N E X T F L O W  ~  version 22.04.5
NOTE: Your local project version looks outdated - a different revision is available in the remote repository [d1e1de9d6d]
Launching `https://github.com/guigolab/grape-nf` [exotic_dubinsky] DSL1 - revision: a39ce19e95 [v1.1.0]

G R A P E ~ RNA-seq Pipeline

General parameters
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Index file                      : /nfs/users/project/precisiontox_008279/grape-MGI_comaprison/ENCODE_comparison/encode_grape/index.tsv
Genome                          : /nfs/users/project/precisiontox_008279/grape-MGI_comaprison/ENCODE_comparison/encode_grape/GCF_000001215.4_Release_6_plus_ISO1_MT_genomic.fa
Annotation                      : /nfs/users/project/precisiontox_008279/grape-MGI_comaprison/ENCODE_comparison/encode_grape/GCF_000001215.4_Release_6_plus_ISO1_MT_genomic_modified_4.gtf
Pipeline steps                  : mapping bigwig contig quantification
Pipeline profile                : standard

Mapping parameters
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Max mismatches                  : 4
Max multimaps                   : 10

Bigwig parameters
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References prefix               : all

Quantification parameters
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Tool                            : RSEM
Mode                            : Transcriptome

Execution information
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Use containers                  : false

===============
Output files db -> /nfs/users/project/precisiontox_008279/grape-MGI_comaprison/ENCODE_comparison/encode_grape/pipeline.db
===============

Dataset information
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Number of sequenced samples     : 1
Number of sequencing runs       : 4
Merging                         : by sample

[f0/95be58] Submitted process > txIndex (GCF_000001215-RSEM-1.2.21)
[2e/b127f0] Submitted process > fastaIndex (GCF_000001215-samtools-1.3.1)
[28/7f4048] Submitted process > index (GCF_000001215-STAR-2.4.0j)