Basic Statistics
Measure | Value |
---|---|
Filename | C2-MGI-2_parsed.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9414189 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 40 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGACATGGCTACGATGGGGTTAGTTTTTATTTATTAATTTTTATTATTTT | 57838 | 0.6143704996787297 | No Hit |
CGATGGGGTTAGTTTTTATTTATTAATTTTTATTATTTTTTAAAAAATTA | 18031 | 0.19153004045276764 | No Hit |
CGACATGGCTACGATGTGAACCACAGGAAGCGCAAGTCCGGCACTGTCGG | 10097 | 0.10725299863854443 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACATGGC | 126865 | 0.0 | 84.560356 | 3 |
CGACATG | 126900 | 0.0 | 84.36296 | 1 |
CATGGCT | 128305 | 0.0 | 83.83476 | 4 |
GACATGG | 128705 | 0.0 | 83.33685 | 2 |
ATGGCTA | 132625 | 0.0 | 80.97998 | 5 |
TGGCTAC | 135510 | 0.0 | 79.27326 | 6 |
GGCTACG | 138145 | 0.0 | 77.4584 | 7 |
GCTACGA | 139100 | 0.0 | 75.61223 | 8 |
CTACGAT | 140295 | 0.0 | 73.45728 | 9 |
CGATCCG | 10885 | 0.0 | 38.860817 | 1 |
TACGATG | 134365 | 0.0 | 37.037884 | 10-11 |
ACGATGG | 132190 | 0.0 | 36.658863 | 10-11 |
GATCCGA | 12825 | 0.0 | 31.589865 | 2 |
CGATGGG | 158240 | 0.0 | 30.041803 | 12-13 |
GATGGGG | 74275 | 0.0 | 29.987612 | 12-13 |
ATCCGAC | 13480 | 0.0 | 29.566765 | 3 |
GATGGGA | 53195 | 0.0 | 29.29824 | 12-13 |
TCCGACT | 13915 | 0.0 | 28.372261 | 4 |
ATGGGGG | 13690 | 0.0 | 28.031776 | 14-15 |
ATGGGGT | 27510 | 0.0 | 27.233007 | 14-15 |