chr1	173833038	173837125	GAS5_ENST00000450589.1	.	-	chr1	173833040	173834009	ENST00000454813.1	.	-
chr1	173833038	173837125	GAS5_ENST00000450589.1	.	-	chr1	173833042	173834044	ENST00000422207.1	.	-
chr1	173833038	173837125	GAS5_ENST00000450589.1	.	-	chr1	173833092	173834043	ENST00000444470.1	.	-
chr1	173833038	173837125	GAS5_ENST00000450589.1	.	-	chr1	173833118	173834039	ENST00000434796.1	.	-
chr1	173833038	173837125	GAS5_ENST00000450589.1	.	-	chr1	173834306	173837126	ENST00000416952.1	.	-
chr1	173833038	173837125	GAS5_ENST00000450589.1	.	-	chr1	173834387	173837129	ENST00000456293.1	.	-
chr1	173833038	173837125	GAS5_ENST00000450589.1	.	-	chr1	173834491	173837127	ENST00000443799.1	.	-
chr1	173833038	173837125	GAS5_ENST00000450589.1	.	-	chr1	173834662	173836867	ENST00000451607.1	.	-
chr1	173833038	173837125	GAS5_ENST00000450589.1	.	-	chr1	173834956	173837125	ENST00000421068.1	.	-
chr1	173833038	173837125	GAS5_ENST00000450589.1	.	-	chr1	173834997	173836827	ENST00000432536.1	.	-
chr1	173833038	173837125	GAS5_ENST00000450589.1	.	-	chr1	173835005	173836178	ENST00000425771.1	.	-
chr1	173833038	173837125	GAS5_ENST00000450589.1	.	-	chr1	173835354	173837125	ENST00000458220.1	.	-
chr1	173833038	173837125	GAS5_ENST00000450589.1	.	-	chr1	173833038	173837127	ENST00000449289.1	.	-
chr1	173833038	173837125	GAS5_ENST00000450589.1	.	-	chr1	173833039	173835344	ENST00000414075.1	.	-
chr1	173833038	173837125	GAS5_ENST00000450589.1	.	-	chr1	173833039	173836181	ENST00000436285.1	.	-
chr1	173833038	173837125	GAS5_ENST00000450589.1	.	-	chr1	173833039	173836181	ENST00000448718.1	.	-
chr1	173833038	173837125	GAS5_ENST00000450589.1	.	-	chr1	173833039	173836181	ENST00000456812.2	.	-
chr1	173833038	173837125	GAS5_ENST00000450589.1	.	-	chr1	173833039	173837121	ENST00000452197.1	.	-
chr1	173833038	173837125	GAS5_ENST00000450589.1	.	-	chr1	173833039	173837125	ENST00000412059.1	.	-
chr1	173833038	173837125	GAS5_ENST00000450589.1	.	-	chr1	173833039	173837125	ENST00000450589.1	.	-
chr1	173833038	173837125	GAS5_ENST00000450589.1	.	-	chr1	173833039	173837127	ENST00000431268.1	.	-
chr1	173833038	173837125	GAS5_ENST00000450589.1	.	-	chr1	173833039	173837127	ENST00000436656.1	.	-
chr1	173833038	173837125	GAS5_ENST00000450589.1	.	-	chr1	173833039	173838020	ENST00000430245.1	.	-
chr1	173833038	173837125	GAS5_ENST00000450589.1	.	-	chr1	173833040	173836181	ENST00000422183.1	.	-
chr1	173833038	173837125	GAS5_ENST00000450589.1	.	-	chr1	173833049	173836953	ENST00000454068.1	.	-
chr1	173833038	173837125	GAS5_ENST00000450589.1	.	-	chr1	173833154	173837127	ENST00000449589.1	.	-
chr1	173833038	173837125	GAS5_ENST00000450589.1	.	-	chr1	173833622	173836168	ENST00000422008.1	.	-
chr1	173833038	173837125	GAS5_ENST00000450589.1	.	-	chr1	173833769	173836181	ENST00000442067.1	.	-
chr1	173833038	173837125	GAS5_ENST00000450589.1	.	-	chr1	173834093	173837127	ENST00000455838.1	.	-
chr10	119243803	119304579	EMX2OS_NR_002791	.	-	chr10	119250160	119254199	ENST00000423419.1	.	-
chr10	119243803	119304579	EMX2OS_NR_002791	.	-	chr10	119232726	119245709	ENST00000424371.1	.	-
chr10	119243803	119304579	EMX2OS_NR_002791	.	-	chr10	119232726	119301830	ENST00000450314.1	.	-
chr10	119243803	119304579	EMX2OS_NR_002791	.	-	chr10	119249996	119301845	ENST00000440007.1	.	-
chr11	2016405	2019105	H19_ENST00000414790.1	.	-	chr11	2016406	2017421	ENST00000442037.1	.	-
chr11	2016405	2019105	H19_ENST00000414790.1	.	-	chr11	2016406	2018447	ENST00000411861.1	.	-
