![[ICO]](/icons/blank.gif) | Name | Last modified | Size |
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![[DIR]](/icons/back.gif) | Parent Directory | | - |
![[DIR]](/icons/folder.gif) | varDecom/ | 09-Apr-2018 17:46 | - |
| scRNA/ | 18-Apr-2018 01:22 | - |
| rgc/ | 09-Apr-2018 18:26 | - |
| mouse-corr/ | 17-Jul-2020 09:35 | - |
| linear-tissue-model/ | 09-Apr-2018 23:06 | - |
| line-plots/ | 01-May-2018 14:20 | - |
| DEG/ | 09-Apr-2018 18:11 | - |
| chrom-states/ | 22-Apr-2018 09:26 | - |
| aggregation/ | 21-Jul-2018 12:30 | - |
![[ ]](/icons/layout.gif) | tSNE.montage.erc.filter-rRNA-pseudogenes-dmel.trypsin.gene.TPM_new.idr_NA.pdf | 07-Apr-2018 21:23 | 570K |
| tSNE.montage.comp.2018-04-04_trypsin_TPM.pdf | 17-Apr-2018 22:45 | 317K |
| tmp.pdf | 28-Nov-2018 10:18 | 11K |
| TF-counts-per-deg-minor-group-0-1_sorted_subset.pdf | 02-Feb-2019 11:13 | 17K |
| TF-counts-per-deg-minor-group-0-1_sorted.pdf | 02-Feb-2019 11:12 | 20K |
| teste.heatmap2.pdf | 06-Jun-2018 22:33 | 105K |
| teste.heatmap.pdf | 06-Jun-2018 22:43 | 66K |
| test2.pdf | 17-Nov-2018 22:15 | 103K |
| test.pdf | 30-Jan-2019 17:58 | 13K |
![[IMG]](/icons/image2.gif) | test.GIF | 08-Oct-2019 23:06 | 2.7M |
| summary.out.pdf | 22-Oct-2018 03:26 | 6.6K |
| SOM.pdf | 24-Jul-2019 21:52 | 133K |
| scatter4.GIF | 08-Oct-2019 20:59 | 3.4M |
| scatter3.GIF | 08-Oct-2019 20:30 | 5.5M |
| scatter2.GIF | 08-Oct-2019 20:30 | 6.3M |
| scatter.GIF | 08-Oct-2019 20:09 | 7.3M |
| sashimi.pdf | 07-Feb-2019 12:38 | 86K |
| Rplots.pdf | 22-Mar-2019 13:42 | 3.5K |
| rpkm_fraction.TPM_trypsin_nonFilt.pdf | 09-Apr-2018 15:57 | 1.9M |
| rpkm_fraction.TPM_trypsin_filt.pdf | 09-Apr-2018 15:57 | 2.0M |
| RNApolII.erc.pdf | 18-May-2018 15:16 | 121K |
| prop_mapped_reads.png | 22-Oct-2018 03:24 | 11K |
| proj.score.S4.pdf | 07-Apr-2018 21:56 | 4.7K |
| points.norm-avg-nbAlignments_non-core.pdf | 29-Jul-2018 01:30 | 50K |
| points.norm-avg-nbAlignments_color-by-phastCons.pdf | 29-Jul-2018 01:35 | 85K |
| points.norm-avg-nbAlignments.pdf | 29-Jul-2018 01:26 | 70K |
| points.max-peak-length.pdf | 29-Jul-2018 01:21 | 89K |
| points.diff-nbAlignments.pdf | 29-Jul-2018 01:16 | 73K |
| points.avg-peak-length.pdf | 29-Jul-2018 01:16 | 92K |
| per7.tmp.map.pdf | 07-Apr-2018 21:25 | 6.1K |
| per4.comp.2018-04-04_trypsin_TPM.map.pdf | 17-Apr-2018 22:50 | 5.3K |
| pca.labels.counts.gt5TPM2samples.3D.pdf | 14-Apr-2018 01:05 | 4.9K |
