DF1-MGI-1_parsed.fq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	DF1-MGI-1_parsed.fq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9614295
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGACATGGCTACGATGGGGTTAGTTTTTATTTATTAATTTTTATTATTTT	48405	0.5034690531130988	No Hit
CGACATGGCTACGATGGGGGCGGTCGAGTGCCTCACAGTGTATCAAGGGT	41380	0.4304007730155981	No Hit
CGACATGGCTACGATGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	19781	0.20574571510443562	No Hit
CGACATGGCTACGATGTGAACCACAGGAAGCGCAAGTCCGGCACTGTCGG	16318	0.16972643339943283	No Hit
CGATGGGGTTAGTTTTTATTTATTAATTTTTATTATTTTTTAAAAAATTA	15318	0.1593252547378669	No Hit
CGACATGGCTACGATGGGAGTTCTGGATCAAGCAGAGTAAAACTATCCAA	14584	0.15169078960027751	No Hit
CGACATGGCTACGATGGGGAGTTCTGGATCAAGCAGAGTAAAACTATCCA	13252	0.13783641962307167	No Hit
CGACATGGCTACGATGGGGCGGTCGAGTGCCTCACAGTGTATCAAGGGTT	10093	0.10497909623118493	No Hit
CGACATGGCTACGATGGGGACGATGAGGACGAAGAGGAGTATGACGAGAA	9659	0.1004649846920653	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACATGGC	307170	90.69805	3
CATGGCT	308545	90.51779	4
CGACATG	307620	90.22008	1
GACATGG	310190	89.80896	2
ATGGCTA	314450	88.755196	5
TGGCTAC	321335	86.86959	6
GCTACGA	318675	86.7555	8
GGCTACG	321955	86.6293	7
CTACGAT	318250	85.608665	9
TACGATG	310450	42.879837	10-11
ACGATGG	305640	42.843445	10-11
GATGGGA	105210	37.94934	12-13
CGATGGG	340690	37.822525	12-13
GATGGGG	186330	37.762943	12-13
ATGGGGG	39265	37.2804	14-15
ATGGGGA	80430	37.141865	14-15
TGGGGAA	26380	36.83567	14-15
ATGGGGC	25030	35.827404	14-15
TGGGGAG	22105	35.08256	14-15
ATGGGAA	40175	35.00871	14-15