chr11	2016405	2019105	H19_ENST00000414790.1	.	-	chr11	2016406	2018690	ENST00000439725.1	.	-
chr11	2016405	2019105	H19_ENST00000414790.1	.	-	chr11	2016406	2019044	ENST00000412788.1	.	-
chr11	2016405	2019105	H19_ENST00000414790.1	.	-	chr11	2016406	2019105	ENST00000414790.1	.	-
chr11	2016405	2019105	H19_ENST00000414790.1	.	-	chr11	2016408	2019072	ENST00000535745.1	.	-
chr11	2016405	2019105	H19_ENST00000414790.1	.	-	chr11	2016440	2019027	ENST00000422826.1	.	-
chr11	2016405	2019105	H19_ENST00000414790.1	.	-	chr11	2016446	2019057	ENST00000446406.1	.	-
chr11	2016405	2019105	H19_ENST00000414790.1	.	-	chr11	2016464	2018255	ENST00000417089.1	.	-
chr11	2016405	2019105	H19_ENST00000414790.1	.	-	chr11	2016467	2019027	ENST00000411754.1	.	-
chr11	2016405	2019105	H19_ENST00000414790.1	.	-	chr11	2016467	2019045	ENST00000431095.1	.	-
chr11	2016405	2019105	H19_ENST00000414790.1	.	-	chr11	2016669	2017801	ENST00000436715.1	.	-
chr11	2016405	2019105	H19_ENST00000414790.1	.	-	chr11	2016913	2022700	ENST00000428066.1	.	-
chr11	2016405	2019105	H19_ENST00000414790.1	.	-	chr11	2016918	2017697	ENST00000447298.1	.	-
chr11	32457284	32461620	WT1_AS_NR_023920	.	+	chr11	32457064	32460253	ENST00000494911.1	.	+
chr11	32457284	32461620	WT1_AS_NR_023920	.	+	chr11	32457125	32462950	ENST00000395900.1	.	+
chr11	32457284	32461620	WT1_AS_NR_023920	.	+	chr11	32457322	32458597	ENST00000459866.1	.	+
chr11	32457284	32461620	WT1_AS_NR_023920	.	+	chr11	32459169	32459872	ENST00000478367.1	.	+
chr11	32457284	32461620	WT1_AS_NR_023920	.	+	chr11	32459475	32461618	ENST00000426618.2	.	+
chr11	32457284	32461620	WT1_AS_NR_023920	.	+	chr11	32459916	32460678	ENST00000442957.1	.	+
chr11	32457284	32461620	WT1_AS_NR_023920	.	+	chr11	32457347	32480315	ENST00000525436.1	.	+
chr11	62619459	62623360	SNHG1_NR_003098	.	-	chr11	62619724	62622960	ENST00000545440.1	.	-
chr11	62619459	62623360	SNHG1_NR_003098	.	-	chr11	62619730	62623386	ENST00000542112.1	.	-
chr11	62619459	62623360	SNHG1_NR_003098	.	-	chr11	62619762	62622960	ENST00000541615.1	.	-
chr11	62619459	62623360	SNHG1_NR_003098	.	-	chr11	62619769	62622960	ENST00000541578.1	.	-
chr11	62619459	62623360	SNHG1_NR_003098	.	-	chr11	62620081	62622939	ENST00000538266.1	.	-
chr11	62619459	62623360	SNHG1_NR_003098	.	-	chr11	62620221	62622932	ENST00000545688.1	.	-
chr11	62619459	62623360	SNHG1_NR_003098	.	-	chr11	62620304	62622960	ENST00000544550.1	.	-
chr11	62619459	62623360	SNHG1_NR_003098	.	-	chr11	62620544	62621814	ENST00000545920.1	.	-
chr11	62619459	62623360	SNHG1_NR_003098	.	-	chr11	62620545	62622960	ENST00000540865.1	.	-
chr11	62619459	62623360	SNHG1_NR_003098	.	-	chr11	62620826	62622960	ENST00000535689.1	.	-
chr11	62619459	62623360	SNHG1_NR_003098	.	-	chr11	62621019	62622951	ENST00000537024.1	.	-
chr11	62619459	62623360	SNHG1_NR_003098	.	-	chr11	62621045	62622646	ENST00000539303.1	.	-
chr11	62619459	62623360	SNHG1_NR_003098	.	-	chr11	62621552	62623284	ENST00000541416.1	.	-
chr11	62619459	62623360	SNHG1_NR_003098	.	-	chr11	62621840	62622960	ENST00000537965.1	.	-
chr11	62619459	62623360	SNHG1_NR_003098	.	-	chr11	62621914	62622960	ENST00000545308.1	.	-
chr11	62619459	62623360	SNHG1_NR_003098	.	-	chr11	62622152	62622960	ENST00000540904.1	.	-
chr11	62619459	62623360	SNHG1_NR_003098	.	-	chr11	62622154	62623230	ENST00000544983.1	.	-
chr11	62619459	62623360	SNHG1_NR_003098	.	-	chr11	62619460	62622708	ENST00000539921.1	.	-
chr11	62619459	62623360	SNHG1_NR_003098	.	-	chr11	62619460	62623218	ENST00000540725.1	.	-