| pca.dv.deg.batch.pdf | 14-Apr-2018 01:05 | 4.7K |
| pca.dv.deg.3D.pdf | 14-Apr-2018 01:05 | 5.0K |
| pca.counts.gt5TPM2samples.batch.pdf | 14-Apr-2018 01:05 | 4.8K |
| pca.ap.deg.batch.pdf | 14-Apr-2018 01:05 | 4.8K |
| pca.ap.deg.3D.pdf | 14-Apr-2018 01:05 | 5.0K |
| pca.3_4.labels.counts.gt5TPM2samples.pdf | 14-Apr-2018 01:05 | 5.0K |
| pca.3_4.dv.deg.pdf | 14-Apr-2018 01:05 | 4.8K |
| pca.3_4.ap.deg.pdf | 14-Apr-2018 01:05 | 4.9K |
| pca.3D.angles.pdf | 08-Oct-2019 23:48 | 605K |
| pca.1_3.labels.counts.gt5TPM2samples.pdf | 14-Apr-2018 01:05 | 5.0K |
| pca.1_3.dv.deg.pdf | 14-Apr-2018 01:05 | 4.8K |
| pca.1_3.ap.deg.pdf | 14-Apr-2018 01:05 | 4.9K |
| pca.1_2.labels.counts.gt5TPM2samples.pdf | 14-Apr-2018 01:05 | 5.0K |
| pca.1_2.inuse.idr.erc.dmel.selected.replicates.trypsin.gene.FPKM.idr_NA.pdf | 22-Oct-2018 03:29 | 6.1K |
| pca.1_2.dv.deg.pdf | 14-Apr-2018 01:05 | 4.8K |
| pca.1_2.ap.deg.pdf | 14-Apr-2018 01:05 | 4.9K |
| output.GIF | 08-Oct-2019 19:58 | 18M |
| NIH3K27ac_peak.pdf | 25-May-2018 16:48 | 196K |
| nbPSI-envents.pdf | 01-Feb-2019 22:54 | 5.0K |
| movie.gif | 08-Oct-2019 16:53 | 19K |
![[TXT]](/icons/text.gif) | mouse_cns_E18_rep1_1_fastqc.html | 12-Jul-2018 15:57 | 336K |
| Liver.e13.5.1.pdf | 24-Jul-2019 21:52 | 8.2K |
| Liver.12wpc.27.pdf | 24-Jul-2019 22:03 | 8.1K |
| heatmap_SE.pdf | 02-Feb-2019 00:52 | 16K |
| heatmap_RI.pdf | 02-Feb-2019 00:52 | 12K |
| heatmap_pearson_ward.D2_numbersOff_2018-04-04_trypsin_TPM.pdf | 09-Apr-2018 16:04 | 31K |
| heatmap_pearson_projectionS4_ward.D2_woNum.pdf | 07-Apr-2018 21:55 | 32K |
| heatmap_pearson_inuse.idr.erc.dmel.selected.replicates.trypsin.gene.FPKM.idr_NA_all_plain.pdf | 22-Oct-2018 03:31 | 15K |
| heatmap_pearson_inuse.idr.erc.dmel.selected.replicates.trypsin.gene.FPKM.idr_NA.pdf | 22-Oct-2018 03:32 | 44K |
| heatmap_pearson_2018-04-04_trypsin_TPM.pdf | 09-Apr-2018 16:07 | 45K |
| heatmap_MX.pdf | 02-Feb-2019 00:52 | 10K |
| heatmap_AL.pdf | 02-Feb-2019 00:52 | 10K |
| heatmap_AF.pdf | 02-Feb-2019 00:52 | 30K |
| heatmap_A5.pdf | 02-Feb-2019 00:52 | 15K |
| heatmap_A3.pdf | 02-Feb-2019 00:52 | 11K |
| H3K27ac.erc.pdf | 18-May-2018 15:16 | 122K |
| H3K4me3_NG_ERC_QN.pdf | 22-Mar-2019 13:42 | 83K |
| H3K4me3_NG_ERC.pdf | 22-Mar-2019 13:43 | 82K |
| H3K4me1.erc.pdf | 18-May-2018 15:16 | 126K |
| GO_modules_top10.pdf | 31-Jul-2020 09:41 | 12K |
