 0.33 TRUE 183530 183530 0 0 yes hsa-let-7b-5p blast ugagguaguagguuguguggu uauacaaccuacugccuuccc ugagguaguagguugugugguuucagggcagugauguugccccucggaagauaacuauacaaccuacugccuuccc chr22:46113690..46113766:+
chr3_546 2.7 0.68 ± 0.33 TRUE 3867 3867 0 0 yes hsa-miR-26a-5p blast uucaaguaauccaggauaggcu ccuauucuugguuacuugcacg uucaaguaauccaggauaggcugugcaggucccaaugggccuauucuugguuacuugcacg chr3:37969412..37969473:+
chr22_3438 2.7 0.68 ± 0.33 TRUE 11 7 0 4 no hsa-miR-1306-5p blast ccaccuccccugcaaacgucc gacguuggcucuggugguga ccaccuccccugcaaacguccaguggugcagagguaauggacguuggcucuggugguga chr22:20086071..20086130:+
chr8_1612 2.6 0.68 ± 0.33 STAR 1840 1840 0 0 yes hsa-miR-320a-5p blast aaaagcuggguugagagggcga gccuucucuucccgguucuucc gccuucucuucccgguucuucccggagucgggaaaagcuggguugagagggcga chr8:22244974..22245028:-
chr8_1530 2.6 0.68 ± 0.33 STAR 2 1 0 1 yes hsa-miR-4659a-5p blast ucuucuuagacauggcaac cugccaugucuaagaagaa cugccaugucuaagaagaaaacuuuggagaaaaauuuucuucuuagacauggcaac chr8:6745176..6745232:+
chr22_3436 2.6 0.68 ± 0.33 TRUE 3417 3417 0 0 yes hsa-miR-185-5p blast uggagagaaaggcaguuccuga aggggcuggcuuuccucuggu uggagagaaaggcaguuccugaugguccccuccccaggggcuggcuuuccucuggu chr22:20033152..20033208:+
chrX_3631 2.6 0.68 ± 0.33 TRUE 4400 4400 0 0 yes hsa-miR-98-5p blast ugagguaguaaguuguauugu uauacaacuuacuacuuuccc ugagguaguaaguuguauuguugugggguagggauauuaggccccaauuagaagauaacuauacaacuuacuacuuuccc chrX:53556240..53556320:-
chr2_410 2.5 0.68 ± 0.33 TRUE 4274 4274 0 0 yes hsa-miR-26b-5p blast uucaaguaauucaggauaggu cuguucuccauuacuuggcu uucaaguaauucaggauagguugugugcuguccagccuguucuccauuacuuggcu chr2:218402656..218402712:+
chr9_1750 2.5 0.68 ± 0.33 TRUE 50325 50325 0 0 yes hsa-let-7f-5p blast ugagguaguagauuguauagu uauacaaucuauugccuuccc ugagguaguagauuguauaguugugggguagugauuuuacccuguucaggagauaacuauacaaucuauugccuuccc chr9:94176352..94176430:+
chr14_2488 2.5 0.68 ± 0.33 TRUE 129 61 0 68 yes hsa-miR-342-5p blast aggggugcuaucugugauugagg ucucacacagaaaucgcacccguc aggggugcuaucugugauugagggacaugguuaauggaauugucucacacagaaaucgcacccguc chr14:100109672..100109738:+
chr12_2222 2.5 0.68 ± 0.33 TRUE 31094 31094 0 0 yes hsa-let-7i-5p blast ugagguaguaguuugugcuguu cugcgcaagcuacugccuugcu ugagguaguaguuugugcuguuggucggguugugacauugcccgcuguggagauaacugcgcaagcuacugccuugcu chr12:62603690..62603768:+
chr19_3188 2.5 0.68 ± 0.33 TRUE 377 377 0 0 yes hsa-let-7e-5p blast ugagguaggagguuguauaguu cuauacggccuccuagcuuucc ugagguaggagguuguauaguugaggaggacacccaaggagaucacuauacggccuccuagcuuucc chr19:51692792..51692859:+
chr12_2212 2.5 0.68 ± 0.33 TRUE 22 22 0 0 yes hsa-miR-196a-5p blast uagguaguuucauguuguuggg cggcaacaagaaacugccugag uagguaguuucauguuguugggauugaguuuugaacucggcaacaagaaacugccugag chr12:53991761..53991820:+
chr3_653 2.5 0.68 ± 0.33 TRUE 53044 53044 0 0 yes hsa-let-7g-5p blast ugagguaguaguuuguacagu uguacaggccacugccuugcc ugagguaguaguuuguacaguuugagggucuaugauaccacccgguacaggagauaacuguacaggccacugccuugcc chr3:52268278..52268357:-
chr7_1481 2.4 0.68 ± 0.33 TRUE 434 434 0 0 yes hsa-miR-182-5p blast uuuggcaaugguagaacucaca gugguucuagacuugccaacua uuuggcaaugguagaacucacacuggugagguaacaggauccggugguucuagacuugccaacua chr7:129770405..129770470:-
chr11_2019 2.4 0.68 ± 0.33 STAR 344 344 0 0 yes hsa-miR-130a-5p blast cagugcaauguuaaaagggca cucuuuucacauugugcuacu cucuuuucacauugugcuacugucugcaccugucacuagcagugcaauguuaaaagggca chr11:57641212..57641272:+
chr1_216 2.4 0.68 ± 0.33 STAR 30 30 0 0 yes hsa-miR-101-5p blast uacaguacugugauaacugaag ucaguuaucacagugcugaugcu ucaguuaucacagugcugaugcugucuauucuaaagguacaguacugugauaacugaag chr1:65058440..65058499:-
chr12_2289 2.4 0.68 ± 0.33 TRUE 3869 3869 0 0 yes hsa-miR-26a-5p blast uucaaguaauccaggauaggcu ccuauucuugauuacuuguuuc uucaaguaauccaggauaggcuguuuccaucugugaggccuauucuugauuacuuguuuc chr12:57824619..57824679:-
chr21_3392 2.4 0.68 ± 0.33 TRUE 144 144 0 0 yes hsa-miR-155-5p blast uuaaugcuaaucgugauaggggu uccuacauauuagcauuaaca uuaaugcuaaucgugauagggguuuuugccuccaacugacuccuacauauuagcauuaaca chr21:25573982..25574043:+
chr5_987 2.4 0.68 ± 0.33 STAR 315 315 0 0 yes hsa-miR-143-5p blast ugagaugaagcacuguagcu gugcagugcugcaucucugg gugcagugcugcaucucuggucaguugggagucugagaugaagcacuguagcu chr5:149428944..149428997:+
chr9_1776 2.4 0.68 ± 0.33 TRUE 146 144 0 2 yes hsa-miR-181a-5p blast aacauucaacgcugucggugag accacugaccguugacugu aacauucaacgcugucggugaguuugggauuugaaaaaaccacugaccguugacugu chr9:124692479..124692536:+
chr14_2492 2.4 0.68 ± 0.33 TRUE 19 19 0 0 yes hsa-miR-432-5p blast ucuuggaguaggucauugggugg acuggauggcuccuccaugucu ucuuggaguaggucauuggguggauccucuauuuccuuacgugggccacuggauggcuccuccaugucu chr14:100884495..100884564:+
chrX_3633 2.4 0.68 ± 0.33 TRUE 50947 50947 0 0 yes hsa-let-7f-5p blast ugagguaguagauuguauagu uauacagucuacugucuuucc ugagguaguagauuguauaguuuuagggucauaccccaucuuggagauaacuauacagucuacugucuuucc chrX:53557195..53557267:-
chrX_3677 2.4 0.68 ± 0.33 TRUE 227 227 0 0 yes hsa-miR-505-5p blast gggagccaggaaguauugaugu gucaacacuugcugguuuccuc gggagccaggaaguauugauguuucugccaguuuagcgucaacacuugcugguuuccuc chrX:139924158..139924217:-
chr15_2608 2.3 0.68 ± 0.33 TRUE 146 146 0 0 yes hsa-miR-7-5p blast uggaagacuagugauuuuguugu aacaaaucccagucuaccuaa uggaagacuagugauuuuguuguugucuuacugcgcucaacaacaaaucccagucuaccuaa chr15:88611855..88611917:+
chr9_1821 2.3 0.68 ± 0.33 TRUE 146 146 0 0 yes hsa-miR-7-5p blast uggaagacuagugauuuuguugu aacaaaucacagucugccaua uggaagacuagugauuuuguuguuuuuagauaacuaaaucgacaacaaaucacagucugccaua chr9:83969770..83969834:-
chr17_2948 2.3 0.68 ± 0.33 STAR 2213 2213 0 0 yes hsa-miR-144-5p blast uacaguauagaugaugua uaucaucauauacuguaag uaucaucauauacuguaaguuugcgaugagacacuacaguauagaugaugua chr17:28861549..28861601:-
chr19_3220 2.3 0.68 ± 0.33 STAR 108 108 0 0 yes hsa-miR-24-2-5p blast uggcucaguucagcaggaacagg cgugccuacugagcugaaacacagu cgugccuacugagcugaaacacaguugguuuguguacacuggcucaguucagcaggaacagg chr19:13836287..13836349:-
chr22_3466 2.3 0.68 ± 0.33 TRUE 182139 182139 0 0 yes hsa-let-7a-5p blast ugagguaguagguuguauagu uauacaaucuacugucuuucc ugagguaguagguuguauaguuuggggcucugcccugcuaugggauaacuauacaaucuacugucuuucc chr22:46112751..46112821:+
chr18_3048 2.3 0.68 ± 0.33 TRUE 1399 1399 0 0 yes hsa-miR-122-5p blast uggagugugacaaugguguuu acgccauuaucacacuaaaua uggagugugacaaugguguuugugucuaaacuaucaaacgccauuaucacacuaaaua chr18:58451087..58451145:+
chr17_2904 2.2 0.68 ± 0.33 STAR 168 164 0 4 yes hsa-miR-22-5p blast aagcugccaguugaagaacu aguucuucaguggcaagcu aguucuucaguggcaagcuuuauguccugacccagcuaaagcugccaguugaagaacu chr17:1713915..1713973:-
chr1_300 2.2 0.68 ± 0.33 STAR 3 2 0 1 yes hsa-miR-4742-5p blast ucuguauucuccuuugccugca ucaggcaaagggauauuuacaga ucaggcaaagggauauuuacagauacuuuuuaaaauuuguuugaguugaggcagauuaaauaucuguauucuccuuugccugca chr1:224398227..224398311:-
chr21_3390 2.2 0.68 ± 0.33 TRUE 1547 1547 0 0 yes hsa-let-7c-5p blast ugagguaguagguuguau acaaccuucuagcuuucc ugagguaguagguuguaugguuuagaguuacacccugggaguuaacuguacaaccuucuagcuuucc chr21:16539837..16539904:+
chr19_3214 2.2 0.68 ± 0.33 STAR 16 16 0 0 yes hsa-miR-199a-5p blast acaguagucugcacauuggu caguguucagacuaccuguuc caguguucagacuaccuguucaggaggcucucaauguguacaguagucugcacauuggu chr19:10817430..10817489:-
chr17_2884 2.2 0.68 ± 0.33 TRUE 129 129 0 0 yes hsa-miR-21-5p blast uagcuuaucagacugauguug acaccagucgaugggcuguc uagcuuaucagacugauguugacuguugaaucucauggcaacaccagucgaugggcuguc chr17:59841272..59841332:+
chr9_1748 2.2 0.68 ± 0.33 TRUE 182141 182141 0 0 yes hsa-let-7a-5p blast ugagguaguagguuguauagu uauacaaucuacugucuuucc ugagguaguagguuguauaguuuuagggucacacccaccacugggagauaacuauacaaucuacugucuuucc chr9:94175961..94176034:+