chr11	62619459	62623360	SNHG1_NR_003098	.	-	chr11	62619460	62623339	ENST00000537925.1	.	-
chr11	62619459	62623360	SNHG1_NR_003098	.	-	chr11	62619460	62623353	ENST00000537068.1	.	-
chr11	62619459	62623360	SNHG1_NR_003098	.	-	chr11	62619461	62623357	ENST00000538654.1	.	-
chr11	62619459	62623360	SNHG1_NR_003098	.	-	chr11	62619463	62622932	ENST00000537869.1	.	-
chr11	62619459	62623360	SNHG1_NR_003098	.	-	chr11	62619492	62622708	ENST00000539975.1	.	-
chr11	62619459	62623360	SNHG1_NR_003098	.	-	chr11	62619520	62621168	ENST00000535076.1	.	-
chr11	65190268	65213011	NEAT1_ENST00000501122.2	.	+	chr11	65190245	65192232	ENST00000499732.1	.	+
chr11	65190268	65213011	NEAT1_ENST00000501122.2	.	+	chr11	65190269	65213011	ENST00000501122.2	.	+
chr11	65193525	65194002	TNCRNA	.	+	chr11	65190269	65213011	ENST00000501122.2	.	+
chr11	65265232	65273940	MALAT1_ENST00000534336.1	.	+	chr11	65266516	65271100	ENST00000544868.1	.	+
chr11	65265232	65273940	MALAT1_ENST00000534336.1	.	+	chr11	65269807	65271080	ENST00000508832.1	.	+
chr11	65265232	65273940	MALAT1_ENST00000534336.1	.	+	chr11	65265233	65273940	ENST00000534336.1	.	+
chr11	65273587	65273645	mascRNA	.	+	chr11	65265233	65273940	ENST00000534336.1	.	+
chr12	54356091	54368740	HOTAIR_ENST00000424518.1	.	-	chr12	54357586	54360414	ENST00000425595.1	.	-
chr12	54356091	54368740	HOTAIR_ENST00000424518.1	.	-	chr12	54357685	54361139	ENST00000453875.1	.	-
chr12	54356091	54368740	HOTAIR_ENST00000424518.1	.	-	chr12	54356092	54368740	ENST00000424518.1	.	-
chr12	54356091	54368740	HOTAIR_ENST00000424518.1	.	-	chr12	54357533	54368731	ENST00000455246.1	.	-
chr12	54356091	54368740	HOTAIR_ENST00000424518.1	.	-	chr12	54357869	54362698	ENST00000439545.1	.	-
chr12	68383224	68415107	TMEVPG1_ENST00000538665.1	.	+	chr12	68383225	68415107	ENST00000538665.1	.	+
chr12	68383224	68415107	TMEVPG1_ENST00000538665.1	.	+	chr12	68383236	68414111	ENST00000541715.1	.	+
chr12	68383224	68415107	TMEVPG1_ENST00000538665.1	.	+	chr12	68383309	68628466	ENST00000536914.1	.	+
chr13	70681344	70713885	SCA8_NR_002717	.	+	chr13	70681345	70704974	ENST00000414504.1	.	+
chr13	70681344	70713885	SCA8_NR_002717	.	+	chr13	70682044	70705678	ENST00000424524.1	.	+
chr14	57279900	57397551	OTX2OS1_ENST00000534909.2	.	+	chr14	57279901	57397548	ENST00000534909.1	.	+
chr14	96343108	96391908	MEGAMIND_LOC100507043_NR_038861	.	+	chr14	96342729	96391899	ENST00000504119.1	.	+
chr14	96343108	96391908	MEGAMIND_LOC100507043_NR_038861	.	+	chr14	96343153	96391899	ENST00000503525.1	.	+
chr14	101292444	101327360	MEG3_NR_003530	.	+	chr14	101292470	101299643	ENST00000452120.1	.	+
chr14	101292444	101327360	MEG3_NR_003530	.	+	chr14	101293748	101295643	ENST00000455286.1	.	+
chr14	101292444	101327360	MEG3_NR_003530	.	+	chr14	101292455	101311828	ENST00000520714.1	.	+
chr14	101292444	101327360	MEG3_NR_003530	.	+	chr14	101292455	101313375	ENST00000523671.1	.	+
chr14	101292444	101327360	MEG3_NR_003530	.	+	chr14	101292456	101313634	ENST00000522771.1	.	+
chr14	101292444	101327360	MEG3_NR_003530	.	+	chr14	101292463	101313627	ENST00000424076.2	.	+
chr14	101292444	101327360	MEG3_NR_003530	.	+	chr14	101295948	101311855	ENST00000452514.2	.	+
chr14	101292444	101327360	MEG3_NR_003530	.	+	chr14	101298401	101302560	ENST00000521812.1	.	+
chr14	101292444	101327360	MEG3_NR_003530	.	+	chr14	101299615	101313638	ENST00000455531.1	.	+
chr14	101292444	101327360	MEG3_NR_003530	.	+	chr14	101302143	101311870	ENST00000520069.1	.	+
chr14	101536247	101539271	MEG9_ENST00000429368.1	.	+	chr14	101536248	101539271	ENST00000429368.1	.	+
