DF3-MGI-1_parsed.fq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	DF3-MGI-1_parsed.fq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	11257350
Sequences flagged as poor quality	0
Sequence length	100
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGACATGGCTACGATGGGGGCGGTCGAGTGCCTCACAGTGTATCAAGGGT	42666	0.37900571626537327	No Hit
CGACATGGCTACGATGGGGTTAGTTTTTATTTATTAATTTTTATTATTTT	36005	0.31983548526074074	No Hit
CGACATGGCTACGATGGGGAGTTCTGGATCAAGCAGAGTAAAACTATCCA	21321	0.18939626110940852	No Hit
CGACATGGCTACGATGGGAGTTCTGGATCAAGCAGAGTAAAACTATCCAA	21303	0.18923636557449133	No Hit
CGACATGGCTACGATGTGAACCACAGGAAGCGCAAGTCCGGCACTGTCGG	16005	0.14217377979719917	No Hit
CGACATGGCTACGATGGGAGTACTCAAGTCATCGTTCTCTAGTTCAGAGT	12966	0.11517808365201401	No Hit
CGACATGGCTACGATGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	11896	0.10567318240971453	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACATGGC	321580	90.59316	3
CATGGCT	322550	90.52909	4
CGACATG	322880	89.96202	1
GACATGG	325775	89.41794	2
ATGGCTA	328430	88.843925	5
GCTACGA	333530	86.40458	8
TGGCTAC	339275	86.02618	6
GGCTACG	339825	85.76523	7
CTACGAT	333140	85.29243	9
ACGATGG	319790	42.795883	10-11
TACGATG	324520	42.79126	10-11
GATGGGA	107405	38.556583	12-13
CGATGGG	351395	38.389008	12-13
GATGGGG	195505	38.148357	12-13
ATGGGGG	39500	38.034306	14-15
ATGGGGA	89425	37.069164	14-15
TGGGGAA	28090	36.93574	14-15
ATGGGGC	29030	35.828796	14-15
ATGGGAA	40035	35.195705	14-15
TGGGGGA	13720	35.1301	14-15