chr1_262 2.2 0.68 ± 0.33 STAR 16 16 0 0 yes hsa-miR-199a-5p blast acaguagucugcacauuggu caguguucagacuaccuguuc caguguucagacuaccuguucaggacaaugccguuguacaguagucugcacauuggu chr1:172144555..172144612:-
chrX_3643 2.1 0.68 ± 0.33 TRUE 46 46 0 0 yes hsa-miR-361-5p blast uuaucagaaucuccaggggua ccccaggugugauucugauuugc uuaucagaaucuccagggguacuuuauaauuucaaaaagucccccaggugugauucugauuugc chrX:85903638..85903702:-
chr7_1485 2.1 0.68 ± 0.33 TRUE 89 81 0 8 yes hsa-miR-183-5p blast uauggcacugguagaauuca ugaauuaccgaagggccaua uauggcacugguagaauucacugugaacagucucagucagugaauuaccgaagggccaua chr7:129774928..129774988:-
chr7_1388 2.1 0.68 ± 0.33 TRUE 177 177 0 0 yes hsa-miR-335-5p blast ucaagagcaauaacgaaaaaug uuuuucauuauugcuccugacc ucaagagcaauaacgaaaaauguuugucauaaaccguuuuucauuauugcuccugacc chr7:130496125..130496183:+
chr1_221 2.1 0.68 ± 0.33 TRUE 30 30 0 0 yes hsa-miR-186-5p blast caaagaauucuccuuuugggcu cccaaaggugaauuuuuuggg caaagaauucuccuuuugggcuuucugguuuuauuuuaagcccaaaggugaauuuuuuggg chr1:71067641..71067702:-
chr1_282 2.0 0.68 ± 0.33 STAR 57 57 0 0 yes hsa-miR-29c-5p blast uagcaccauuugaaaucggu cgauuucuccugguguucaga cgauuucuccugguguucagagucuguuuuugucuagcaccauuugaaaucggu chr1:207801866..207801920:-
chr7_1490 2.0 0.68 ± 0.33 STAR 36 36 0 0 yes hsa-miR-29b-1-5p blast uagcaccauuugaaaucagug cugguuucauauggugguuuaga cugguuucauauggugguuuagauuuaaauagugauugucuagcaccauuugaaaucagug chr7:130877468..130877529:-
chrX_3663 2.0 0.68 ± 0.33 TRUE 245 245 0 0 yes hsa-miR-20b-5p blast caaagugcucauagugcaggua acuguaguaugggcacuuccag caaagugcucauagugcagguaguuuuggcaugacucuacuguaguaugggcacuuccag chrX:134169812..134169872:-
chr17_2834 2.0 0.68 ± 0.33 TRUE 57 57 0 0 yes hsa-miR-744-5p blast ugcggggcuagggcuaacagca cuguugccacuaaccucaacc ugcggggcuagggcuaacagcagucuuacugaagguuuccuggaaaccacgcacaugcuguugccacuaaccucaacc chr17:12081908..12081986:+
chr17_2989 2.0 0.68 ± 0.33 TRUE 16 16 0 0 yes hsa-miR-196a-5p blast uagguaguuucauguuguuggg caacaacauuaaaccacccgau uagguaguuucauguuguugggccuggguuucugaacacaacaacauuaaaccacccgau chr17:48632493..48632553:-
chr1_298 2.0 0.68 ± 0.33 TRUE 229 229 0 0 yes hsa-miR-320b blast aaaagcuggguugagagggc uuucucuucccagauuucc uuucucuucccagauuucccaaaguugggaaaagcuggguugagagggc chr1:224257050..224257099:-
chr9_1846 2.0 0.68 ± 0.33 STAR 17 16 0 1 yes hsa-miR-199b-5p blast acaguagucugcacauuggu cccaguguuuagacuaucuguuc cccaguguuuagacuaucuguucaggacucccaaauuguacaguagucugcacauuggu chr9:128244746..128244805:-
chr9_1757 2.0 0.68 ± 0.33 STAR 109 109 0 0 yes hsa-miR-24-1-5p blast uggcucaguucagcaggaacagg ggugccuacugagcugauaucagu ggugccuacugagcugauaucaguucucauuuuacacacuggcucaguucagcaggaacagg chr9:95086024..95086086:+
chr17_3004 1.9 0.19 ± 0.24 STAR 35 35 0 0 yes hsa-miR-454-5p blast uagugcaauauugcuuauagggu ccuaucaauauugucucugc ccuaucaauauugucucugcuguguaaauaguucugaguagugcaauauugcuuauagggu chr17:59137786..59137847:-
chr19_3114 1.9 0.19 ± 0.24 TRUE 146 146 0 0 yes hsa-miR-7-5p blast uggaagacuagugauuuuguugu aacaagucacagccggccuca uggaagacuagugauuuuguuguucugauguacuacgacaacaagucacagccggccuca chr19:4770699..4770759:+
chr1_201 1.9 0.19 ± 0.24 TRUE 23 23 0 0 yes hsa-miR-6734-5p blast uugaggggagaaugagguggaga uucccucacucuucucucaggu uugaggggagaaugagguggagaagcccagguucugaauccccuucccucacucuucucucaggu chr1:43364645..43364710:-
chrX_3638 1.9 0.19 ± 0.24 TRUE 59 59 0 0 yes hsa-miR-421 blast aucaacagacauuaauugggcg cucauuaaauguuuguugaauga cucauuaaauguuuguugaaugaaaaaaugaaucaucaacagacauuaauugggcg chrX:74218392..74218448:-
chr15_2650 1.9 0.19 ± 0.24 STAR 75 75 0 0 yes hsa-miR-628-5p blast ucuaguaagaguggcagucgaag caugcugacauauuuacuagagg caugcugacauauuuacuagaggguaaaauuaauaaccuucuaguaagaguggcagucgaag chr15:55372951..55373013:-
chr7_1488 1.9 0.19 ± 0.24 STAR 47 47 0 0 yes hsa-miR-29a-5p blast uagcaccaucugaaaucgguu cugauuucuuuugguguucaga cugauuucuuuugguguucagagucaauauaauuuucuagcaccaucugaaaucgguu chr7:130876748..130876806:-
chr13_2411 1.9 0.19 ± 0.24 TRUE 149419 149419 0 0 yes hsa-miR-16-5p blast uagcagcacguaaauauuggcg ccaguauuaacugugcugcugaa uagcagcacguaaauauuggcguuaagauucuaaaauuaucuccaguauuaacugugcugcugaa chr13:50048983..50049048:-
chr11_2177 1.9 0.19 ± 0.24 TRUE 182188 182188 0 0 yes hsa-let-7a-5p blast ugagguaguagguuguauagu uguacagccuccuagcuuucc ugagguaguagguuguauaguuuagaauuacaucaagggagauaacuguacagccuccuagcuuucc chr11:122146522..122146589:-
chr14_2500 1.9 0.19 ± 0.24 TRUE 26 26 0 0 yes hsa-miR-382-5p blast gaaguuguucgugguggauucg aaucauucacggacaacacuuuu gaaguuguucgugguggauucgcuuuacuuaugacgaaucauucacggacaacacuuuu chr14:101054315..101054374:+
chr11_2086 1.8 0.19 ± 0.24 STAR 10 10 0 0 yes hsa-miR-210-5p blast cugugcgugugacagcggcu ccccugcccaccgcacacug ccccugcccaccgcacacugcgcugccccagacccacugugcgugugacagcggcu chr11:568113..568169:-
chrX_3660 1.8 0.19 ± 0.24 STAR 326 326 0 0 yes hsa-miR-92a-2-5p blast uauugcacuugucccggccugu ggguggggauuuguugcauuacu ggguggggauuuguugcauuacuuguguucuauauaaaguauugcacuugucccggccugu chrX:134169543..134169604:-
chr17_2868 1.8 0.19 ± 0.24 TRUE 68 67 0 1 yes hsa-miR-5010-5p blast agggggauggcagagcaaaa uuuugugucucccauuccccag agggggauggcagagcaaaauucauggccuacagcugccucuugccaaacugcacuggauuuugugucucccauuccccag chr17:42514207..42514288:+
chr16_2710 1.8 0.19 ± 0.24 TRUE 18 18 0 0 yes hsa-miR-484 blast ucaggcucaguccccucccga ggggggugacccuggcu ucaggcucaguccccucccgauaaaccccuaaauagggacuuucccggggggugacccuggcu chr16:15643300..15643363:+
chr17_2990 1.7 0.19 ± 0.24 TRUE 16 16 0 0 yes hsa-miR-196a-5p blast uagguaguuucauguuguuggg ugaauuggaacugcugagu ugaauuggaacugcugagugaauuagguaguuucauguuguuggg chr17:48632531..48632576:-
chr5_1096 1.7 0.19 ± 0.24 STAR 2045 2045 0 0 yes hsa-miR-103a-1-5p blast agcagcauuguacagggcu cuucuuuacagugcugccuug cuucuuuacagugcugccuuguugcauauggaucaagcagcauuguacagggcu chr5:168560907..168560961:-
chr7_1431 1.7 0.19 ± 0.24 TRUE 22 22 0 0 yes hsa-miR-196b-5p blast uagguaguuuccuguuguug acagcacgacacugccuuca uagguaguuuccuguuguugggauccaccuuucucucgacagcacgacacugccuuca chr7:27169491..27169549:-
chr18_3029 1.7 0.19 ± 0.24 TRUE 83 83 0 0 yes hsa-miR-320c blast aaaagcuggguugagagg ucucuuuccaguucuucc ucucuuuccaguucuucccagaauugggaaaagcuggguugagagg chr18:24321687..24321733:+
chr1_284 1.7 0.19 ± 0.24 STAR 36 36 0 0 yes hsa-miR-29b-2-5p blast uagcaccauuugaaaucagug cugguuucacaugguggcuuaga cugguuucacaugguggcuuagauuuuuccaucuuuguaucuagcaccauuugaaaucagug chr1:207802451..207802513:-
chr18_3027 1.7 0.19 ± 0.24 TRUE 75 75 0 0 yes hsa-miR-320c blast aaaagcuggguugagagg ucucuucccaguucuucc ucucuucccaguucuucccagagucaggaaaagcuggguugagagg chr18:21683530..21683576:+
chrX_3658 1.7 0.19 ± 0.24 STAR 20 20 0 0 yes hsa-miR-363-5p blast aauugcacgguauccaucugua cggguggaucacgaugcaauuuu cggguggaucacgaugcaauuuugaugaguaucauaggagaaaaauugcacgguauccaucugua chrX:134169381..134169446:-
chrX_3550 1.6 0.19 ± 0.24 TRUE 84 84 0 0 yes hsa-miR-660-5p blast uacccauugcauaucggaguug ccuccugugugcauggauuac uacccauugcauaucggaguugugaauucucaaaacaccuccugugugcauggauuac chrX:50013255..50013313:+
chr20_3253 1.6 0.19 ± 0.24 STAR 2045 2045 0 0 yes hsa-miR-103a-2-5p blast agcagcauuguacagggcu cuucuuuacagugcugccuug cuucuuuacagugcugccuuguagcauucaggucaagcagcauuguacagggcu chr20:3917505..3917559:+
chr9_1778 1.6 0.19 ± 0.24 TRUE 12 12 0 0 yes hsa-miR-181b-5p blast acauucauugcugucggugggu ucacugaucaaugaaugcaa acauucauugcugucgguggguuugagucugaaucaacucacugaucaaugaaugcaa chr9:124693725..124693783:+
chr10_1950 1.6 0.19 ± 0.24 TRUE 1169 1169 0 0 yes hsa-miR-107 blast agcagcauuguacagggcu cuucuuuacaguguugccuug cuucuuuacaguguugccuuguggcauggaguucaagcagcauuguacagggcu chr10:89592759..89592813:-
chr17_2987 1.5 0.19 ± 0.24 TRUE 31 31 0 0 yes hsa-miR-10a-5p blast uacccuguagauccgaauuugu aaauucguaucuaggggaaua uacccuguagauccgaauuuguguaaggaauuuuguggucacaaauucguaucuaggggaaua chr17:48579863..48579926:-