chr14	101536247	101539271	MEG9_ENST00000429368.1	.	+	chr14	101536824	101539271	ENST00000444846.1	.	+
chr14	101536247	101539271	MEG9_ENST00000429368.1	.	+	chr14	101538144	101538895	ENST00000452349.1	.	+
chr15	41576202	41598732	Cyrano_ENST00000500949.2	.	+	chr15	41576203	41594168	ENST00000500949.1	.	+
chr15	41576202	41598732	Cyrano_ENST00000500949.2	.	+	chr15	41576230	41601901	ENST00000501665.1	.	+
chr19	15939756	15947131	UCA1_NR_015379	.	+	chr19	15939757	15947130	ENST00000397381.3	.	+
chr19	15939756	15947131	UCA1_NR_015379	.	+	chr19	15050246	16748905	ENST00000499938.2	.	+
chr2	45148215	45166338	SIX3OS_ENST00000437916.2	.	-	chr2	45157003	45162790	ENST00000430847.1	.	-
chr2	45148215	45166338	SIX3OS_ENST00000437916.2	.	-	chr2	45158316	45162578	ENST00000444871.1	.	-
chr2	45148215	45166338	SIX3OS_ENST00000437916.2	.	-	chr2	45150486	45166338	ENST00000437916.1	.	-
chr2	47562453	47562653	BC200	.	+	chr2	47558199	47571656	ENST00000418539.1	.	+
chr2	145275981	145278683	ZEB2NAT	.	+	chr2	145277181	145278466	ENST00000428623.1	.	+
chr2	145275981	145278683	ZEB2NAT	.	+	chr2	145277421	145278445	ENST00000421083.1	.	+
chr2	145275981	145278683	ZEB2NAT	.	+	chr2	145275982	145278683	ENST00000427278.2	.	+
chr2	193614570	193641625	PCGEM1_ENST00000454040.1	.	+	chr2	193614571	193641625	ENST00000454040.1	.	+
chr3	4790875	4793274	EGO_ENST00000414938.1	.	-	chr3	4790876	4793274	ENST00000414938.1	.	-
chr3	116428625	116435878	LOC285194_ENST00000477539.1	.	+	chr3	116428626	116435878	ENST00000477539.1	.	+
chr3	116428625	116435878	LOC285194_ENST00000477539.1	.	+	chr3	116428671	116431318	ENST00000496154.1	.	+
chr3	116428625	116435878	LOC285194_ENST00000477539.1	.	+	chr3	116428680	116435282	ENST00000466856.1	.	+
chr3	116428625	116435878	LOC285194_ENST00000477539.1	.	+	chr3	116428816	116435278	ENST00000466156.1	.	+
chr3	116428625	116435878	LOC285194_ENST00000477539.1	.	+	chr3	116428816	116435278	ENST00000496242.1	.	+
chr3	116428625	116435878	LOC285194_ENST00000477539.1	.	+	chr3	116428626	116442428	ENST00000477805.1	.	+
chr3	180774467	181457813	SOX2OT_ENST00000493521.1	.	+	chr3	181417382	181417888	ENST00000490005.1	.	+
chr3	180774467	181457813	SOX2OT_ENST00000493521.1	.	+	chr3	181281244	181348678	ENST00000497122.1	.	+
chr3	180774467	181457813	SOX2OT_ENST00000493521.1	.	+	chr3	181281498	181389529	ENST00000472856.1	.	+
chr3	180774467	181457813	SOX2OT_ENST00000493521.1	.	+	chr3	181417281	181457867	ENST00000477928.1	.	+
chr3	180774467	181457813	SOX2OT_ENST00000493521.1	.	+	chr3	181417284	181457786	ENST00000466034.1	.	+
chr3	180774467	181457813	SOX2OT_ENST00000493521.1	.	+	chr3	180707558	180775032	ENST00000487240.1	.	+
chr3	180774467	181457813	SOX2OT_ENST00000493521.1	.	+	chr3	180721562	180893607	ENST00000461063.1	.	+
chr3	180774467	181457813	SOX2OT_ENST00000493521.1	.	+	chr3	180892813	181281643	ENST00000493116.1	.	+
chr3	180774467	181457813	SOX2OT_ENST00000493521.1	.	+	chr3	180774468	181457813	ENST00000493521.1	.	+
chr3	180774467	181457813	SOX2OT_ENST00000493521.1	.	+	chr3	180774473	181417572	ENST00000460739.1	.	+
chr3	180774467	181457813	SOX2OT_ENST00000493521.1	.	+	chr3	180892932	181457445	ENST00000469278.1	.	+
chr3	180774467	181457813	SOX2OT_ENST00000493521.1	.	+	chr3	181281509	181460261	ENST00000498731.1	.	+
chr3	180774467	181457813	SOX2OT_ENST00000493521.1	.	+	chr3	181328122	181457481	ENST00000476964.1	.	+
chr3	180774467	181457813	SOX2OT_ENST00000493521.1	.	+	chr3	181328151	181459018	ENST00000492337.1	.	+
