D3-MGI-1_parsed.fq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	D3-MGI-1_parsed.fq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	29774468
Sequences flagged as poor quality	0
Sequence length	100
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTTCAAACCGGCGTAAGCCAGGTTGGTTTCTATCCTCAAAATTATGGTAG	58470	0.1963763046916573	No Hit
CTGAGTTCAAACCGGCGTAAGCCAGGTTGGTTTCTATCCTCAAAATTATG	57731	0.1938943124021561	No Hit
CTCGATGTTGGATTAAGAGATTGGCAAGGTGCAGAAGTTTTGCTGGAAAG	45909	0.1541891529346553	No Hit
GTTGGATTAAGAGATTGGCAAGGTGCAGAAGTTTTGCTGGAAAGTCTGTT	43420	0.14582964169166682	No Hit
GCAGAAGTTTTGCTGGAAAGTCTGTTCGACTTTTAATCTCTTACATGATC	37371	0.12551357760615572	No Hit
CTTACATGATCTGAGTTCAAACCGGCGTAAGCCAGGTTGGTTTCTATCCT	36062	0.12111719342894724	No Hit
GTAGTTTCTTTAGTACGAAAGGATTAGGAAATTGAGACAAATGATCTCTT	35605	0.11958232133652227	No Hit
GGCGTAAGCCAGGTTGGTTTCTATCCTCAAAATTATGGTAGTTTCTTTAG	31329	0.10522102359645856	No Hit
CTCTTACATGATCTGAGTTCAAACCGGCGTAAGCCAGGTTGGTTTCTATC	31053	0.10429405489293714	No Hit
GATTAAGAGATTGGCAAGGTGCAGAAGTTTTGCTGGAAAGTCTGTTCGAC	30405	0.10211769358901727	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGACATG	48665	67.64369	1
ACATGGC	49790	66.3324	3
CATGGCT	54110	61.227688	4
GGCTACG	58970	55.838905	7
ATGGCTA	59905	55.336117	5
GCTACGA	59175	55.24039	8
CTACGAT	62940	51.42819	9
TGGCTAC	68230	48.61879	6
GACATGG	76535	43.158817	2
GGCCTCC	7085	35.62315	8
CGCTTGG	8195	32.403904	3
CCGCTTG	9125	28.946848	2
TGGCCTC	8600	28.910467	7
GCCTCCG	9035	27.62258	9
TACGATG	63890	25.033808	10-11
ACGATGG	63775	24.695728	10-11
ACCGCTT	10790	24.392958	1
CGATGGG	66220	22.836378	12-13
GCTTGGC	12220	21.961538	4
GATGGGA	37480	19.568705	12-13