[2022-10-20 23:30:28,995] multiqc [DEBUG ] No MultiQC config found: /nfs/software/as/el7.2/EasyBuild/CRG/software/MultiQC/1.9-foss-2020a-Python-3.8.2/lib/python3.8/site-packages/multiqc_config.yaml [2022-10-20 23:30:28,995] multiqc [DEBUG ] No MultiQC config found: /users/rg/gasole/.multiqc_config.yaml [2022-10-20 23:30:28,995] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2022-10-20 23:30:28,995] multiqc [DEBUG ] Command used: /software/as/el7.2/EasyBuild/CRG/software/MultiQC/1.9-foss-2020a-Python-3.8.2/bin/multiqc C1-MGI_Log.final.out C2-MGI_Log.final.out C3-MGI_Log.final.out C6-UoB_Log.final.out C7-UoB_Log.final.out C8-UoB_Log.final.out D1-MGI_Log.final.out D2-MGI_Log.final.out D3-MGI_Log.final.out D6-UoB_Log.final.out D7-UoB_Log.final.out D8-UoB_Log.final.out DF1-MGI_Log.final.out DF2-MGI_Log.final.out DF3-MGI_Log.final.out DF4-UoB_Log.final.out DF5-UoB_Log.final.out DF6-UoB_Log.final.out DM1-MGI_Log.final.out DM2-MGI_Log.final.out DM3-MGI_Log.final.out DM4-UoB_Log.final.out DM5-UoB_Log.final.out DM6-UoB_Log.final.out X1-MGI_Log.final.out X2-MGI_Log.final.out X3-MGI_Log.final.out X7-UoB_Log.final.out X8-UoB_Log.final.out X9-UoB_Log.final.out [2022-10-20 23:30:29,294] multiqc [WARNING] MultiQC Version v1.13 now available! [2022-10-20 23:30:29,296] multiqc [INFO ] This is MultiQC v1.9 [2022-10-20 23:30:29,296] multiqc [DEBUG ] Command : /software/as/el7.2/EasyBuild/CRG/software/MultiQC/1.9-foss-2020a-Python-3.8.2/bin/multiqc C1-MGI_Log.final.out C2-MGI_Log.final.out C3-MGI_Log.final.out C6-UoB_Log.final.out C7-UoB_Log.final.out C8-UoB_Log.final.out D1-MGI_Log.final.out D2-MGI_Log.final.out D3-MGI_Log.final.out D6-UoB_Log.final.out D7-UoB_Log.final.out D8-UoB_Log.final.out DF1-MGI_Log.final.out DF2-MGI_Log.final.out DF3-MGI_Log.final.out DF4-UoB_Log.final.out DF5-UoB_Log.final.out DF6-UoB_Log.final.out DM1-MGI_Log.final.out DM2-MGI_Log.final.out DM3-MGI_Log.final.out DM4-UoB_Log.final.out DM5-UoB_Log.final.out DM6-UoB_Log.final.out X1-MGI_Log.final.out X2-MGI_Log.final.out X3-MGI_Log.final.out X7-UoB_Log.final.out X8-UoB_Log.final.out X9-UoB_Log.final.out [2022-10-20 23:30:29,296] multiqc [DEBUG ] Working dir : /nfs/users/rg/gasole/public_docs/grape_MGI_comparison/multiqc_grape_MGI [2022-10-20 23:30:29,296] multiqc [INFO ] Template : default [2022-10-20 23:30:29,296] multiqc [DEBUG ] Running Python 3.8.2 (default, Jul 27 2020, 18:38:33) [GCC 9.3.0] [2022-10-20 23:30:29,297] multiqc [INFO ] Searching : /nfs/users/rg/gasole/public_docs/grape_MGI_comparison/multiqc_grape_MGI/C1-MGI_Log.final.out [2022-10-20 23:30:29,297] multiqc [INFO ] Searching : /nfs/users/rg/gasole/public_docs/grape_MGI_comparison/multiqc_grape_MGI/C2-MGI_Log.final.out [2022-10-20 23:30:29,297] multiqc [INFO ] Searching : /nfs/users/rg/gasole/public_docs/grape_MGI_comparison/multiqc_grape_MGI/C3-MGI_Log.final.out [2022-10-20 23:30:29,297] multiqc [INFO ] Searching : /nfs/users/rg/gasole/public_docs/grape_MGI_comparison/multiqc_grape_MGI/C6-UoB_Log.final.out [2022-10-20 23:30:29,298] multiqc [INFO ] Searching : /nfs/users/rg/gasole/public_docs/grape_MGI_comparison/multiqc_grape_MGI/C7-UoB_Log.final.out [2022-10-20 23:30:29,298] multiqc [INFO ] Searching : /nfs/users/rg/gasole/public_docs/grape_MGI_comparison/multiqc_grape_MGI/C8-UoB_Log.final.out [2022-10-20 23:30:29,298] multiqc [INFO ] Searching : /nfs/users/rg/gasole/public_docs/grape_MGI_comparison/multiqc_grape_MGI/D1-MGI_Log.final.out [2022-10-20 23:30:29,299] multiqc [INFO ] Searching : /nfs/users/rg/gasole/public_docs/grape_MGI_comparison/multiqc_grape_MGI/D2-MGI_Log.final.out [2022-10-20 23:30:29,299] multiqc [INFO ] Searching : /nfs/users/rg/gasole/public_docs/grape_MGI_comparison/multiqc_grape_MGI/D3-MGI_Log.final.out [2022-10-20 23:30:29,299] multiqc [INFO ] Searching : /nfs/users/rg/gasole/public_docs/grape_MGI_comparison/multiqc_grape_MGI/D6-UoB_Log.final.out [2022-10-20 23:30:29,300] multiqc [INFO ] Searching : /nfs/users/rg/gasole/public_docs/grape_MGI_comparison/multiqc_grape_MGI/D7-UoB_Log.final.out [2022-10-20 23:30:29,300] multiqc [INFO ] Searching : /nfs/users/rg/gasole/public_docs/grape_MGI_comparison/multiqc_grape_MGI/D8-UoB_Log.final.out [2022-10-20 23:30:29,300] multiqc [INFO ] Searching : /nfs/users/rg/gasole/public_docs/grape_MGI_comparison/multiqc_grape_MGI/DF1-MGI_Log.final.out [2022-10-20 23:30:29,300] multiqc [INFO ] Searching : /nfs/users/rg/gasole/public_docs/grape_MGI_comparison/multiqc_grape_MGI/DF2-MGI_Log.final.out [2022-10-20 23:30:29,301] multiqc [INFO ] Searching : /nfs/users/rg/gasole/public_docs/grape_MGI_comparison/multiqc_grape_MGI/DF3-MGI_Log.final.out [2022-10-20 23:30:29,301] multiqc [INFO ] Searching : /nfs/users/rg/gasole/public_docs/grape_MGI_comparison/multiqc_grape_MGI/DF4-UoB_Log.final.out [2022-10-20 23:30:29,301] multiqc [INFO ] Searching : /nfs/users/rg/gasole/public_docs/grape_MGI_comparison/multiqc_grape_MGI/DF5-UoB_Log.final.out [2022-10-20 23:30:29,301] multiqc [INFO ] Searching : /nfs/users/rg/gasole/public_docs/grape_MGI_comparison/multiqc_grape_MGI/DF6-UoB_Log.final.out [2022-10-20 23:30:29,302] multiqc [INFO ] Searching : /nfs/users/rg/gasole/public_docs/grape_MGI_comparison/multiqc_grape_MGI/DM1-MGI_Log.final.out [2022-10-20 23:30:29,302] multiqc [INFO ] Searching : /nfs/users/rg/gasole/public_docs/grape_MGI_comparison/multiqc_grape_MGI/DM2-MGI_Log.final.out [2022-10-20 23:30:29,302] multiqc [INFO ] Searching : /nfs/users/rg/gasole/public_docs/grape_MGI_comparison/multiqc_grape_MGI/DM3-MGI_Log.final.out [2022-10-20 23:30:29,302] multiqc [INFO ] Searching : /nfs/users/rg/gasole/public_docs/grape_MGI_comparison/multiqc_grape_MGI/DM4-UoB_Log.final.out [2022-10-20 23:30:29,302] multiqc [INFO ] Searching : /nfs/users/rg/gasole/public_docs/grape_MGI_comparison/multiqc_grape_MGI/DM5-UoB_Log.final.out [2022-10-20 23:30:29,303] multiqc [INFO ] Searching : /nfs/users/rg/gasole/public_docs/grape_MGI_comparison/multiqc_grape_MGI/DM6-UoB_Log.final.out [2022-10-20 23:30:29,303] multiqc [INFO ] Searching : /nfs/users/rg/gasole/public_docs/grape_MGI_comparison/multiqc_grape_MGI/X1-MGI_Log.final.out [2022-10-20 23:30:29,303] multiqc [INFO ] Searching : /nfs/users/rg/gasole/public_docs/grape_MGI_comparison/multiqc_grape_MGI/X2-MGI_Log.final.out [2022-10-20 23:30:29,303] multiqc [INFO ] Searching : /nfs/users/rg/gasole/public_docs/grape_MGI_comparison/multiqc_grape_MGI/X3-MGI_Log.final.out [2022-10-20 23:30:29,304] multiqc [INFO ] Searching : /nfs/users/rg/gasole/public_docs/grape_MGI_comparison/multiqc_grape_MGI/X7-UoB_Log.final.out [2022-10-20 23:30:29,304] multiqc [INFO ] Searching : /nfs/users/rg/gasole/public_docs/grape_MGI_comparison/multiqc_grape_MGI/X8-UoB_Log.final.out [2022-10-20 23:30:29,304] multiqc [INFO ] Searching : /nfs/users/rg/gasole/public_docs/grape_MGI_comparison/multiqc_grape_MGI/X9-UoB_Log.final.out [2022-10-20 23:30:29,306] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2022-10-20 23:30:29,307] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpzxgf0wte [2022-10-20 23:30:30,462] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.2.1 [2022-10-20 23:30:30,465] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.2.1 [2022-10-20 23:30:30,471] multiqc [DEBUG ] No samples found: custom_content [2022-10-20 23:30:30,484] multiqc [DEBUG ] No samples found: conpair [2022-10-20 23:30:30,497] multiqc [DEBUG ] No samples found: peddy [2022-10-20 23:30:30,510] multiqc [DEBUG ] No samples found: somalier [2022-10-20 23:30:30,521] multiqc [DEBUG ] No samples found: methylQA [2022-10-20 23:30:30,540] multiqc [DEBUG ] No samples found: mosdepth [2022-10-20 23:30:30,553] multiqc [DEBUG ] No samples found: phantompeakqualtools [2022-10-20 23:30:30,563] multiqc [DEBUG ] No samples found: qualimap [2022-10-20 23:30:30,578] multiqc [DEBUG ] No samples found: preseq [2022-10-20 23:30:30,592] multiqc [DEBUG ] No samples found: quast [2022-10-20 23:30:30,606] multiqc [DEBUG ] No samples found: qorts [2022-10-20 23:30:30,619] multiqc [DEBUG ] No samples found: rna_seqc [2022-10-20 23:30:30,633] multiqc [DEBUG ] No samples found: rockhopper [2022-10-20 23:30:30,647] multiqc [DEBUG ] No samples found: rsem [2022-10-20 23:30:30,684] multiqc [DEBUG ] No samples found: rseqc [2022-10-20 23:30:30,698] multiqc [DEBUG ] No samples found: busco [2022-10-20 23:30:30,712] multiqc [DEBUG ] No samples found: goleft_indexcov [2022-10-20 23:30:30,725] multiqc [DEBUG ] No samples found: disambiguate [2022-10-20 23:30:30,739] multiqc [DEBUG ] No samples found: supernova [2022-10-20 23:30:30,775] multiqc [DEBUG ] No samples found: deeptools [2022-10-20 23:30:30,789] multiqc [DEBUG ] No samples found: sargasso [2022-10-20 23:30:30,802] multiqc [DEBUG ] No samples found: verifybamid [2022-10-20 23:30:30,815] multiqc [DEBUG ] No samples found: mirtrace [2022-10-20 23:30:30,828] multiqc [DEBUG ] No samples found: happy [2022-10-20 23:30:30,841] multiqc [DEBUG ] No samples found: mirtop [2022-10-20 23:30:30,860] multiqc [DEBUG ] No samples found: homer [2022-10-20 23:30:30,872] multiqc [DEBUG ] No samples found: macs2 [2022-10-20 23:30:30,885] multiqc [DEBUG ] No samples found: theta2 [2022-10-20 23:30:30,898] multiqc [DEBUG ] No samples found: snpeff [2022-10-20 23:30:30,916] multiqc [DEBUG ] No samples found: gatk [2022-10-20 23:30:30,928] multiqc [DEBUG ] No samples found: htseq [2022-10-20 23:30:30,943] multiqc [DEBUG ] No samples found: bcftools [2022-10-20 23:30:30,956] multiqc [DEBUG ] No samples found: featureCounts [2022-10-20 23:30:30,972] multiqc [DEBUG ] No samples found: fgbio [2022-10-20 23:30:31,001] multiqc [DEBUG ] No samples found: dragen [2022-10-20 23:30:31,017] multiqc [DEBUG ] No samples found: dedup [2022-10-20 23:30:31,029] multiqc [DEBUG ] No samples found: damageprofiler [2022-10-20 23:30:31,085] multiqc [DEBUG ] No samples found: biobambam2 [2022-10-20 23:30:31,097] multiqc [DEBUG ] No samples found: mtnucratio [2022-10-20 23:30:31,104] multiqc [DEBUG ] No samples found: picard [2022-10-20 23:30:31,115] multiqc [DEBUG ] No samples found: prokka [2022-10-20 23:30:31,125] multiqc [DEBUG ] No samples found: samblaster [2022-10-20 23:30:31,144] multiqc [DEBUG ] No samples found: samtools [2022-10-20 23:30:31,155] multiqc [DEBUG ] No samples found: sexdeterrmine [2022-10-20 23:30:31,168] multiqc [DEBUG ] No samples found: bamtools [2022-10-20 23:30:31,179] multiqc [DEBUG ] No samples found: jellyfish [2022-10-20 23:30:31,198] multiqc [DEBUG ] No samples found: vcftools [2022-10-20 23:30:31,210] multiqc [DEBUG ] No samples found: longranger [2022-10-20 23:30:31,221] multiqc [DEBUG ] No samples found: stacks [2022-10-20 23:30:31,233] multiqc [DEBUG ] No samples found: varscan2 [2022-10-20 23:30:31,269] multiqc [DEBUG ] No samples found: bbmap [2022-10-20 23:30:31,281] multiqc [DEBUG ] No samples found: bismark [2022-10-20 23:30:31,293] multiqc [DEBUG ] No samples found: biscuit [2022-10-20 23:30:31,305] multiqc [DEBUG ] No samples found: hicexplorer [2022-10-20 23:30:31,317] multiqc [DEBUG ] No samples found: hicup [2022-10-20 23:30:31,329] multiqc [DEBUG ] No samples found: hicpro [2022-10-20 23:30:31,340] multiqc [DEBUG ] No samples found: salmon [2022-10-20 23:30:31,352] multiqc [DEBUG ] No samples found: kallisto [2022-10-20 