chr3	180774467	181457813	SOX2OT_ENST00000493521.1	.	+	chr3	181328312	181457661	ENST00000491282.1	.	+
chr3	180774467	181457813	SOX2OT_ENST00000493521.1	.	+	chr3	181328317	181508734	ENST00000498226.1	.	+
chr3	180774467	181457813	SOX2OT_ENST00000493521.1	.	+	chr3	181328329	181417668	ENST00000485035.1	.	+
chr3	180774467	181457813	SOX2OT_ENST00000493521.1	.	+	chr3	181328397	181428083	ENST00000476125.1	.	+
chr5	87686218	87732860	AK082072_linc_POLR3G_8	.	+	chr5	87722512	87732183	ENST00000513694.1	.	+
chr5	87686218	87732860	AK082072_linc_POLR3G_8	.	+	chr5	87688012	87713308	ENST00000508015.1	.	+
chr5	87686218	87732860	AK082072_linc_POLR3G_8	.	+	chr5	87564733	87732502	ENST00000504922.1	.	+
chr5	87686218	87732860	AK082072_linc_POLR3G_8	.	+	chr5	87564755	87732501	ENST00000501869.2	.	+
chr5	87686218	87732860	AK082072_linc_POLR3G_8	.	+	chr5	87564841	87732491	ENST00000501715.2	.	+
chr5	87686218	87732860	AK082072_linc_POLR3G_8	.	+	chr5	87564859	87732419	ENST00000510087.1	.	+
chr6	8652369	8654079	HULC_ENST00000503668.1	.	+	chr6	8652370	8654079	ENST00000503668.1	.	+
chr6	8652369	8654079	HULC_ENST00000503668.1	.	+	chr6	8435926	8712519	ENST00000498984.1	.	+
chr6	86386724	86388451	SNHG5_NR_003038	.	-	chr6	86386725	86388420	ENST00000369605.4	.	-
chr6	86386724	86388451	SNHG5_NR_003038	.	-	chr6	86386800	86387711	ENST00000427501.1	.	-
chr6	86386724	86388451	SNHG5_NR_003038	.	-	chr6	86386800	86388370	ENST00000435947.1	.	-
chr6	86386724	86388451	SNHG5_NR_003038	.	-	chr6	86386802	86388238	ENST00000428833.1	.	-
chr6	86386724	86388451	SNHG5_NR_003038	.	-	chr6	86386802	86388291	ENST00000453754.1	.	-
chr6	86386724	86388451	SNHG5_NR_003038	.	-	chr6	86386802	86388440	ENST00000420199.1	.	-
chr6	86386724	86388451	SNHG5_NR_003038	.	-	chr6	86386802	86388451	ENST00000414002.1	.	-
chr6	86386724	86388451	SNHG5_NR_003038	.	-	chr6	86386846	86388451	ENST00000431043.1	.	-
chr6	86386724	86388451	SNHG5_NR_003038	.	-	chr6	86387047	86387917	ENST00000433843.1	.	-
chr6	86386724	86388451	SNHG5_NR_003038	.	-	chr6	86387187	86387977	ENST00000425170.1	.	-
chr7	27135712	27139773	HOTAIRM1_ENST00000434063.3	.	+	chr7	27135266	27135946	ENST00000495032.1	.	+
chr7	27135712	27139773	HOTAIRM1_ENST00000434063.3	.	+	chr7	27135713	27139773	ENST00000434063.3	.	+
chr7	27135712	27139773	HOTAIRM1_ENST00000434063.3	.	+	chr7	27135743	27139585	ENST00000429611.3	.	+
chr7	27135712	27139773	HOTAIRM1_ENST00000434063.3	.	+	chr7	27135852	27139585	ENST00000425358.2	.	+
chr7	27135712	27139773	HOTAIRM1_ENST00000434063.3	.	+	chr7	27138458	27139758	ENST00000428939.3	.	+
chr7	27161535	27168379	HOXA3AS_ENST00000517550.1	.	+	chr7	27153555	27161818	ENST00000522193.1	.	+
chr7	27161535	27168379	HOXA3AS_ENST00000517550.1	.	+	chr7	27154967	27162504	ENST00000517635.1	.	+
chr7	27161535	27168379	HOXA3AS_ENST00000517550.1	.	+	chr7	27154967	27162506	ENST00000468081.1	.	+
chr7	27161535	27168379	HOXA3AS_ENST00000517550.1	.	+	chr7	27155024	27161792	ENST00000518046.1	.	+
chr7	27161535	27168379	HOXA3AS_ENST00000517550.1	.	+	chr7	27155024	27161792	ENST00000519035.1	.	+
chr7	27161535	27168379	HOXA3AS_ENST00000517550.1	.	+	chr7	27160556	27162269	ENST00000523364.1	.	+
chr7	27161535	27168379	HOXA3AS_ENST00000517550.1	.	+	chr7	27160584	27161792	ENST00000520157.1	.	+
chr7	27161535	27168379	HOXA3AS_ENST00000517550.1	.	+	chr7	27162062	27163437	ENST00000517641.1	.	+
chr7	27161535	27168379	HOXA3AS_ENST00000517550.1	.	+	chr7	27162787	27163886	ENST00000524048.1	.	+
chr7	27161535	27168379	HOXA3AS_ENST00000517550.1	.	+	chr7	27147396	27161792	ENST00000518088.1	.	+