chr9_1697 1.5 0.19 ± 0.24 STAR 30 30 0 0 yes hsa-miR-101-2-5p blast uacaguacugugauaacugaag ucgguuaucaugguaccgaugcu ucgguuaucaugguaccgaugcuguauaucugaaagguacaguacugugauaacugaag chr9:4850307..4850366:+
chr1_273 1.5 0.19 ± 0.24 TRUE 12 12 0 0 yes hsa-miR-181b-5p blast acauucauugcugucggugggu ucacugaacaaugaaugcaa acauucauugcugucgguggguugaacuguguggacaagcucacugaacaaugaaugcaa chr1:198858886..198858946:-
chr22_3450 1.2 0.19 ± 0.24 TRUE 10 10 0 0 yes hsa-miR-3200-5p blast aaucugagaaggcgcacaagguu ccuugcgcuacucaggucug aaucugagaaggcgcacaagguuuguguccaauacaguccacaccuugcgcuacucaggucug chr22:30731568..30731631:+
chr1_275 1.2 0.19 ± 0.24 TRUE 144 144 0 0 yes hsa-miR-181a-5p blast aacauucaacgcugucggugag caucgaccguugauuguacc aacauucaacgcugucggugaguuuggaauuaaaaucaaaaccaucgaccguugauuguacc chr1:198859068..198859130:-
chr13_2413 1.1 0.19 ± 0.24 TRUE 331 331 0 0 yes hsa-miR-15a-5p blast uagcagcacauaaugguuugu aggccauauugugcugccuca uagcagcacauaaugguuuguggauuuugaaaaggugcaggccauauugugcugccuca chr13:50049129..50049188:-
chrX_3524 1.1 0.19 ± 0.24 TRUE 10 10 0 0 yes hsa-miR-651-5p blast uuuaggauaagcuugacuuu aggaaaguguauccuaaaag uuuaggauaagcuugacuuuuguucaaauaaaaaugcaaaaggaaaguguauccuaaaag chrX:8126979..8127039:+
chr6_1171 1.0 0.19 ± 0.24 TRUE 9 9 0 0 yes hsa-miR-206 blast uggaauguaaggaagugugugg acaugcuucuuuauauccccaua acaugcuucuuuauauccccauauggauuacuuugcuauggaauguaaggaagugugugg chr6:52144362..52144422:+
chr10_1959 0.9 0.00 ± 0.00 TRUE 8 8 0 0 yes hsa-miR-3157-5p blast uucagccaggcuagugcaguc cugcccuagucuagcugaagc uucagccaggcuagugcagucugcuuugugccaacacuggggugaugacugcccuagucuagcugaagc chr10:96064321..96064390:-
chr12_2193 0.9 0.00 ± 0.00 STAR 8 8 0 0 yes hsa-miR-200c-5p blast uaauacugccggguaaugaugg gucuuacccagcaguguuugg gucuuacccagcaguguuugggugcgguugggagucucuaauacugccggguaaugaugg chr12:6963703..6963763:+
chr1_79 0.9 0.00 ± 0.00 TRUE 228 228 0 0 yes hsa-miR-320b blast aaaagcuggguugagagggc ccucucuuucuaguucuucc ccucucuuucuaguucuuccuagagugaggaaaagcuggguugagagggc chr1:116671756..116671806:+
chr11_2091 0.7 0.00 ± 0.00 TRUE 8 8 0 0 yes hsa-miR-483-5p blast aagacgggaggaaagaaggga acuccucuccucccgucuucu aagacgggaggaaagaagggagugguuccaucacgccuccucacuccucuccucccgucuucu chr11:2134139..2134202:-
chr11_2141 0.7 0.00 ± 0.00 TRUE 8 8 0 0 yes hsa-miR-194-5p blast uguaacagcaacuccaugugg aguggggcugcuguuaucug uguaacagcaacuccauguggaagugcccacugguuccaguggggcugcuguuaucug chr11:64891367..64891425:-
chr3_602 0.6 0.00 ± 0.00 TRUE 670 670 0 0 yes hsa-miR-15b-5p blast uagcagcacaucaugguu ucauuauuugcugcucua uagcagcacaucaugguuuacaugcuacagucaagaugcgaaucauuauuugcugcucua chr3:160404606..160404666:+
chr1_293 0.5 0.00 ± 0.00 TRUE 21 21 0 0 yes hsa-miR-664a-5p blast acuggcuagggaaaaugauugg auuuauccccagccuacaa acuggcuagggaaaaugauuggauagaaacuauuauucuauucauuuauccccagccuacaa chr1:220200547..220200609:-
chr13_2380 0.4 0.00 ± 0.00 TRUE 61 60 0 1 yes hsa-miR-18a-5p blast uaaggugcaucuagugcaga acugcccuaagugcuccu uaaggugcaucuagugcagauagugaaguagauuagcaucuacugcccuaagugcuccu chr13:91350755..91350814:+
chrX_3620 0.3 0.00 ± 0.00 STAR 8 8 0 0 yes hsa-miR-221-5p blast agcuacauugucugcuggguu ccuggcauacaauguagauuucugu ccuggcauacaauguagauuucuguguucguuaggcaacagcuacauugucugcuggguu chrX:45746181..45746241:-
chr15_2629 0.2 0.00 ± 0.00 TRUE 7 7 0 0 yes hsa-miR-627-5p blast ugagucucuaagaaaagaggag ccucuuuucuuugagacucacu ugagucucuaagaaaagaggaggugguuguuuuccuccucuuuucuuugagacucacu chr15:42199592..42199650:-
chr7_1355 0.2 0.00 ± 0.00 STAR 9 9 0 0 yes hsa-miR-590-5p blast uaauuuuauguauaagcuagu gagcuuauucauaaaagugca gagcuuauucauaaaagugcaguauggugaagucaaucuguaauuuuauguauaagcuagu chr7:74191212..74191273:+
chr19_3190 0 0.00 ± 0.00 TRUE 7 5 0 2 yes hsa-miR-125a-5p blast ucccugagacccuuuaaccugu acaggugagguucuugggagcc ucccugagacccuuuaaccugugaggacauccagggucacaggugagguucuugggagcc chr19:51693267..51693327:+
chrX_3683 0 0.00 ± 0.00 TRUE 7 7 0 0 yes hsa-miR-224-5p blast caagucacuagugguuccguuuag aaauggugcccuagugacuacaa caagucacuagugguuccguuuaguagaugauugugcauuguuucaaaauggugcccuagugacuacaa chrX:151958582..151958651:-
chr7_1433 0 0.00 ± 0.00 TRUE 7 6 0 1 yes hsa-miR-550a-3-5p blast ugccugagggaguaagagu ugucuuacucccucaggcaca ugccugagggaguaagaguccuguuguuguaagauagugucuuacucccucaggcaca chr7:29680748..29680806:-
chr1_291 0 0.00 ± 0.00 TRUE 8 8 0 0 yes hsa-miR-194-5p blast uguaacagcaacuccaugugg aguggagaugcuguuacuuu uguaacagcaacuccauguggacuguguaccaauuuccaguggagaugcuguuacuuu chr1:220118169..220118227:-
chrX_3665 -0.1 0.00 ± 0.00 TRUE 11 11 0 0 yes hsa-miR-18b-5p blast uaaggugcaucuagugcag gcccuaaaugccccuucuggc uaaggugcaucuagugcaguuagugaagcagcuuagaaucuacugcccuaaaugccccuucuggc chrX:134170041..134170106:-
chr11_2165 -0.1 0.00 ± 0.00 TRUE 5 4 0 1 yes hsa-miR-1304-5p blast cgguuugaggcuacagugaga ucucacuguagccucgaacc cgguuugaggcuacagugagaugugauccugccacaucucacuguagccucgaacc chr11:93733692..93733748:-
chr8_1610 -0.2 0.00 ± 0.00 NA 7 7 0 0 yes hsa-miR-1322 blast uacgucaucguugucaucguc cggugaucccgauggugugag cggugaucccgauggugugagcuggaaauggggugcuacgucaucguugucaucguc chr8:11035221..11035278:-
chr2_373 -0.3 0.00 ± 0.00 STAR 7 7 0 0 yes hsa-miR-128-1-5p blast ucacagugaaccggucucu gggccguagcacugucugaga gggccguagcacugucugagagguuuacauuucucacagugaaccggucucu chr2:135665412..135665464:+
chr11_2179 -0.3 0.00 ± 0.00 TRUE 8 8 0 0 yes hsa-miR-100-5p blast aacccguagauccgaacuugug caagcuuguaucuauagguaug aacccguagauccgaacuugugguauuaguccgcacaagcuuguaucuauagguaug chr11:122152239..122152296:-
chr5_1103 -0.6 0.00 ± 0.00 TRUE 7 7 0 0 yes hsa-miR-340-5p blast uuauaaagcaaugagacugau ccgucucaguuacuuuauagcc uuauaaagcaaugagacugauugucauaugucguuugugggauccgucucaguuacuuuauagcc chr5:180015317..180015382:-
chr17_2940 -0.9 0.00 ± 0.00 STAR 97 97 0 0 no hsa-miR-1180-5p blast uuuccggcucgcgugggugug gacccacccggccgggaaua gacccacccggccgggaauagugcuccugguuguuuccggcucgcgugggugug chr17:19344513..19344567:-
chr7_1483 -0.9 0.00 ± 0.00 TRUE 5 5 0 0 yes hsa-miR-96-5p blast uuuggcacuagcacauuuuugcu caaucaugugcagugccaauau uuuggcacuagcacauuuuugcuugugucucuccgcucugagcaaucaugugcagugccaauau chr7:129774697..129774761:-
chr9_1755 -0.9 0.00 ± 0.00 STAR 5 5 0 0 yes hsa-miR-27b-5p blast uucacaguggcuaaguucu agcuuagcugauuggugaaca agcuuagcugauuggugaacagugauugguuuccgcuuuguucacaguggcuaaguucu chr9:95085464..95085523:+
chr2_400 -1.0 0.00 ± 0.00 TRUE 6 6 0 0 yes hsa-miR-10b-5p blast uacccuguagaaccgaauuugu agauucgauucuaggggaaua uacccuguagaaccgaauuugugugguauccguauagucacagauucgauucuaggggaaua chr2:176150328..176150390:+
chr7_1410 -1.0 0.00 ± 0.00 STAR 44 44 0 0 no hsa-miR-339-5p blast ugagcgccucgacgacagagc ccuguccuccaggagcucacg ccuguccuccaggagcucacgugugccugccugugagcgccucgacgacagagc chr7:1022956..1023010:-
chr11_2129 -1.0 0.00 ± 0.00 TRUE 47 47 0 0 no hsa-miR-1908-5p blast cggcggggacggcgauuggu cggccgccggcuccgccccg cggcggggacggcgauugguccguauguguggugccaccggccgccggcuccgccccg chr11:61815171..61815229:-
chr2_520 -1.2 0.00 ± 0.00 STAR 77 77 0 0 no hsa-miR-375-5p blast uuuguucguucggcucgcgug cgacgagccccucgcacaaacc cgacgagccccucgcacaaaccggaccugagcguuuuguucguucggcucgcgug chr2:219001648..219001703:-
chrX_3673 -1.2 0.00 ± 0.00 TRUE 4 4 0 0 yes hsa-miR-503-5p blast uagcagcgggaacaguucugc gguauuguuuccgcugccagg uagcagcgggaacaguucugcagugagcgaucggugcucugggguauuguuuccgcugccagg chrX:134546330..134546393:-
chr9_1716 -1.3 0.00 ± 0.00 TRUE 4 4 0 0 yes hsa-miR-491-5p blast uggggaacccuuccaugaggagu uccuuaugcaagauucccuucu uggggaacccuuccaugaggaguagaacacuccuuaugcaagauucccuucu chr9:20716121..20716173:+