| GO_modules_top3.png | 23-Jun-2020 08:59 | 100K |
| GO_modules_top3.pdf | 31-Jul-2020 09:38 | 7.5K |
| GO_modules_all_shrinked.pdf | 31-Jul-2020 09:44 | 43K |
| GO_modules_all.pdf | 23-Jun-2020 09:11 | 34K |
| GO_modules.png | 23-Jun-2020 08:43 | 153K |
| GO_modules.pdf | 31-Jul-2020 09:35 | 7.5K |
| GO_groups_allterms_filt_projection_score.pdf | 09-Apr-2018 16:19 | 5.0K |
| GO_groups_allterms_filtered_all.pdf | 17-Apr-2018 23:26 | 8.5K |
| GO_groups_allterms_filtered.pdf | 17-Apr-2018 23:17 | 7.6K |
| GO_groups_allterms.pdf | 14-Apr-2018 01:28 | 12K |
| GO_bg-DEG_most-specific_selectedterms_filtered_TSGs.pdf | 05-Oct-2019 23:31 | 5.3K |
| GO_bg-DEG_most-specific_selectedterms_filtered_TGs.pdf | 05-Oct-2019 23:31 | 5.9K |
| GO_bg-DEG_most-specific_selectedterms_filtered_SGs.pdf | 05-Oct-2019 23:31 | 5.8K |
| GO_bg-DEG_most-specific_allterms_filtered_TSGs.pdf | 05-Oct-2019 23:22 | 6.6K |
| GO_bg-DEG_most-specific_allterms_filtered_TGs.pdf | 05-Oct-2019 23:22 | 9.6K |
| GO_bg-DEG_most-specific_allterms_filtered_SGs_L3_WP.pdf | 05-Oct-2019 23:22 | 11K |
| GO_bg-DEG_most-specific_allterms_filtered_SGs.pdf | 05-Oct-2019 23:22 | 9.0K |
| GO.pca.1_2.pdf | 30-Jan-2019 17:21 | 28K |
| ggheatmap_TPM_dv.pdf | 14-Apr-2018 12:35 | 28K |
| ggheatmap_TPM_comp.pdf | 14-Apr-2018 13:38 | 42K |
| ggheatmap_TPM_ap.pdf | 14-Apr-2018 12:33 | 20K |
| ggheatmap_genes_sortedDEG_avg_TPM_rdata.pdf | 22-Oct-2018 03:37 | 218K |
| ggheatmap_genes_sortedDEG_avg_TPM_minor-groups.pdf | 13-Apr-2020 15:44 | 188K |
| ggheatmap_genes_sortedDEG_avg_TPM_all_tissues.pdf | 22-Oct-2018 03:37 | 310K |
| ggheatmap_genes_sortedDEG_avg_TPM.pdf | 22-Oct-2018 03:37 | 165K |
| ggboxplot-permutations.pdf | 07-Nov-2019 21:08 | 18K |
| Genomic.Features.r6.36.pdf | 07-Dec-2020 22:05 | 5.8K |
| gene_profiles_rgc.pdf | 06-Jun-2018 23:22 | 8.7K |
| full.pdf | 07-Feb-2019 12:57 | 169K |
| fly.jpg | 01-Nov-2018 16:39 | 56K |
| figureS3.png | 19-Apr-2020 19:46 | 85K |
| figureS3.pdf | 19-Apr-2020 19:45 | 78K |
| figure5.pdf | 28-Oct-2019 18:59 | 204M |
| figure4.pdf | 08-Oct-2019 00:47 | 35M |
| figure2.png | 19-Apr-2020 19:48 | 85K |
| figure1.pdf | 13-Oct-2019 18:31 | 739K |
| evol_plot_v2.pdf | 06-Nov-2018 15:05 | 299K |
| evol_plot.pdf | 13-Sep-2017 12:54 | 20M |
| evol.pdf | 21-Jan-2019 16:18 | 419K |
| edgeR.cpm1.n2.out.pdf | 14-Apr-2018 00:54 | 80K |
