D2-MGI-1_parsed.fq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	D2-MGI-1_parsed.fq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10863108
Sequences flagged as poor quality	0
Sequence length	100
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTTCAAACCGGCGTAAGCCAGGTTGGTTTCTATCCTCAAAATTATGGTAG	20817	0.191630240627268	No Hit
CTGAGTTCAAACCGGCGTAAGCCAGGTTGGTTTCTATCCTCAAAATTATG	20750	0.1910134742285541	No Hit
CTCGATGTTGGATTAAGAGATTGGCAAGGTGCAGAAGTTTTGCTGGAAAG	18968	0.17460932911649227	No Hit
GTTGGATTAAGAGATTGGCAAGGTGCAGAAGTTTTGCTGGAAAGTCTGTT	18486	0.1701722932332073	No Hit
GCAGAAGTTTTGCTGGAAAGTCTGTTCGACTTTTAATCTCTTACATGATC	15410	0.14185627170419368	No Hit
CTAGGGATAACAGCGTAATCTTTTTGGAGAGTTCAAATCGATAAAAAGGT	13176	0.12129125476797248	No Hit
GATTAAGAGATTGGCAAGGTGCAGAAGTTTTGCTGGAAAGTCTGTTCGAC	13093	0.12052720087105827	No Hit
CTTACATGATCTGAGTTCAAACCGGCGTAAGCCAGGTTGGTTTCTATCCT	12877	0.1185388196453538	No Hit
CTCTTACATGATCTGAGTTCAAACCGGCGTAAGCCAGGTTGGTTTCTATC	11875	0.10931494007055807	No Hit
GTAGTTTCTTTAGTACGAAAGGATTAGGAAATTGAGACAAATGATCTCTT	11869	0.10925970725873295	No Hit
GGCGTAAGCCAGGTTGGTTTCTATCCTCAAAATTATGGTAGTTTCTTTAG	11419	0.10511724637184865	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGACATG	16935	65.27547	1
ACATGGC	17770	62.314014	3
CATGGCT	19175	58.017735	4
ATGGCTA	20820	53.38857	5
GGCTACG	20885	53.064877	7
GCTACGA	21265	51.829296	8
CTACGAT	22375	48.92201	9
TGGCTAC	24360	45.938835	6
GACATGG	24675	44.87619	2
GGCCTCC	2535	39.676533	8
CGCTTGG	3160	33.762657	3
GCCTCCG	3060	33.637257	9
TGGCCTC	3280	30.521343	7
CCGCTTG	3575	29.843355	2
ACCGCTT	4025	26.50683	1
GCTTGGC	4390	24.088839	4
TACGATG	22995	23.607306	10-11
ACGATGG	22500	23.479113	10-11
CGATGGG	23215	22.047382	12-13
GATGGGA	12310	18.441105	12-13