DF1-MGI-2_parsed.fq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	DF1-MGI-2_parsed.fq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9646518
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGACATGGCTACGATGGGGGCGGTCGAGTGCCTCACAGTGTATCAAGGGT	38982	0.40410436180184395	No Hit
CGACATGGCTACGATGGGGTTAGTTTTTATTTATTAATTTTTATTATTTT	35991	0.37309835528218577	No Hit
CGACATGGCTACGATGTGAACCACAGGAAGCGCAAGTCCGGCACTGTCGG	16179	0.16771854880693737	No Hit
CGACATGGCTACGATGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	15323	0.15884488060873364	No Hit
CGACATGGCTACGATGGGAGTTCTGGATCAAGCAGAGTAAAACTATCCAA	14887	0.15432511503114388	No Hit
CGACATGGCTACGATGGGGAGTTCTGGATCAAGCAGAGTAAAACTATCCA	13261	0.13746929202848115	No Hit
CGATGGGGTTAGTTTTTATTTATTAATTTTTATTATTTTTTAAAAAATTA	12450	0.12906211339677176	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACATGGC	288650	90.57087	3
CATGGCT	289485	90.50607	4
CGACATG	289370	90.14898	1
GACATGG	292025	89.512856	2
ATGGCTA	296130	88.39263	5
TGGCTAC	303285	86.3259	6
GCTACGA	300455	86.29116	8
GGCTACG	304400	85.94793	7
CTACGAT	299710	85.16956	9
TACGATG	291625	42.66544	10-11
ACGATGG	287265	42.545662	10-11
GATGGGA	98710	37.427162	12-13
CGATGGG	323290	37.193375	12-13
ATGGGGG	37255	37.13448	14-15
GATGGGG	176990	37.129444	12-13
ATGGGGA	78455	36.393475	14-15
TGGGGAA	25630	35.658016	14-15
ATGGGGC	23725	34.846367	14-15
TGGGGAG	22030	34.785973	14-15
TGGGGGA	13150	34.63346	14-15