chr22_3441 -1.4 0.00 ± 0.00 STAR 216 216 0 0 no hsa-miR-130b-5p blast cagugcaaugaugaaagggca cucuuucccuguugcacuacu cucuuucccuguugcacuacuauaggccgcugggaagcagugcaaugaugaaagggca chr22:21653316..21653374:+
chr19_3210 -1.5 0.00 ± 0.00 STAR 4 4 0 0 yes hsa-miR-3940-5p blast cagcccggaucccagcccacu uggguuggggcgggcucug uggguuggggcgggcucuggggauuuggucucacagcccggaucccagcccacu chr19:6416434..6416488:-
chr19_3219 -1.5 0.00 ± 0.00 TRUE 108 108 0 0 no hsa-miR-24-3p blast uggcucaguucagcaggaacagg ugccuucccugggugggcugaugcuugg uggcucaguucagcaggaacaggggucaagcccccuuggagccugcagccccugccuucccugggugggcugaugcuugg chr19:13836230..13836310:-
chr7_1404 -1.5 0.00 ± 0.00 TRUE 3 3 0 0 yes hsa-miR-671-5p blast aggaagcccuggaggggcuggagg uccgguucucagggcuccacc aggaagcccuggaggggcuggaggugauggauguuuuccuccgguucucagggcuccacc chr7:151238448..151238508:+
chr6_1148 -1.5 0.00 ± 0.00 TRUE 68 68 0 0 no hsa-miR-877-5p blast guagaggagauggcgcaggg cuucucccuccuccca guagaggagauggcgcaggggacacgggcaaagacuuggggguuccugggacccucagacguguguccucuucucccuccuccca chr6:30584331..30584416:+
chr10_1975 -1.5 0.00 ± 0.00 TRUE 55 55 0 0 no hsa-miR-2110 blast uuggggaaacggccgcugagu ucaccgcggucuuuuccucccac uuggggaaacggccgcugagugaggcgucggcuguguuucucaccgcggucuuuuccucccac chr10:114174109..114174172:-
chr10_1970 -1.6 0.00 ± 0.00 STAR 35 35 0 0 no hsa-miR-1307-5p blast acucggcguggcgucggucguggu cucgaccggaccucgaccggcucg cucgaccggaccucgaccggcucgucuguguugccaaucgacucggcguggcgucggucguggu chr10:103394298..103394362:-
chr20_3252 -1.6 0.00 ± 0.00 TRUE 11 11 0 0 no hsa-miR-1292-5p blast ugggaacggguuccggcagacg gccccggcucccguuccagg ugggaacggguuccggcagacgcugagguugcguugacgcucgcgccccggcucccguuccagg chr20:2652778..2652842:+
chr11_2137 -1.6 0.00 ± 0.00 NA 2 2 0 0 yes hsa-miR-7155-5p blast uuguggucuggggucuugggc ccaagaccucagaccacaacc uuguggucuggggucuugggccaucugguugugacaucacugauggcccaagaccucagaccacaacc chr11:64341842..64341910:-
chr8_1630 -1.6 0.00 ± 0.00 TRUE 21363 21363 0 0 no hsa-miR-486-5p blast uccuguacugagcugccccgag cagcggccggcucugauc cagcggccggcucugaucuccauccucccuggggcauccuguacugagcugccccgag chr8:41660483..41660541:-
chr10_1961 -1.6 0.00 ± 0.00 STAR 2 2 0 0 yes hsa-miR-607 blast auagaucuggauuggaaccca gguucaaauccagaucuauaa auagaucuggauuggaacccagggagccagacugccuggguucaaauccagaucuauaa chr10:96828684..96828743:-
chrX_3662 -1.7 0.00 ± 0.00 STAR 4 4 0 0 yes hsa-miR-19b-2-5p blast ugugcaaauccaugcaaaacuga aguuuugcagguuugcauuuc aguuuugcagguuugcauuucagcguauauauguauauguggcugugcaaauccaugcaaaacuga chrX:134169682..134169748:-
chr11_2147 -1.7 0.00 ± 0.00 TRUE 3 3 0 0 yes hsa-miR-3163 blast uauaaaaugagggcaguaagac cuuacuacccccauuuuauaga uauaaaaugagggcaguaagaccuuccuuccuugucuuacuacccccauuuuauaga chr11:66934440..66934497:-
chr1_175 -1.7 0.00 ± 0.00 TRUE 4 4 0 0 yes hsa-miR-34a-5p blast uggcagugucuuagcugguug aucagcaaguauacugcccua uggcagugucuuagcugguuguugugagcaauaguaaggaagcaaucagcaaguauacugcccua chr1:9151691..9151756:-
chrX_3560 -1.7 0.00 ± 0.00 TRUE 136 136 0 0 no hsa-miR-223-3p blast ugucaguuugucaaauacccca ggauaugacgaauggacugc ugucaguuugucaaauaccccaagugcggcacaugcuuaccagcucuaggccagggcagaugggauaugacgaauggacugc chrX:66018936..66019018:+
chr3_645 -1.7 0.00 ± 0.00 TRUE 97 72 0 25 no hsa-miR-425-5p blast aaugacacgaucacucccguug caucgggaaugucguguccg aaugacacgaucacucccguugagugggcacccgagaagccaucgggaaugucguguccg chr3:49020161..49020221:-
chr22_3465 -1.7 0.00 ± 0.00 TRUE 182139 182139 0 0 no hsa-let-7a-5p blast ugagguaguagguuguauagu accaagaccgacugcccuuu accaagaccgacugcccuuuggggugagguaguagguuguauagu chr22:46112727..46112772:+
chr14_2490 -1.8 0.00 ± 0.00 TRUE 3 3 0 0 yes hsa-miR-345-5p blast gcugacuccuaguccagggcu cccugaacgaggggucuggag gcugacuccuaguccagggcucgugauggcuggugggcccugaacgaggggucuggag chr14:100307875..100307933:+
chr6_1278 -1.8 0.00 ± 0.00 STAR 5 2 0 3 yes hsa-miR-30c-5p blast cugggagaaggcuguuuacu uguaaacauccuacacucucagcu uguaaacauccuacacucucagcuguggaaaguaagaaagcugggagaaggcuguuuacu chr6:71376965..71377025:-
chr5_994 -1.8 0.00 ± 0.00 TRUE 4 4 0 0 yes hsa-miR-146a-5p blast ugagaacugaauuccauggguugu gaccucugaaauucaguucuucag ugagaacugaauuccauggguugugucagugucagaccucugaaauucaguucuucag chr5:160485371..160485429:+
chr3_579 -1.8 0.00 ± 0.00 STAR 4 4 0 0 yes hsa-miR-4446-5p blast cagggcuggcagugacaugggu ccauuucccugccauucccuuggc ccauuucccugccauucccuuggcuucaauuuacucccagggcuggcagugacaugggu chr3:113594880..113594939:+
chr19_3222 -1.9 0.00 ± 0.00 STAR 3 3 0 0 yes hsa-miR-27a-5p blast uucacaguggcuaaguucc ggcuuagcugcuugugagca ggcuuagcugcuugugagcaggguccacaccaagucguguucacaguggcuaaguucc chr19:13836448..13836506:-
chr16_2778 -1.9 0.00 ± 0.00 TRUE 2 2 0 0 yes hsa-miR-3179 blast uagaaggggugaaauuuaaacg uuuaaauuacacuccuucugcu uuuaaauuacacuccuucugcugugccuuacagcaguagaaggggugaaauuuaaacg chr16:18494504..18494562:-
chr19_3187 -1.9 0.00 ± 0.00 TRUE 377 377 0 0 no hsa-let-7e-5p blast ugagguaggagguuguauaguu cuguccaccugccgcgcc cuguccaccugccgcgccccccgggcugagguaggagguuguauaguu chr19:51692766..51692814:+
chr14_2501 -1.9 0.00 ± 0.00 STAR 4 4 0 0 yes hsa-miR-409-5p blast gaauguugcucggugaaccccu agguuacccgagcaacuuugc agguuacccgagcaacuuugcaucuggacgacgaauguugcucggugaaccccu chr14:101065313..101065367:+
chr11_2139 -1.9 0.00 ± 0.00 TRUE 4 4 0 0 yes hsa-miR-192-5p blast cugaccuaugaauugacagcc cugccaauuccauaggucacag cugaccuaugaauugacagccagugcucucgucuccccucuggcugccaauuccauaggucacag chr11:64891158..64891223:-
chr16_2707 -1.9 0.00 ± 0.00 TRUE 2 2 0 0 yes hsa-miR-3179 blast agaaggggugaaauuuaaacgu guuuaaauuacacuccuucugc guuuaaauuacacuccuucugcugugccuuacagcaguagaaggggugaaauuuaaacgu chr16:14901520..14901580:+
chr16_2776 -1.9 0.00 ± 0.00 TRUE 2 2 0 0 yes hsa-miR-3179 blast uagaaggggugaaauuuaaacg uuuaaauuacacuccuucugcu uuuaaauuacacuccuucugcugugccuuacagcaguagaaggggugaaauuuaaacg chr16:18411905..18411963:-
chr16_2711 -1.9 0.00 ± 0.00 TRUE 2 2 0 0 yes hsa-miR-3179 blast uagaaggggugaaauuuaaacg uuuaaauuacacuccuucugcu uuuaaauuacacuccuucugcugugccuuacagcaguagaaggggugaaauuuaaacg chr16:16300172..16300230:+
chr14_2504 -2.0 0.00 ± 0.00 TRUE 4 4 0 0 yes hsa-miR-369-5p blast agaucgaccguguuauauucg aauaauacaugguugaucuuu agaucgaccguguuauauucgcuuuauugacuucgaauaauacaugguugaucuuu chr14:101065605..101065661:+
chr6_1263 -2.0 0.00 ± 0.00 TRUE 3 3 0 0 yes hsa-miR-4646-5p blast ugggaagaggagcugagggac cccucucccuucccagg ugggaagaggagcugagggacauugcggagagggucucacauugucccucucccuucccagg chr6:31701027..31701089:-
chr4_801 -2.1 0.15 ± 0.09 STAR 2 2 0 0 yes hsa-miR-3688-5p blast uauggaaagacuuugccacucu aguggcaaagucuuuccauaug aguggcaaagucuuuccauauguguaacagacauacauacauacauauggaaagacuuugccacucu chr4:159128815..159128882:+
chr20_3260 -2.1 0.15 ± 0.09 TRUE 4 4 0 0 yes hsa-miR-3192-5p blast ucugggagguuguagcaguggaaa uccucugaucgcccucucagcuc ucugggagguuguagcaguggaaaaaguucuuuucuuccucugaucgcccucucagcuc chr20:18470623..18470682:+
chrX_3653 -2.1 0.15 ± 0.09 TRUE 3 3 0 0 yes hsa-miR-766-5p blast aggaggaauuggugcuggu cagccccacagccucagcc aggaggaauuggugcuggucuuucauuuuggauuugacuccagccccacagccucagcc chrX:119646761..119646820:-
chr11_2111 -2.1 0.15 ± 0.09 TRUE 2 2 0 0 yes hsa-miR-610 blast ugugagcuaaaugugugcuggga ccagcacacauuuagcucaccua ugugagcuaaaugugugcugggacauuuggcucaaaugugucccagcacacauuuagcucaccua chr11:28056825..28056890:-
chr9_1799 -2.1 0.15 ± 0.09 TRUE 3 3 0 0 yes hsa-miR-31-5p blast aggcaagaugcuggcauagcuguu ccugcuaugccaacauauugccauc aggcaagaugcuggcauagcuguugaacugggaaccugcuaugccaacauauugccauc chr9:21512119..21512178:-
chr10_1996 -2.1 0.15 ± 0.09 STAR 2 2 0 0 yes hsa-miR-202-5p blast aagagguauagggcauggga cuaugcauauacuucuuug cuaugcauauacuucuuugaggaucuggccuaaagagguauagggcauggga chr10:133247538..133247590:-