23:30:31,363] multiqc [DEBUG ] No samples found: slamdunk [2022-10-20 23:30:31,575] multiqc.modules.star.star [INFO ] Found 30 reports [2022-10-20 23:30:31,602] multiqc [DEBUG ] No samples found: hisat2 [2022-10-20 23:30:31,617] multiqc [DEBUG ] No samples found: tophat [2022-10-20 23:30:31,633] multiqc [DEBUG ] No samples found: bowtie2 [2022-10-20 23:30:31,647] multiqc [DEBUG ] No samples found: bowtie1 [2022-10-20 23:30:31,661] multiqc [DEBUG ] No samples found: snpsplit [2022-10-20 23:30:31,674] multiqc [DEBUG ] No samples found: kat [2022-10-20 23:30:31,688] multiqc [DEBUG ] No samples found: leehom [2022-10-20 23:30:31,702] multiqc [DEBUG ] No samples found: adapterRemoval [2022-10-20 23:30:31,715] multiqc [DEBUG ] No samples found: clipandmerge [2022-10-20 23:30:31,729] multiqc [DEBUG ] No samples found: cutadapt [2022-10-20 23:30:31,743] multiqc [DEBUG ] No samples found: flexbar [2022-10-20 23:30:31,757] multiqc [DEBUG ] No samples found: kaiju [2022-10-20 23:30:31,770] multiqc [DEBUG ] No samples found: kraken [2022-10-20 23:30:31,784] multiqc [DEBUG ] No samples found: malt [2022-10-20 23:30:31,797] multiqc [DEBUG ] No samples found: trimmomatic [2022-10-20 23:30:31,811] multiqc [DEBUG ] No samples found: sickle [2022-10-20 23:30:31,824] multiqc [DEBUG ] No samples found: skewer [2022-10-20 23:30:31,838] multiqc [DEBUG ] No samples found: sortmerna [2022-10-20 23:30:31,852] multiqc [DEBUG ] No samples found: biobloomtools [2022-10-20 23:30:31,865] multiqc [DEBUG ] No samples found: fastq_screen [2022-10-20 23:30:31,879] multiqc [DEBUG ] No samples found: afterqc [2022-10-20 23:30:31,892] multiqc [DEBUG ] No samples found: fastp [2022-10-20 23:30:31,906] multiqc [DEBUG ] No samples found: fastqc [2022-10-20 23:30:31,919] multiqc [DEBUG ] No samples found: pycoqc [2022-10-20 23:30:31,934] multiqc [DEBUG ] No samples found: minionqc [2022-10-20 23:30:31,947] multiqc [DEBUG ] No samples found: multivcfanalyzer [2022-10-20 23:30:31,960] multiqc [DEBUG ] No samples found: clusterflow [2022-10-20 23:30:31,973] multiqc [DEBUG ] No samples found: bcl2fastq [2022-10-20 23:30:31,985] multiqc [DEBUG ] No samples found: interop [2022-10-20 23:30:31,998] multiqc [DEBUG ] No samples found: ivar [2022-10-20 23:30:32,012] multiqc [DEBUG ] No samples found: flash [2022-10-20 23:30:32,024] multiqc [DEBUG ] No samples found: seqyclean [2022-10-20 23:30:32,064] multiqc [INFO ] Compressing plot data [2022-10-20 23:30:32,087] multiqc [INFO ] Report : multiqc_report.html [2022-10-20 23:30:32,088] multiqc [INFO ] Data : multiqc_data [2022-10-20 23:30:32,088] multiqc [DEBUG ] Moving data file from '/tmp/tmpzxgf0wte/multiqc_data' to '/nfs/users/rg/gasole/public_docs/grape_MGI_comparison/multiqc_grape_MGI/multiqc_data' [2022-10-20 23:30:32,474] multiqc [INFO ] MultiQC complete