chr7	27161535	27168379	HOXA3AS_ENST00000517550.1	.	+	chr7	27161536	27168379	ENST00000517550.1	.	+
chr7	27161535	27168379	HOXA3AS_ENST00000517550.1	.	+	chr7	27161538	27168379	ENST00000518625.1	.	+
chr7	27161535	27168379	HOXA3AS_ENST00000517550.1	.	+	chr7	27162167	27173921	ENST00000521159.1	.	+
chr7	27161535	27168379	HOXA3AS_ENST00000517550.1	.	+	chr7	27162167	27173961	ENST00000523528.1	.	+
chr7	27161535	27168379	HOXA3AS_ENST00000517550.1	.	+	chr7	27162195	27168312	ENST00000521687.1	.	+
chr7	27186781	27195542	HOXA6AS_ENST00000518947.2	.	+	chr7	27186782	27193907	ENST00000480355.2	.	+
chr7	27186781	27195542	HOXA6AS_ENST00000518947.2	.	+	chr7	27186782	27193907	ENST00000518947.1	.	+
chr7	27186781	27195542	HOXA6AS_ENST00000518947.2	.	+	chr7	27187102	27192322	ENST00000517645.1	.	+
chr7	27186781	27195542	HOXA6AS_ENST00000518947.2	.	+	chr7	27187102	27192322	ENST00000521231.1	.	+
chr7	27186781	27195542	HOXA6AS_ENST00000518947.2	.	+	chr7	27189671	27192345	ENST00000518086.1	.	+
chr7	27186781	27195542	HOXA6AS_ENST00000518947.2	.	+	chr7	27189671	27192345	ENST00000524304.1	.	+
chr7	27186781	27195542	HOXA6AS_ENST00000518947.2	.	+	chr7	27169596	27192195	ENST00000518848.1	.	+
chr7	27186781	27195542	HOXA6AS_ENST00000518947.2	.	+	chr7	27179983	27192316	ENST00000521197.1	.	+
chr7	27186781	27195542	HOXA6AS_ENST00000518947.2	.	+	chr7	27179991	27192344	ENST00000522418.1	.	+
chr7	27224136	27228786	HOXA11AS_ENST00000520360.1	.	+	chr7	27224137	27228786	ENST00000520360.1	.	+
chr7	27224136	27228786	HOXA11AS_ENST00000520360.1	.	+	chr7	27224290	27228786	ENST00000522863.1	.	+
chr7	27224136	27228786	HOXA11AS_ENST00000520360.1	.	+	chr7	27225027	27228912	ENST00000522674.1	.	+
chr7	27224136	27228786	HOXA11AS_ENST00000520360.1	.	+	chr7	27225032	27228786	ENST00000517723.1	.	+
chr7	27224136	27228786	HOXA11AS_ENST00000520360.1	.	+	chr7	27225153	27226740	ENST00000520395.1	.	+
chr7	27224136	27228786	HOXA11AS_ENST00000520360.1	.	+	chr7	27227438	27228839	ENST00000479766.1	.	+
chr7	27240039	27246878	HOTTIP_ENST00000521028.2	.	+	chr7	27238194	27240855	ENST00000421733.1	.	+
chr7	27240039	27246878	HOTTIP_ENST00000521028.2	.	+	chr7	27238194	27240855	ENST00000525466.1	.	+
chr7	27240039	27246878	HOTTIP_ENST00000521028.2	.	+	chr7	27240056	27242441	ENST00000472494.1	.	+
chr7	27240039	27246878	HOTTIP_ENST00000521028.2	.	+	chr7	27241640	27246853	ENST00000522259.1	.	+
chr7	27240039	27246878	HOTTIP_ENST00000521028.2	.	+	chr7	27241649	27246878	ENST00000521028.1	.	+
chr7	96594838	96643377	EVF2_ENST00000430027.2	.	-	chr7	96635695	96637022	ENST00000513631.1	.	-
chr7	96594838	96643377	EVF2_ENST00000430027.2	.	-	chr7	96607780	96643337	ENST00000458352.1	.	-
chr7	96594838	96643377	EVF2_ENST00000430027.2	.	-	chr7	96608393	96641194	ENST00000437541.1	.	-
chr7	96594838	96643377	EVF2_ENST00000430027.2	.	-	chr7	96594839	96643377	ENST00000430027.2	.	-
chr7	96594838	96643377	EVF2_ENST00000430027.2	.	-	chr7	96596122	96633610	ENST00000431497.1	.	-
chr7	96594838	96643377	EVF2_ENST00000430027.2	.	-	chr7	96598048	96643376	ENST00000452769.1	.	-
chr7	96594838	96643377	EVF2_ENST00000430027.2	.	-	chr7	96598110	96643372	ENST00000437331.1	.	-
chr7	96594838	96643377	EVF2_ENST00000430027.2	.	-	chr7	96598386	96641194	ENST00000430404.1	.	-
chr7	116592500	116594388	ST7OS1_NR_002330	.	-	chr7	116592500	116594388	ENST00000456775.1	.	-
chr7	116712480	116785612	ST7OS2_ENST00000432541.1	.	-	chr7	116712126	116714778	ENST00000446784.1	.	-