chr12_2224 -2.2 0.15 ± 0.09 TRUE 6 6 0 0 yes hsa-miR-10527-5p blast aaagcaaauguugggugaacggc caugcaccuuacucuugcuggua aaagcaaauguugggugaacggcuguuuccucuuauucaagccaugcaccuuacucuugcuggua chr12:63823662..63823727:+
chr4_894 -2.2 0.15 ± 0.09 STAR 2 2 0 0 yes hsa-miR-3688-5p blast uauggaaagacuuugccacucu aguggcaaagucuuuccauaug aguggcaaagucuuuccauauguauguauguaugucuguuacacauauggaaagacuuugccacucu chr4:159128813..159128880:-
chr17_2911 -2.2 0.15 ± 0.09 TRUE 2 2 0 0 yes hsa-miR-497-5p blast cagcagcacacugugguuugua caaaccacacugugguguuagagcgag cagcagcacacugugguuuguacggcacuguggccacguccaaaccacacugugguguuagagcgag chr17:7017932..7017999:-
chr16_2706 -2.2 0.15 ± 0.09 TRUE 3 3 0 0 yes hsa-miR-193b-5p blast cgggguuuugagggcgagau cuggcccucaaagucccgcu cgggguuuugagggcgagaugaguuuauguuuuauccaacuggcccucaaagucccgcu chr16:14303979..14304038:+
chr1_18 -2.2 0.15 ± 0.09 STAR 4 4 0 0 yes hsa-miR-3675-3p blast augggggcuucuguagagauu ucucuaaggaacucccccaaac augggggcuucuguagagauuucuaugagaacaucucuaaggaacucccccaaac chr1:16681266..16681321:+
chr7_1417 -2.3 0.15 ± 0.09 TRUE 3 3 0 0 yes hsa-miR-589-5p blast ugagaaccacgucugcucug gaacaaaugccgguucccaga ugagaaccacgucugcucugagcuggguacugccuguucagaacaaaugccgguucccaga chr7:5495833..5495894:-
chr21_3403 -2.3 0.15 ± 0.09 TRUE 11 11 0 0 no hsa-miR-6815-5p blast uagguggcgccggaggaguca gcgucugccgccucgu gcgucugccgccucguggggacuuggagcguggggugcauuuccauguagacacuguagguggcgccggaggaguca chr21:45478214..45478291:+
chr2_490 -2.3 0.15 ± 0.09 TRUE 1 1 0 0 yes hsa-miR-4773 blast cagaacaggagcauagaaagg uuucuaugcuccuguucugcu uuucuaugcuccuguucugcuuugaugaaauaaagcagaacaggagcauagaaagg chr2:151368343..151368399:-
chr2_383 -2.3 0.15 ± 0.09 TRUE 1 1 0 0 yes hsa-miR-4773 blast cagaacaggagcauagaaagg uuucuaugcuccuguucugcu uuucuaugcuccuguucugcuuuauuucaucaaagcagaacaggagcauagaaagg chr2:151368345..151368401:+
chr12_2213 -2.3 0.15 ± 0.09 STAR 5 5 0 0 yes hsa-miR-148b-5p blast ucagugcaucacagaacuuuguc ugaaguucuguuauacacucaggcu ugaaguucuguuauacacucaggcuguggcucucugaaagucagugcaucacagaacuuuguc chr12:54337237..54337300:+
chr9_1842 -2.3 0.15 ± 0.09 TRUE 1 1 0 0 yes hsa-miR-4672 blast uuacacagcuggacagagg ucuguccagcuguguggcc ucuguccagcuguguggccuuggacaagccucuugguuacacagcuggacagagg chr9:127869426..127869481:-
chr19_3134 -2.3 0.15 ± 0.09 TRUE 3 3 0 0 yes hsa-miR-6515-5p blast uuggaggguguggaagacauc ucucuucaucuaccccccagga uuggaggguguggaagacaucugggccaacucugaucucuucaucuaccccccagga chr19:12940485..12940542:+
chr19_3174 -2.3 0.15 ± 0.09 TRUE 2 2 0 0 yes hsa-miR-769-5p blast ugagaccucuggguucugagcu cugggaucuccggggucuuggu ugagaccucuggguucugagcugugauguugcucucgagcugggaucuccggggucuuggu chr19:46018960..46019021:+
chr1_235 -2.3 0.15 ± 0.09 STAR 4 4 0 0 yes hsa-miR-3675-3p blast augggggcuucuguagagauu ucucuaaggaacucccccaagc augggggcuucuguagagauuucuaugagaacaucucuaaggaacucccccaagc chr1:143541651..143541706:-
chr7_1370 -2.4 0.15 ± 0.09 TRUE 2 2 0 0 yes hsa-miR-4467 blast uggcggcgguaguuaugggcu ccccugggccgccgccucc uggcggcgguaguuaugggcuucucuuucucaccagcagccccugggccgccgccucc chr7:102471471..102471529:+
chrX_3667 -2.4 0.15 ± 0.09 TRUE 3 3 0 0 yes hsa-miR-106a-5p blast aaaagugcuuacagugcagguag acugcaauguaagcacuucuuac aaaagugcuuacagugcagguagcuuuuugagaucuacugcaauguaagcacuucuuac chrX:134170207..134170266:-
chr19_3201 -2.4 0.15 ± 0.09 TRUE 1 1 0 0 yes hsa-miR-7108-5p blast guguggccggcaggcgggugg acccgcccgucuccccacagcu guguggccggcaggcgggugggcgggggcggccggugggaaccccgccccgccccgcgcccgcacucacccgcccgucuccccacagcu chr19:2434911..2435000:-
chr19_3179 -2.4 0.15 ± 0.09 NA 2 2 0 0 yes hsa-miR-6800-5p blast uccucacaccucuccuggcaucg acagucaggggcggggugugguggggc acagucaggggcggggugugguggggcuggggcuggcccccuccucacaccucuccuggcaucg chr19:49832028..49832092:+
chr2_434 -2.4 0.15 ± 0.09 STAR 2 2 0 0 yes hsa-miR-3682-5p blast ugaugauacagguggaggu uucuaccuguguuaucaua uucuaccuguguuaucauaauaaaggugucaugaugauacagguggaggu chr2:53849137..53849187:-
chr19_3171 -2.4 0.15 ± 0.09 STAR 1 1 0 0 yes hsa-miR-642a-5p blast agacacauuuggagagggaac ucccucuccaaaugugucuug ucccucuccaaaugugucuuggggugggggaucaagacacauuuggagagggaac chr19:45674943..45674998:+
chr19_3233 -2.4 0.15 ± 0.09 TRUE 1 1 0 0 yes hsa-miR-641 blast aagacauaggauagagucaccu gugacuguccuaugucuuuc aagacauaggauagagucaccucuguccucuguccucuaccuauagaggugacuguccuaugucuuuc chr19:40282557..40282625:-
chrX_3606 -2.4 0.15 ± 0.09 TRUE 4 4 0 0 yes hsa-miR-664b-5p blast ugggcuaagggagaugauugggua uucauuugccucccagccuaca ugggcuaagggagaugauuggguagaaaguauuauucuauucauuugccucccagccuaca chrX:154768595..154768656:+
chr1_16 -2.4 0.15 ± 0.09 STAR 4 4 0 0 yes hsa-miR-3675-3p blast augggggcuucuguagagauu ucucuaaggaacucccccaaac augggggcuucuguagagauuucuaugagaacaucucuaaggaacucccccaaac chr1:16548925..16548980:+
chrX_3546 -2.5 0.15 ± 0.09 TRUE 2 2 0 0 yes hsa-miR-501-5p blast aauccuuugucccugggugagagu augcacccgggcaaggauucu aauccuuugucccugggugagagugcuuucugaaugcaaugcacccgggcaaggauucu chrX:50009734..50009793:+
chrX_3611 -2.5 0.15 ± 0.09 TRUE 2 2 0 0 yes hsa-miR-548ax blast gaaguaauugcgguuuugcca gcaaaaaccguaauuacuuuug gaaguaauugcgguuuugccauggaaaguaauggcaaaaaccguaauuacuuuug chrX:11318621..11318676:-
chr4_828 -2.5 0.15 ± 0.09 TRUE 1 1 0 0 yes hsa-miR-3138 blast uguggacagugagguagaggga cccccaccucacugcccggg cccccaccucacugcccgggugcccacaagacuguggacagugagguagaggga chr4:10078623..10078677:-
chrX_3544 -2.5 0.15 ± 0.09 TRUE 2 2 0 0 yes hsa-miR-362-5p blast aauccuuggaaccuaggugugagug caacacaccuauucaaggauuca aauccuuggaaccuaggugugagugcuauuucagugcaacacaccuauucaaggauuca chrX:50008967..50009026:+
chr8_1691 -2.5 0.15 ± 0.09 TRUE 1 1 0 0 yes hsa-miR-939-5p blast uggggagcugaggcucuggggg ccugggccucugcuccccagu uggggagcugaggcucuggggguggccggggcugacccugggccucugcuccccagu chr8:144394159..144394216:-
chr5_1081 -2.6 0.15 ± 0.09 TRUE 1 1 0 0 yes hsa-miR-584-5p blast uuaugguuugccugggacu uuccaggccaaccaggcug uuaugguuugccugggacugaggaauuugcugggauaugucaguuccaggccaaccaggcug chr5:149062332..149062394:-
chr1_119 -2.6 0.15 ± 0.09 STAR 1 1 0 0 yes hsa-miR-3120-5p blast cacagcaaguguagacaggca ccugucugugccugcuguaca ccugucugugccugcuguacaggugagcggauguucugcacagcaaguguagacaggca chr1:172138819..172138878:+
chr22_3486 -2.6 0.15 ± 0.09 TRUE 2 1 0 1 yes hsa-miR-4766-5p blast ucugaaagagcaguuggug uagcaauugcucuuuuggaagg ucugaaagagcaguugguguuuauuuuuuacuaaauagcaauugcucuuuuggaagg chr22:40813890..40813947:-
chr10_1898 -2.6 0.15 ± 0.09 TRUE 2 2 0 0 yes hsa-miR-146b-5p blast ugagaacugaauuccauaggcu ccuguggacucaguucuggu ugagaacugaauuccauaggcugugagcucuagcaaugcccuguggacucaguucuggu chr10:102436519..102436578:+
chr8_1604 -2.7 0.15 ± 0.09 STAR 1 1 0 0 yes hsa-miR-4659b-5p blast uucuucuuagacauggcagcu uugccaugucuaagaagaaaa uugccaugucuaagaagaaaauuuuucuccaaaguuuucuucuuagacauggcagcu chr8:6745174..6745231:-
chr2_370 -2.7 0.15 ± 0.09 TRUE 2 2 0 0 yes hsa-miR-3679-5p blast ugaggauauggcagggaagggg ccuuccccccaguaaucuucauc ugaggauauggcagggaaggggaguuucccucuauucccuuccccccaguaaucuucauc chr2:134127129..134127189:+
chr16_2808 -2.7 0.15 ± 0.09 STAR 1 1 0 0 yes hsa-miR-328-5p blast cuggcccucucugcccuuccg ggggggcaggaggggcucaggg ggggggcaggaggggcucagggagaaagugcauacagccccuggcccucucugcccuuccg chr16:67202327..67202388:-
chr6_1168 -2.7 0.15 ± 0.09 TRUE 2 2 0 0 yes hsa-miR-6780b-5p blast uggggaaggcuuggcagggaa ccuugucuccuuucccuag uggggaaggcuuggcagggaagacacaugagcagugccuccacuucacgccucucccuugucuccuuucccuag chr6:43434546..43434620:+
chr22_3482 -2.8 0.15 ± 0.09 STAR 1 1 0 0 yes hsa-miR-3928-5p blast ggaggaaccuuggagcuucggc ugaagcucuaagguuccgccugc ugaagcucuaagguuccgccugcgggcaggaagcggaggaaccuuggagcuucggc chr22:31160061..31160117:-
chrX_3548 -2.8 0.15 ± 0.09 TRUE 1 1 0 0 yes hsa-miR-500a-5p blast uaauccuugcuaccugggugagag ugcacccaggcaaggauucug uaauccuugcuaccugggugagagugcuuucugaaugcagugcacccaggcaaggauucug chrX:50010680..50010741:+
