DF3-MGI-2_parsed.fq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	DF3-MGI-2_parsed.fq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9777183
Sequences flagged as poor quality	0
Sequence length	100
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGACATGGCTACGATGGGGGCGGTCGAGTGCCTCACAGTGTATCAAGGGT	33073	0.33826716754713504	No Hit
CGACATGGCTACGATGGGGTTAGTTTTTATTTATTAATTTTTATTATTTT	22531	0.23044469966451483	No Hit
CGACATGGCTACGATGGGAGTTCTGGATCAAGCAGAGTAAAACTATCCAA	18520	0.1894206132788964	No Hit
CGACATGGCTACGATGGGGAGTTCTGGATCAAGCAGAGTAAAACTATCCA	17556	0.17956092260930373	No Hit
CGACATGGCTACGATGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	12254	0.12533262392654407	No Hit
CGACATGGCTACGATGTGAACCACAGGAAGCGCAAGTCCGGCACTGTCGG	11630	0.11895041751801107	No Hit
CGACATGGCTACGATGGGAGTACTCAAGTCATCGTTCTCTAGTTCAGAGT	11047	0.11298755479978231	No Hit
CGACATGGCTACGATGGGAATTGAATTTGCTAAGTCAATCATCTACAAAA	9992	0.10219712569561192	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CATGGCT	263300	90.47634	4
ACATGGC	263060	90.3284	3
CGACATG	263680	89.83438	1
GACATGG	266310	89.22781	2
ATGGCTA	268070	88.79804	5
GCTACGA	272195	86.423225	8
TGGCTAC	277380	85.863365	6
GGCTACG	277325	85.77362	7
CTACGAT	271625	85.45219	9
TACGATG	265385	42.857605	10-11
ACGATGG	262390	42.76106	10-11
GATGGGG	161005	38.02357	12-13
CGATGGG	290300	38.018517	12-13
GATGGGA	89760	37.852386	12-13
ATGGGGG	32845	37.605724	14-15
ATGGGGA	74615	37.116863	14-15
TGGGGAA	24025	36.259937	14-15
ATGGGGC	23790	35.659943	14-15
TGGGGAG	22565	35.471306	14-15
GGGGAGT	14205	34.75783	16-17