chr7	116712480	116785612	ST7OS2_ENST00000432541.1	.	-	chr7	116785419	116786534	ENST00000433969.1	.	-
chr7	116712480	116785612	ST7OS2_ENST00000432541.1	.	-	chr7	116712126	116730834	ENST00000456577.1	.	-
chr7	116712480	116785612	ST7OS2_ENST00000432541.1	.	-	chr7	116712481	116785612	ENST00000432541.1	.	-
chr7	116712480	116785612	ST7OS2_ENST00000432541.1	.	-	chr7	116752346	116785614	ENST00000434993.1	.	-
chr7	116712480	116785612	ST7OS2_ENST00000432541.1	.	-	chr7	116752346	116785646	ENST00000442719.1	.	-
chr8	9757573	9760839	RNCR3_ENST00000519461.1	.	-	chr8	9757574	9758710	ENST00000518557.1	.	-
chr8	9757573	9760839	RNCR3_ENST00000519461.1	.	-	chr8	9757574	9760839	ENST00000519461.1	.	-
chr8	9757573	9760839	RNCR3_ENST00000519461.1	.	-	chr8	9757574	9760907	ENST00000517675.1	.	-
chr8	9757573	9760839	RNCR3_ENST00000519461.1	.	-	chr8	9760677	9761720	ENST00000521863.1	.	-
chr8	67833918	67837776	SNHG6_ENST00000520348.1	.	-	chr8	67833919	67837776	ENST00000520348.1	.	-
chr8	67833918	67837776	SNHG6_ENST00000520348.1	.	-	chr8	67834053	67837831	ENST00000520944.1	.	-
chr8	67833918	67837776	SNHG6_ENST00000520348.1	.	-	chr8	67834165	67837777	ENST00000499996.1	.	-
chr8	67833918	67837776	SNHG6_ENST00000520348.1	.	-	chr8	67834222	67837776	ENST00000521399.1	.	-
chr8	67833918	67837776	SNHG6_ENST00000520348.1	.	-	chr8	67834230	67837776	ENST00000502076.2	.	-
chr8	67833918	67837776	SNHG6_ENST00000520348.1	.	-	chr8	67834253	67838633	ENST00000520619.1	.	-
chr8	67833918	67837776	SNHG6_ENST00000520348.1	.	-	chr8	67834506	67837776	ENST00000521127.1	.	-
chr9	21994789	22121093	ANRIL_NR_003529	.	+	chr9	22046750	22118701	ENST00000421632.1	.	+
chr9	21994789	22121093	ANRIL_NR_003529	.	+	chr9	22049184	22077890	ENST00000455933.1	.	+
chr9	21994789	22121093	ANRIL_NR_003529	.	+	chr9	22113677	22121096	ENST00000422420.1	.	+
chr9	21994789	22121093	ANRIL_NR_003529	.	+	chr9	21994790	22121094	ENST00000428597.1	.	+
chr20	47894714	47905797	ZFAS1	.	+	chr20	47894715	47905797	ENST00000371743.3	.	+
chr20	47894714	47905797	ZFAS1	.	+	chr20	47894715	47905797	ENST00000417721.1	.	+
chr20	47894714	47905797	ZFAS1	.	+	chr20	47894715	47905797	ENST00000441722.1	.	+
chr20	47894714	47905797	ZFAS1	.	+	chr20	47894715	47905797	ENST00000450535.1	.	+
chr20	47894714	47905797	ZFAS1	.	+	chr20	47894808	47905797	ENST00000458653.1	.	+
chr20	47894714	47905797	ZFAS1	.	+	chr20	47895179	47905797	ENST00000326677.5	.	+
chr20	47894714	47905797	ZFAS1	.	+	chr20	47895179	47905797	ENST00000428008.1	.	+
chr20	57393972	57425958	NESPAS_NR_002785	.	-	chr20	57414837	57415899	ENST00000443966.1	.	-
chr20	57393972	57425958	NESPAS_NR_002785	.	-	chr20	57393974	57425958	ENST00000424094.1	.	-
chr20	61726844	61733671	HAR1B_NR_003245	.	-	chr20	61727150	61733631	ENST00000447910.1	.	-
chr20	61732643	61735737	HAR1A_NR_003244	.	+	chr20	61733557	61735738	ENST00000433161.1	.	+
chr22	27053335	27072438	GOMAFU_ENST00000423278.1	.	+	chr22	27053190	27061836	ENST00000439738.1	.	+
chr22	27053335	27072438	GOMAFU_ENST00000423278.1	.	+	chr22	27053220	27061733	ENST00000422403.1	.	+
chr22	27053335	27072438	GOMAFU_ENST00000423278.1	.	+	chr22	27053220	27062159	ENST00000436238.1	.	+
chr22	27053335	27072438	GOMAFU_ENST00000423278.1	.	+	chr22	27053231	27061779	ENST00000425476.1	.	+
chr22	27053335	27072438	GOMAFU_ENST00000423278.1	.	+	chr22	27053244	27061882	ENST00000455640.1	.	+
chr22	27053335	27072438	GOMAFU_ENST00000423278.1	.	+	chr22	27053244	27061913	ENST00000451141.1	.	+
chr22	27053335	27072438	GOMAFU_ENST00000423278.1	.	+	chr22	27053248	27061987	ENST00000452429.1	.	+