chr17_3020 -2.8 0.15 ± 0.09 STAR 1 1 0 0 yes hsa-miR-338-5p blast uccagcaucagugauuuuguu caauauccuggugcugagu caauauccuggugcugagugaugacucaggcgacuccagcaucagugauuuuguu chr17:81125887..81125942:-
chr7_1411 -2.8 0.15 ± 0.09 TRUE 1 1 0 0 yes hsa-miR-4655-5p blast acaccggggauggcagagggu ccucgucagguccccggggagc acaccggggauggcagagggucgugggaaaguguugacccucgucagguccccggggagc chr7:1844185..1844245:-
chr7_1426 -2.8 0.15 ± 0.09 TRUE 1 1 0 0 yes hsa-miR-3146 blast caugcuaggauagaaagaauggg cuucuuucuauccuaguauaac cuucuuucuauccuaguauaacuugaagaauucaaauagucaugcuaggauagaaagaauggg chr7:19705364..19705427:-
chrX_3669 -2.8 0.15 ± 0.09 TRUE 3 3 0 0 yes hsa-miR-450a-5p blast uuuugcgauguguuccuaaua uugggaacauuuugcauguau uuuugcgauguguuccuaauaugcacuauaaauauauugggaacauuuugcauguau chrX:134540357..134540414:-
chr16_2756 -2.8 0.15 ± 0.09 TRUE 1 1 0 0 yes hsa-miR-5189-5p blast ucugggcacaggcggaugga caaccgucagagcccagacc ucugggcacaggcggauggacaggcuggccucuggaugaccugccaaccgucagagcccagacc chr16:88468942..88469006:+
chr2_350 -2.8 0.15 ± 0.09 TRUE 1 1 0 0 yes hsa-miR-3127-5p blast aucagggcuuguggaauggga cccuucugcaggccugcugg aucagggcuuguggaaugggaaggagaagggacgcuuccccuucugcaggccugcugg chr2:96798287..96798345:+
chrX_3671 -2.8 0.15 ± 0.09 TRUE 3 3 0 0 yes hsa-miR-450a-5p blast uuuugcgauguguuccuaaua uuggggacauuuugcauucau uuuugcgauguguuccuaauauguaauauaaauguauuggggacauuuugcauucau chrX:134540528..134540585:-
chr1_218 -2.9 0.15 ± 0.09 TRUE 1 1 0 0 yes hsa-miR-1262 blast ugaugggugaauuuguagaa cuacaaauucaccccucaca cuacaaauucaccccucacauuaucuacaauggugaugggugaauuuguagaa chr1:68183579..68183632:-
chr11_2006 -2.9 0.15 ± 0.09 TRUE 1 1 0 0 yes hsa-miR-3159 blast uaggauuacaagugucggcc cucacgccuguaaucccagc uaggauuacaagugucggccacgggcugggcacaguggcucacgccuguaaucccagc chr11:18387795..18387853:+
chr8_1689 -2.9 0.15 ± 0.09 TRUE 1 1 0 0 yes hsa-miR-6848-5p blast ugggggcugggaugggccauggu uguggucucuuggcccccagg ugggggcugggaugggccauggugugcucugaucccccuguggucucuuggcccccagg chr8:144317251..144317310:-
chr17_2912 -2.9 0.15 ± 0.09 TRUE 2 2 0 0 yes hsa-miR-497-5p blast cagcagcacacugugguuugua caacccaccccgguccugcuccc caacccaccccgguccugcucccgccccagcagcacacugugguuugua chr17:7017977..7018026:-
chr19_3178 -3.0 0.15 ± 0.09 TRUE 1 1 0 0 yes hsa-miR-5088-5p blast cagggcucagggauuggauggag cccuucuuccugggcccucagau cagggcucagggauuggauggaggugaugggggcaggggaugggucucacccucccuucuuccugggcccucagau chr19:49682121..49682197:+
chr19_3243 -3.0 0.15 ± 0.09 TRUE 1 1 0 0 yes hsa-miR-6802-5p blast gcuagguggggggcuugaagc uucaccccucucaccuaagcag gcuagguggggggcuugaagccccgagaugccucacgucuucaccccucucaccuaagcag chr19:55239911..55239972:-
chr14_2494 -3.0 0.15 ± 0.09 TRUE 3 3 0 0 yes hsa-miR-411-5p blast auaguagaccguauagcguacg uauguaacacgguccacuaacc auaguagaccguauagcguacgcuuuaucugugacguauguaacacgguccacuaacc chr14:101023338..101023396:+
chr15_2597 -3.0 0.15 ± 0.09 TRUE 2 2 0 0 yes hsa-miR-184 blast uggacggagaacugauaagggu ccuuaucacuuuuccagcccagc ccuuaucacuuuuccagcccagcuuugugacuguaaguguuggacggagaacugauaagggu chr15:79209799..79209861:+
chr4_806 -3.0 0.15 ± 0.09 TRUE 1 1 0 0 yes hsa-miR-548t-5p blast ugcaaaagugaucgugguu ccacaauuacuuuugcacc ugcaaaagugaucgugguuuuugcaauuuuuuaaugacaaaaaccacaauuacuuuugcacc chr4:173268166..173268228:+
chr14_2497 -3.1 0.00 ± 0.01 STAR 2 2 0 0 yes hsa-miR-376c-5p blast aacauagaggaaauuccacgu guggauauuccuucuauguuua guggauauuccuucuauguuuauguuauuuaugguuaaacauagaggaaauuccacgu chr14:101039694..101039752:+
chr4_775 -3.1 0.00 ± 0.01 TRUE 1 1 0 0 yes hsa-miR-3684 blast uguuagaccuaguacacguc ccuguacuagguuuaacaug ccuguacuagguuuaacauguugagcauuacucauguuagaccuaguacacguc chr4:98997397..98997451:+
chr19_3142 -3.2 0.00 ± 0.01 TRUE 1 1 0 0 yes hsa-miR-181d-5p blast aacauucauuguugucggugg accgggggaugaaugucac aacauucauuguugucgguggguugugaggacugaggccagacccaccgggggaugaaugucac chr19:13874909..13874973:+
chr15_2582 -3.2 0.00 ± 0.01 TRUE 2 2 0 0 yes hsa-miR-190a-5p blast ugauauguuugauauauuagg cuauauaucaaacauauuccu ugauauguuugauauauuagguuguuauuuaauccaacuauauaucaaacauauuccu chr15:62823970..62824028:+
chr13_2337 -3.2 0.00 ± 0.01 STAR 1 1 0 0 yes hsa-miR-2276-5p blast ucugcaagugucagaggcgagg gcccucugucaccuugcagacg gcccucugucaccuugcagacggcuuucucuccgaaugucugcaagugucagaggcgagg chr13:24162430..24162490:+
chr7_1462 -3.2 0.00 ± 0.01 TRUE 123 123 0 0 no hsa-miR-106b-5p blast uaaagugcugacagugcaga cccaccucccgcuccagc cccaccucccgcuccagcccugccggggcuaaagugcugacagugcaga chr7:100094043..100094092:-
chrX_3542 -3.2 0.00 ± 0.01 TRUE 1 1 0 0 yes hsa-miR-500a-5p blast uaauccuugcuaccugggugagag ugcaccugggcaaggauucug uaauccuugcuaccugggugagagugcugucugaaugcaaugcaccugggcaaggauucug chrX:50008442..50008503:+
chr12_2218 -3.3 0.00 ± 0.01 STAR 2 1 0 1 yes hsa-miR-6758-5p blast acucauucuccucuguccaga agagaggggaaggaugugaugu agagaggggaaggaugugaugugagcagaugguucucacucauucuccucuguccaga chr12:57512693..57512751:+
chr1_303 -3.3 0.00 ± 0.01 TRUE 1 1 0 0 yes hsa-miR-6741-5p blast gugggugcuggugggagccg gcucucucccucaccc gugggugcuggugggagccgugcccuggccacucauucggcucucucccucaccc chr1:225922082..225922137:-
chr17_2848 -3.3 0.00 ± 0.01 TRUE 1 1 0 0 yes hsa-miR-4723-5p blast ugggggagccaugagauaagag ccucucuggcuccucccca ugggggagccaugagauaagagcaccuccuagagaauguugaacuaaaggugcccucucuggcuccucccca chr17:28360659..28360731:+
chr6_1132 -3.3 0.00 ± 0.01 TRUE 4 4 0 0 yes hsa-miR-3143 blast auaacauuguaaagcgcuu acucuuuacaauguuucu auaacauuguaaagcgcuucuuucgcgguugggcuggagcaacucuuuacaauguuucu chr6:27147628..27147687:+
chr9_1753 -3.4 0.00 ± 0.01 STAR 1 1 0 0 yes hsa-miR-23b-5p blast aucacauugccagggauuacc ggguuccuggcaugcugauuu ggguuccuggcaugcugauuugugacuuaagauuaaaaucacauugccagggauuacc chr9:95085227..95085285:+
chr10_1924 -3.4 0.00 ± 0.01 TRUE 2 2 0 0 yes hsa-miR-3611 blast uugugaagaaagaaauucu aauuucuuuuucuucacaauu aauuucuuuuucuucacaauuaugaaagaaaagaaauugugaagaaagaaauucu chr10:35079610..35079665:-
chr17_2898 -3.4 0.00 ± 0.01 TRUE 3 3 0 0 yes hsa-miR-6516-5p blast uuugcaguaacaggugugagca aucauguaugauacugcaaaca uuugcaguaacaggugugagcauucuagcagcaguuugaugaucauguaugauacugcaaaca chr17:77089427..77089490:+
chr4_824 -3.5 0.00 ± 0.01 STAR 1 1 0 0 yes hsa-miR-95-5p blast uucaacggguauuuauugagc ucaauaaaugucuguugaauu ucaauaaaugucuguugaauugaaaugcguuacauucaacggguauuuauugagc chr4:8005312..8005367:-
chr7_1493 -3.7 0.00 ± 0.01 TRUE 1 1 0 0 yes hsa-miR-10399-5p blast aauuacagauugucucagaga ucucggacaagcuguaggucc aauuacagauugucucagagaaaacaaaugaguuacucucucggacaagcuguaggucc chr7:139044098..139044157:-
chr14_2496 -3.9 0.00 ± 0.01 STAR 1 1 0 0 yes hsa-miR-543 blast gaaguugcccguguuuuuuuc aacauucgcggugcacuucuu gaaguugcccguguuuuuuucgcuuuauuugugacgaaacauucgcggugcacuucuu chr14:101031996..101032054:+
chr7_1460 -4.0 0.00 ± 0.01 TRUE 7090 7090 0 0 no hsa-miR-93-5p blast caaagugcuguucgugcagguag uccugugcuacagaccuuccuu uccugugcuacagaccuuccuuucuguccucccgucuuggaccucaguccugggggcuccaaagugcuguucgugcagguag chr7:100093814..100093896:-
chr19_3224 -4.0 0.00 ± 0.01 STAR 7 7 0 0 no hsa-miR-23a-5p blast aucacauugccagggauuucc gguuccuggggaugggauuu gguuccuggggaugggauuugcuuccugucacaaaucacauugccagggauuucc chr19:13836594..13836649:-
chr3_543 -4.0 0.00 ± 0.01 STAR 7 7 0 0 no hsa-miR-128-2-5p blast ucacagugaaccggucucu gggccgauacacuguacgaga gggccgauacacuguacgagagugaguagcaggucucacagugaaccggucucu chr3:35744491..35744545:+
chr10_1965 -4.0 0.00 ± 0.01 TRUE 7 7 0 0 no hsa-miR-1287-5p blast ugcuggaucagugguucgagu ucuagccacagaugcagugau ugcuggaucagugguucgagucugagccuuuaaaagccacucuagccacagaugcagugau chr10:98395231..98395292:-
chr19_3113 -4.0 0.00 ± 0.01 TRUE 146 146 0 0 no hsa-miR-7-5p blast uggaagacuagugauuuuguugu auuagaguggcuguggucuagugcu auuagaguggcuguggucuagugcuguguggaagacuagugauuuuguugu chr19:4770671..4770722:+