chr22	27053335	27072438	GOMAFU_ENST00000423278.1	.	+	chr22	27053422	27062144	ENST00000413665.1	.	+
chr22	27053335	27072438	GOMAFU_ENST00000423278.1	.	+	chr22	27053552	27061816	ENST00000458302.1	.	+
chr22	27053335	27072438	GOMAFU_ENST00000423278.1	.	+	chr22	27053553	27062002	ENST00000419237.1	.	+
chr22	27053335	27072438	GOMAFU_ENST00000423278.1	.	+	chr22	27053575	27061643	ENST00000449717.1	.	+
chr22	27053335	27072438	GOMAFU_ENST00000423278.1	.	+	chr22	27053578	27061757	ENST00000453023.1	.	+
chr22	27053335	27072438	GOMAFU_ENST00000423278.1	.	+	chr22	27042392	27061841	ENST00000421867.1	.	+
chr22	27053335	27072438	GOMAFU_ENST00000423278.1	.	+	chr22	27042604	27061603	ENST00000418918.1	.	+
chr22	27053335	27072438	GOMAFU_ENST00000423278.1	.	+	chr22	27043175	27061701	ENST00000440347.1	.	+
chr22	27053335	27072438	GOMAFU_ENST00000423278.1	.	+	chr22	27043188	27061873	ENST00000450203.1	.	+
chr22	27053335	27072438	GOMAFU_ENST00000423278.1	.	+	chr22	27043192	27061773	ENST00000430483.1	.	+
chr22	27053335	27072438	GOMAFU_ENST00000423278.1	.	+	chr22	27053336	27072438	ENST00000423278.1	.	+
chr22	27053335	27072438	GOMAFU_ENST00000423278.1	.	+	chr22	27053432	27072438	ENST00000421151.1	.	+
chr22	27053335	27072438	GOMAFU_ENST00000423278.1	.	+	chr22	27053484	27072438	ENST00000430080.1	.	+
chr22	27053335	27072438	GOMAFU_ENST00000423278.1	.	+	chr22	27053484	27072438	ENST00000456129.1	.	+
chr22	27053335	27072438	GOMAFU_ENST00000423278.1	.	+	chr22	27068730	27130418	ENST00000444388.1	.	+
chr22	27053335	27072438	GOMAFU_ENST00000423278.1	.	+	chr22	27068754	27113422	ENST00000449017.1	.	+
chr22	27053335	27072438	GOMAFU_ENST00000423278.1	.	+	chr22	27068819	27114355	ENST00000421253.1	.	+
chr22	27053335	27072438	GOMAFU_ENST00000423278.1	.	+	chr22	27068740	27172811	ENST00000450963.1	.	+
chr22	27053335	27072438	GOMAFU_ENST00000423278.1	.	+	chr22	27068768	27174598	ENST00000435162.1	.	+
chr22	27053335	27072438	GOMAFU_ENST00000423278.1	.	+	chr22	27068768	27176170	ENST00000437071.1	.	+
chr22	27053335	27072438	GOMAFU_ENST00000423278.1	.	+	chr22	27068777	27172845	ENST00000440816.1	.	+
chr22	31365633	31375380	TUG1	.	+	chr22	31365643	31374831	ENST00000521091.1	.	+
chr22	31365633	31375380	TUG1	.	+	chr22	31366663	31372049	ENST00000540687.1	.	+
chr22	31365633	31375380	TUG1	.	+	chr22	31367353	31374831	ENST00000519077.1	.	+
chrX	73040490	73072588	XIST_ENST00000429829.1	.	-	chrX	73040486	73046290	ENST00000434839.1	.	-
chrX	73040490	73072588	XIST_ENST00000429829.1	.	-	chrX	73040488	73046641	ENST00000421322.1	.	-
chrX	73040490	73072588	XIST_ENST00000429829.1	.	-	chrX	73040491	73046136	ENST00000417942.1	.	-
chrX	73040490	73072588	XIST_ENST00000429829.1	.	-	chrX	73040491	73046179	ENST00000416330.1	.	-
chrX	73040490	73072588	XIST_ENST00000429829.1	.	-	chrX	73046289	73047729	ENST00000540864.1	.	-
chrX	73040490	73072588	XIST_ENST00000429829.1	.	-	chrX	73047544	73049302	ENST00000433732.1	.	-
chrX	73040490	73072588	XIST_ENST00000429829.1	.	-	chrX	73047636	73051045	ENST00000445814.1	.	-
chrX	73040490	73072588	XIST_ENST00000429829.1	.	-	chrX	73040491	73072588	ENST00000429829.1	.	-
chrX	73164158	73290217	JPX_NR_024582	.	+	chrX	73164181	73164781	ENST00000453317.1	.	+
chrX	73164158	73290217	JPX_NR_024582	.	+	chrX	73164202	73167265	ENST00000415215.1	.	+
chrX	73164158	73290217	JPX_NR_024582	.	+	chrX	73168808	73169393	ENST00000444482.1	.	+
chrX	73164158	73290217	JPX_NR_024582	.	+	chrX	73164177	73220326	ENST00000414209.1	.	+