chr17_3006 -4.2 0.00 ± 0.00 STAR 1 1 0 0 yes hsa-miR-301a-5p blast cagugcaauaguauugucaaagc ucugacuuuauugcacuacu ucugacuuuauugcacuacuguacuuuacagcuagcagugcaauaguauugucaaagc chr17:59151148..59151206:-
chr7_1439 -4.2 0.00 ± 0.00 TRUE 1 1 0 0 yes hsa-miR-4657 blast aagaauguggaaguggucugaggc caagaacacuaccauauauggc aagaauguggaaguggucugaggcauauagaguauaugccaagaacacuaccauauauggc chr7:44881742..44881803:-
chr1_42 -4.6 0.00 ± 0.00 TRUE 6 6 0 0 no hsa-miR-6735-5p blast cagggcagagggcacaggaau gccuguggcuccucccucagga cagggcagagggcacaggaaucugaggugacuggcacagaagacucaggccuguggcuccucccucagga chr1:43448543..43448613:+
chr17_3007 -5.0 0.00 ± 0.00 TRUE 1 1 0 0 yes hsa-miR-3064-5p blast ucuggcuguuguggugugca cacacugcaacaccuuaca ucuggcuguuguggugugcaaaacuccguacauugcuauuuugccacacugcaacaccuuaca chr17:64500774..64500837:-
chr9_1837 -5.0 0.00 ± 0.00 TRUE 7 7 0 0 no hsa-miR-32-3p blast caauuuagugugugugauauu ugcaugcacacggguauggc caauuuagugugugugauauuuucacaugagugcaugcacacggguauggc chr9:109046201..109046252:-
chr9_1747 -5.1 0.00 ± 0.00 TRUE 182141 182141 0 0 no hsa-let-7a-5p blast ugagguaguagguuguauagu ugugauuccuuuucaccauucacc ugugauuccuuuucaccauucacccuggauguucucuucacugugggaugagguaguagguuguauagu chr9:94175913..94175982:+
chr5_991 -5.3 0.00 ± 0.00 TRUE 68 68 0 0 no hsa-miR-1294 blast ugugagguuggcauuguugu uucauuuaugaucucaccga uucauuuaugaucucaccgaguccugugagguuggcauuguugu chr5:154347128..154347172:+
chr19_3115 -5.3 0.00 ± 0.00 TRUE 4 4 0 0 no hsa-miR-4747-5p blast ugagggaaggaggcuuggucuua ggaggggccucugcacacugucg ggaggggccucugcacacugucgggaggggccgucccaccucggcucguuucccauugagggaaggaggcuuggucuua chr19:4932628..4932707:+
chr16_2764 -5.5 0.00 ± 0.00 STAR 3 3 0 0 no hsa-miR-6511b-5p blast ccucaccaccccuucugccugc aggcagaaguggggcugacagg aggcagaaguggggcugacagggcagaggguugcgcccccucaccaccccuucugccugc chr16:2106679..2106739:-
chr16_2770 -5.5 0.00 ± 0.00 STAR 3 3 0 0 no hsa-miR-6511b-5p blast ccucaccaccccuucugccugc aggcagaaguggggcugacagg aggcagaaguggggcugacagggcagaggguugcgcccccucaccaccccuucugccugc chr16:15134076..15134136:-
chr8_1695 -6.4 0.00 ± 0.00 TRUE 2 2 0 0 no hsa-miR-6850-5p blast gugcggaacgcuggccggggcgg gcccggccggaacgccgcacuc gugcggaacgcuggccggggcgggaggggaagggacgcccggccggaacgccgcacuc chr8:144791933..144791991:-
chr19_3103 -6.4 0.00 ± 0.00 STAR 1 1 0 0 no hsa-miR-3187-5p blast uuggccauggggcugcgcgg gggcagcguguggcugaagg gggcagcguguggcugaaggucaccauguucuccuuggccauggggcugcgcgg chr19:813592..813646:+
chr17_3018 -6.4 0.00 ± 0.00 TRUE 1 1 0 0 no hsa-miR-636 blast ugugcuugcucgucccgcccgc gggcggggccggccccgcugc gggcggggccggccccgcugccuggaauuaaccccgcugugcuugcucgucccgcccgc chr17:76736466..76736525:-
chr9_1700 -6.4 0.00 ± 0.00 TRUE 1 1 0 0 no hsa-miR-4665-5p blast cugggggacgcgugagcgcgagcc cucggccgcggcgcguagcccccgcca cugggggacgcgugagcgcgagccgcuuccucacggcucggccgcggcgcguagcccccgcca chr9:6007834..6007897:+
chr19_3140 -6.5 0.00 ± 0.00 TRUE 2 2 0 0 no hsa-miR-181c-5p blast aacauucaaccugucggugagu ccaucgaccguugaguggacc aacauucaaccugucggugaguuugggcagcucaggcaaaccaucgaccguugaguggacc chr19:13874724..13874785:+
chr20_3329 -6.5 0.00 ± 0.00 STAR 6 6 0 0 no hsa-miR-1972 blast ugagguaguaguuuguguc ccaggcacaguggcucacg ugagguaguaguuugugucuuucaagaaauugguucaggccaggcacaguggcucacg chr20:56031224..56031282:-
chr19_3182 -6.5 0.00 ± 0.00 TRUE 2 2 0 0 no hsa-miR-4750-5p blast ucgggcggaggugguugagugc gccugacccacccccucccgcagc ucgggcggaggugguugagugccgacuggcgccugacccacccccucccgcagc chr19:49888177..49888231:+
chr10_1995 -6.7 0.00 ± 0.00 TRUE 2 2 0 0 no hsa-miR-202-3p blast aagagguauagggcauggga cagugcaccugcaccugcucc aagagguauagggcaugggaaaacggggcggucggguccuccccagcggcaccugcaccagugcaccugcaccugcucc chr10:133247479..133247558:-
chr19_3192 -6.7 0.00 ± 0.00 TRUE 1 1 0 0 no hsa-miR-6805-5p blast uagggggcggcuuguggagu ucugcucccccgcccccagg uagggggcggcuuguggaguguaugggcugagccuugcucugcucccccgcccccagg chr19:55388185..55388243:+
chr6_1265 -6.9 0.00 ± 0.00 TRUE 4 4 0 0 no hsa-miR-6721-5p blast ugggcaggggcuuauuguaggag ccugcuuuaacccuuccccagg ugggcaggggcuuauuguaggagucucugaagagagcuguggacugaccugcuuuaacccuuccccagg chr6:32170037..32170106:-
chr2_459 -7.7 0.00 ± 0.00 TRUE 2 2 0 0 no hsa-miR-4435 blast auggccagagcucacacagagg gcagugugacucagcaggccaaca auggccagagcucacacagagggaugagugcacuucaccugcagugugacucagcaggccaaca chr2:111321018..111321082:-
chr2_344 -7.7 0.00 ± 0.00 TRUE 2 2 0 0 no hsa-miR-4435 blast auggccagagcucacacagagg gcagugugacucagcaggccaaca auggccagagcucacacagagggaugagugcacuucaccugcagugugacucagcaggccaaca chr2:87629763..87629827:+
chr2_369 -7.8 0.00 ± 0.00 TRUE 2 2 0 0 no hsa-miR-3679-5p blast ugaggauauggcagggaaggggagu uccccuuuccuguaauuuuuuagagcacc uccccuuuccuguaauuuuuuagagcaccuaguuagaggccccacguggugaggauauggcagggaaggggagu chr2:134127080..134127154:+
chr13_2377 -7.9 0.00 ± 0.00 TRUE 160 160 0 0 no hsa-miR-17-5p blast caaagugcuuacagugcagguag ccuuguaaaacugaagauugugac ccuuguaaaacugaagauugugaccagucagaauaaugucaaagugcuuacagugcagguag chr13:91350578..91350640:+
chr1_267 -1.0e+1 0.00 ± 0.00 TRUE 3 3 0 0 no hsa-miR-1843 blast uauggaggucucugucuggc cugaucguuccccuccguaca uauggaggucucugucuggcuuaggacagcuggcuaagucugaucguuccccuccguaca chr1:175968399..175968459:-
chrX_3659 -1.0e+1 0.00 ± 0.00 TRUE 326 326 0 0 no hsa-miR-92a-3p blast uauugcacuugucccggccugu aagccguaaguucugauauu uauugcacuugucccggccuguggaagaaaggaggauuuuuaucgucuucuuauuuuaacuuuuaaaagccguaaguucugauauu chrX:134169479..134169565:-
chr15_2581 -1.2e+1 0.00 ± 0.00 TRUE 2 2 0 0 no hsa-miR-190a-5p blast ugauauguuugauauauuagg uagucucgagcucagucaaa uagucucgagcucagucaaaccuggaugccuuuucugcaggccucugugugauauguuugauauauuagg chr15:62823921..62823991:+
chr4_776 -2.9e+1 0.00 ± 0.00 TRUE 1 1 0 0 no hsa-miR-3684 blast uguuagaccuaguacacguc ccugugugggaccugaaauu uguuagaccuaguacacguccuuuagauucuuuaaaauucccaaauucuaucuuguuguggccugugugggaccugaaauu chr4:98997431..98997512:+


mature miRBase miRNAs not detected by miRDeep2


miRBase precursor idClicking this field will display a pdf of the structure and read signature of the miRNA. total read countthis is the sum of read counts for the mature and star miRNAs. mature read count(s)this is the number of reads that map to the miRNA hairpin and are contained in the sequence covered by the mature miRNA, including 2 nts upstream and 5 nts downstream. If more than one mature sequence is given this will be a comma separated list. In parenthesis are normalized read counts shown. star read countthis is the number of reads that map to the miRNA hairpin and are contained in the sequence covered by the star miRNA, including 2 nts upstream and 5 nts downstream. This field is empty unless a reference star miRNA was given as input to quantifier.pl. If more than one mature sequence is given this will be a comman separated list remaining readsthis is the number of reads that did not map to any of the mature and star sequences UCSC browserif a species name was input to miRDeep2, then clicking this field will initiate a UCSC blat search of the miRNA precursor sequence against the reference genome. NCBI blastnclicking this field will initiate a NCBI blastn search of the miRNA precursor sequence against the nr/nt database (non-redundant collection of all NCBI nucleotide sequences). miRBase mature sequence(s)this is/are the mature miRNA sequence(s) input to quantifier.pl. miRBase star sequence(s)this is/are the star miRNA sequence(s) input to quantifier.pl. This field is empty unless a reference star miRNA was given as input to quantifier.pl. miRBase precursor sequencethis is the precursor miRNA sequence input to quantifier.pl.
hsa-mir-451a 1148 1145
0
 3 - blast
aaaccguuaccauuacugaguu
-
cuugggaauggcaaggaaaccguuaccauuacugaguuuaguaaugguaaugguucucuugcuauacccaga
hsa-mir-142 1155 1154
0
 1 - blast
cauaaaguagaaagcacuacu
uguaguguuuccuacuuuaugga
-
gacagugcagucacccauaaaguagaaagcacuacuaacagcacuggaggguguaguguuuccuacuuuauggaugaguguacugug
hsa-mir-320d-2 40 40
0
 0 - blast
aaaagcuggguugagagga
-
uaucaauaagccuucucuucccaguucuucuuggagucaggaaaagcuggguugagaggagcagaaaagaaa
hsa-mir-1255b-2 31 31
0
 0 - blast
cggaugagcaaagaaagugguu
aaccacuuucuuugcucaucca
-
ucuuacggaugagcaaagaaagugguuugcgccucaagaaaccacuuucuuugcucauccauaagga
hsa-mir-1246 20 20
0
 0 - blast
aauggauuuuuggagcagg
-
uguauccuugaauggauuuuuggagcaggaguggacaccugacccaaaggaaaucaauccauaggcuagcaau
hsa-mir-3615 18 18
0
 0 - blast
ucucucggcuccucgcggcuc
-
gacucugggacgcucagacgccgcgcggggcggggauuggucugugguccucucucggcuccucgcggcucgcggcggccgacgguu
hsa-mir-195 17 17
0
 0 - blast
ccaauauuggcugugcugcucc
uagcagcacagaaauauuggc
-
agcuucccuggcucuagcagcacagaaauauuggcacagggaagcgagucugccaauauuggcugugcugcuccaggcaggguggug
hsa-mir-1290 16 16
0
 0 - blast
uggauuuuuggaucaggga
-
gagcgucacguugacacucaaaaaguuucagauuuuggaacauuucggauuuuggauuuuuggaucagggaugcucaa
hsa-mir-320e 11 11
0
 0 - blast
aaagcuggguugagaagg
-
cuccauggggccuucucuucccaguucuuccuggagucggggaaaagcuggguugagaaggugaaaagaaaaa
hsa-mir-941-5 10 10
0
 0 - blast
cacccggcugugugcacaugugc
-
ugugcacaugugcccagggcccgggacagcgccacggaagaggacgcacccggcugugugcacaugugccca
hsa-mir-424 18 18
0
 0 - blast
cagcagcaauucauguuuugaa
caaaacgugaggcgcugcuau
-
cgaggggauacagcagcaauucauguuuugaaguguucuaaaugguucaaaacgugaggcgcugcuauacccccucguggggaagguagaaggugggg
hsa-mir-3613 8 8
0
 0 - blast
acaaaaaaaaaagcccaacccuuc
uguuguacuuuuuuuuuuguuc
-
ugguuggguuuggauuguuguacuuuuuuuuuuguucguugcauuuuuaggaacaaaaaaaaaagcccaacccuucacaccacuuca
hsa-mir-4508 8 8
0
 0 - blast
gcggggcugggcgcgcg
-
aggacccagcggggcugggcgcgcggagcagcgcugggugcagcgccugcgccggcagcugcaagggccg
hsa-mir-1285-2 7 7
0
 0 - blast
ucugggcaacaaagugagaccu
-
uuugggaggccgaggcuggugcaucacuugagcccagcaauuugagaccaaucugggcaacaaagugagaccuccgucucuacaaaga
hsa-mir-5187 6 6
0
 0 - blast
acugaauccucuuuuccucag
ugggaugagggauugaagugga
-
gacuaagggugggaugagggauugaaguggagcaggaaugcgcuuuucuccacugaauccucuuuuccucaggugg
hsa-mir-1301 5 5
0
 0 - blast
uugcagcugccugggagugacuuc
cgcucuaggcaccgcagca
-
ggauuguggggggucgcucuaggcaccgcagcacugugcuggggauguugcagcugccugggagugacuucacacaguccuc
hsa-mir-3960 20 5
0
 15 - blast
ggcggcggcggaggcggggg
-
ggcgccccggcuccccgcgcccccgaucggggccgccgcuaguaguggcggcggcggaggcgggggcagcggcggcggcggcggaggcgcc
hsa-mir-3605 11 10
0
 1 - blast
ccuccguguuaccuguccucuag
ugaggauggauagcaaggaagcc
-
acuuuauacguguaauugugaugaggauggauagcaaggaagccgcucccaccugacccucacggccuccguguuaccuguccucuaggugggacgcucg
hsa-mir-1224 5 5
0
 0 - blast
gugaggacucgggaggugg
ccccaccuccucucuccucag
-
gugaggacucgggagguggaggguggugccgccggggccgggcgcuguuucagcucgcuucuccccccaccuccucucuccucag
hsa-mir-5009 4 4
0
 0 - blast
uuggacuuuuucagauuuggggau
uccuaaaucugaaaguccaaaa
-
gaccagaaguguuuuggauuuuggacuuuuucagauuuggggauauuugcauuauacuuauccuaaaucugaaaguccaaaaccugaaaugaccaauaag
hsa-mir-576 5 5
0
 0 - blast
auucuaauuucuccacgucuuu
aagauguggaaaaauuggaauc
-
uacaauccaacgaggauucuaauuucuccacgucuuugguaauaagguuuggcaaagauguggaaaaauuggaauccucauucgauugguuauaacca
hsa-mir-6884 3 3
0
 0 - blast
cccaucaccuuuccgucuccccu
agaggcugagaaggugauguug
-
cccgcagaggcugagaaggugauguuggcucaagaaagggagauagaugguagcccaucaccuuuccgucuccccuag
hsa-mir-4433b 3 3
0
 0 - blast
caggaguggggggugggacgu
augucccacccccacuccugu
-
uguguucccuauccuccuuaugucccacccccacuccuguuugaauauuucaccagaaacaggaguggggggugggacguaaggaggaugggggaaagaaca
hsa-mir-378c 3 3
0
 0 - blast
acuggacuuggagucagaagagugg
-
ggaggccaucacuggacuuggagucagaagaguggagucgggucagacuucaacucugacuuugaagguggugagugccuc
hsa-mir-10401 3 3
0
 0 - blast
cgugugggaaggcguggggu
accucgccgucccgcccgccg
-
cgugugggaaggcguggggugcggaccccggcccgaccucgccgucccgcccgccg
hsa-mir-4804 3 3
0
 0 - blast
ugcuuaaccuugcccucgaaa
uuggacgguaagguuaagcaa
-
ucaguguauuuggacgguaagguuaagcaaggugcgucguaucuugcuuaaccuugcccucgaaauacacuga
hsa-mir-548d-2 11 8
0
 3 - blast
aaaaguaauugugguuuuugcc
aaaaguaauugugguuuuug
aaaaguaauugugguuuuugc
caaaaaccacaguuucuuuugc
aaaaguaauugugguuuuug
-
gagagggaagauuuagguuggugcaaaaguaauugugguuuuugccauugaaaguaauggcaaaaaccacaguuucuuuugcaccaaccuaauaaaa
hsa-mir-485 2 2
0
 0 - blast
gucauacacggcucuccucucu
agaggcuggccgugaugaauuc
-
acuuggagagaggcuggccgugaugaauucgauucaucaaagcgagucauacacggcucuccucucuuuuagu
hsa-mir-6818 3 2
0
 1 - blast
uugugugaguacagagagcauc
uugucucuuguuccucacacag
-
cuauuuugugugaguacagagagcaucugaauggguacaguuguugucucuuguuccucacacag
hsa-mir-1255a 2 2
0
 0 - blast
aggaugagcaaagaaaguagauu
-
auuggaaauccuuugaguugcuucucaaggaugagcaaagaaaguagauuuuuuagauucuaaagaaacuaucuucuuugcucauccuugagaagcaacuccuuauccauuaa
hsa-mir-12136 13 2
0
 11 - blast
gaaaaagucauggaggcc
-
gaaaaagucauggaggccaugggguuggcuugaaaccagcuuugggggguucgauuccuuccuuuuuuguc
hsa-mir-6847 2 2
0
 0 - blast
ggcucaugugucuguccucuuc
acagaggacaguggagugugagc
-
gacccacagaggacaguggagugugagcuggaaggagugggccuggcucaugugucuguccucuuccag
hsa-mir-548j 4 4
0
 0 - blast
caaaaacugcauuacuuuugc
aaaaguaauugcggucuuuggu
aaaaguaauugcggucuuu
-
gggcagccagugaauaguuagcuggugcaaaaguaauugcggucuuugguauuacuuucaguggcaaaaacugcauuacuuuugcaccagccuacuagaacgcugaguucag
hsa-mir-99b 2 2
0
 0 - blast
cacccguagaaccgaccuugcg
caagcucgugucuguggguccg
-
ggcacccacccguagaaccgaccuugcggggccuucgccgcacacaagcucgugucuguggguccguguc
hsa-mir-5090 2 2
0
 0 - blast
ccggggcagauugguguagggug
-
ucugagguacccggggcagauugguguagggugcaaagccugcccgcccccuaagccuucugcccccaacuccagccugucagga
hsa-mir-6751 2 2
0
 0 - blast
acugagccucucucucuccag
uugggggugagguuggugucugg
-
ucuucuugggggugagguuggugucuggccccagcagcccagacugagccucucucucuccag
hsa-mir-6842 1 1
0
 0 - blast
uggggguggucucuagccaagg
uuggcuggucucugcuccgcag
-
agcccuggggguggucucuagccaaggcucuggggucucacccuuggcuggucucugcuccgcag
hsa-mir-7113 1 1
0
 0 - blast
uccagggagacagugugugag
ccucccugcccgccucucugcag
-
cuccagggagacagugugugaggccucuugccauggccucccugcccgccucucugcag
hsa-mir-4521 1 1
0
 0 - blast
gcuaaggaaguccugugcucag
-
ucggcuaaggaaguccugugcucaguuuuguagcaucaaaacuaggauuucucuuguuac
hsa-mir-11400 1 1
0
 0 - blast
ucggcuguguaucucuguguc
-
caagggcgacucggcuguguaucucugugucagaagcuuagccacaguguggcacagucguguccuuccugcucaca
hsa-mir-6857 1 1
0
 0 - blast
uuggggauugggucaggccagu
ugacugagcuucuccccacag
-
gcuuguuggggauugggucaggccaguguucaagggccccuccucuaguacucccuguuuguguucugccacugacugagcuucuccccacag
hsa-mir-378i 1 1
0
 0 - blast
acuggacuaggagucagaagg
-
gggagcacuggacuaggagucagaagguggaguucugggugcuguuuucccacucuugggcccugggcauguucug
hsa-mir-4429 1 1
0
 0 - blast
aaaagcugggcugagaggcg
-
agggagaaaagcugggcugagaggcgacuggugucuaauuuguuugucucuccaacucagacugccuggccca
hsa-mir-3149 1 1
0
 0 - blast
uuuguauggauauguguguguau
-
auacauacauguacacacacaugucauccacacacauacauauauauauguuuguauggauauguguguguauguguguguau
hsa-mir-1275 1 1
0
 0 - blast
gugggggagaggcuguc
-
ccucugugagaaagggugugggggagaggcugucuugugucuguaaguaugccaaacuuauuuuccccaaggcagaggga
hsa-mir-3614 1 1
0
 0 - blast
ccacuuggaucugaaggcugccc
uagccuucagaucuugguguuuu
-
gguucugucuugggccacuuggaucugaaggcugccccuuugcucucugggguagccuucagaucuugguguuuugaauucuuacu
hsa-mir-19b-1 4 4
0
 0 - blast
ugugcaaauccaugcaaaacuga
aguuuugcagguuugcauccagc
-
cacuguucuaugguuaguuuugcagguuugcauccagcugugugauauucugcugugcaaauccaugcaaaacugacugugguagug
hsa-mir-8086 2 0
0
 2 - blast
ugcuagucuggacugauauggu
-
uccacuagucugcuagucuggacugauaugguuagcuuuuuuuuuuuuuugagauggagucuggcucuguugcccaggcuggaguacaguggc
hsa-mir-8485 5 0
0
 5 - blast
cacacacacacacacacguau
-
ucugugauauacguguguguguguguguauauagcauauguguauacauacacacacacacacacacacacacacacacacacacacguau
hsa-mir-548ay 9 6
0
 3 - blast
aaaaguaauugugguuuuug
caaaaccgcgauuacucuugca
aaaaguaauugugguuuuugc
aaaaguaauugugguuuuug
-
agaagaugcuuacuacuagguuggugcaaaaguaauugugguuuuugcauuuaaaguaauggccaaaaccgcgauuacucuugcacgaaccuaacgguaacacuucu
hsa-mir-558 3 0
0
 3 - blast
ugagcugcuguaccaaaau
-
gugugugugugugugugugguuauuuugguauaguagcucuagacucuauuauaguuuccugagcugcuguaccaaaauaccacaaacgggcug
hsa-mir-3665 4 0
0
 4 - blast
agcaggugcggggcggcg
-
gcgggcggcggcggcggcagcagcagcaggugcggggcggcggccgcgcuggccgcucgacuccgcagcugcucguucugcuucuccagcuugcgcaccagcucc
hsa-mir-548ad 7 4
0
 3 - blast
aaaaguaauugugguuuuug
gaaaacgacaaugacuuuugca
aaaaguaauugugguuuuug
-
cuguuagguuggugcaaaaguaauugugguuuuugaaaguaacuuggcgaaaacgacaaugacuuuugcaccaaucuaauac
hsa-mir-1273c 5 0
0
 5 - blast
ggcgacaaaacgagacccuguc
-
ugcagccugggcgacaaaacgagacccugucuuuuuuuuuuucugagacagagucucguucuguugcccaagcugga
hsa-mir-1285-1 7 7
0
 0 - blast
gaucucacuuuguugcccagg
ucugggcaacaaagugagaccu
-
uguagagauaggaucucacuuuguugcccaggcuggucucaaacuccuggucugggcaacaaagugagaccuuaucucuacaag
hsa-mir-4472-2 1 0
0
 1 - blast
ggugggggguguuguuuu
-
uggugggggugggggguguuguuuuuguuuuugagacagagucuugcuccgucgcccaggccggagu
hsa-mir-3648-2 1 0
0
 1 - blast
agccgcggggaucgccgaggg
-
cgcgacugcggcggcggugguggggggagccgcggggaucgccgagggccggucggccgccccgggugccgcgcggugccgccggcggcggugaggccccgcgcgugugucccggcugcggucggccgcgcucgagggguccccguggcguccccuuccccgccggccgccuuucucgcg
hsa-mir-548ae-2 4 4
0
 0 - blast
aaaaguaauugugguuuuug
caaaaacugcaauuacuuuca
aaaaguaauugugguuuuug
-
ugugcaaaaguaauugugguuuuugucauuuaaaaguaauggcaaaaacugcaauuacuuucacacc
hsa-mir-4325 1 0
0
 1 - blast
uugcacuugucucaguga
-
ggggaagauguugcacuugucucagugagagaugcuucuagauccaggaggcagaccucaaggauggagagaaggcagauccuuugagau