| edgeR.cpm1.n2.dv.pdf | 14-Apr-2018 00:54 | 71K |
| edgeR.cpm1.n2.ap.pdf | 14-Apr-2018 00:54 | 68K |
| Drosophila_melanogaster.jpg | 10-Dec-2014 18:55 | 9.6K |
| DEG.pca.1_2.pdf | 27-Apr-2020 09:54 | 34K |
| DEG-in-cluster-minor-groups_byGeneType.pdf | 19-Oct-2018 16:12 | 6.0K |
| corr500-WL3.pdf | 28-Nov-2018 10:18 | 11K |
| corr500-H3K4m3.pdf | 28-Nov-2018 10:18 | 14K |
| corr-WL3.pdf | 28-Nov-2018 10:18 | 11K |
| corr-H3K4m3.pdf | 28-Nov-2018 10:18 | 14K |
| color.scatterplot.anova.abline.threshold.Tissue_Stage.new-tissue.gt5TPM2samples_0-1_density.pdf | 13-Apr-2020 15:15 | 21K |
| boxplot.numberOfAlignments.pdf | 29-Jul-2018 01:13 | 13K |
| boxplot.min.pdf | 29-Jul-2018 01:11 | 31K |
| boxplot.max.pdf | 29-Jul-2018 01:11 | 31K |
| boxplot.diff.pdf | 29-Jul-2018 01:13 | 8.3K |
| boxplot-peak-length.pdf | 05-May-2020 18:36 | 237K |
| boxplot-merge-peak-length.pdf | 05-May-2020 18:33 | 137K |
| boxplot-intersect-peak-length.pdf | 05-May-2020 18:32 | 106K |
| barplot_sw_states_selected.pdf | 08-Oct-2019 01:24 | 6.7K |
| barplot_ratioTPM_nonFilt.pdf | 09-Apr-2018 15:46 | 7.9K |
| barplot_ratioTPM_filt.pdf | 09-Apr-2018 15:50 | 7.2K |
| barplot4.pdf | 05-Jun-2020 09:59 | 5.8K |
| barplot3.pdf | 05-Jun-2020 09:59 | 5.3K |
| barplot2.pdf | 05-Jun-2020 09:59 | 5.2K |
| barplot.pdf | 05-Jun-2020 09:59 | 5.4K |
| barplot.H3K4me3.pdf | 07-Nov-2019 02:10 | 5.6K |
| barplot.faire-nrom-per-target-group-TF-TF_sw_nbtargets.pdf | 06-Nov-2019 23:40 | 6.3K |
| barplot.faire-nrom-per-target-group-TF-TF_nbtargets.pdf | 07-Nov-2019 00:02 | 5.7K |
| barplot.faire-nrom-per-target-group-TF-target_sw_nbtargets.pdf | 06-Nov-2019 23:40 | 6.6K |
| barplot.faire-nrom-per-target-group-TF-target_nbtargets.pdf | 07-Nov-2019 00:04 | 5.9K |
| all-AG.pdf | 12-Nov-2018 14:51 | 5.8K |
| all-AEG.pdf | 12-Nov-2018 14:54 | 5.6K |
| 180419_D00733_0322_ACCC66ANXX_ElenaVizcaya.pdf | 07-Jun-2018 15:14 | 614K |
| 0h__groups.png | 05-Jun-2018 15:01 | 155K |
| 0h__groups.pdf | 05-Jun-2018 15:18 | 8.9M |
| 0h_S_up_groups.pdf | 05-Jun-2018 17:14 | 9.1M |
| 0h_S_down_groups.pdf | 05-Jun-2018 17:14 | 683K |
| 0h_reg_up_groups.pdf | 05-Jun-2018 16:51 | 9.1M |
| 0h_reg_down_groups.pdf | 05-Jun-2018 16:51 | 689K |
| 0h_groups.png | 05-Jun-2018 16:32 | 102K |
| 0h_groups.pdf | 05-Jun-2018 16:51 | 62M |
| 0h_C_up_groups.pdf | 05-Jun-2018 17:14 | 8.7M |
| 0h_C_down_groups.pdf | 05-Jun-2018 17:14 | 650K |
| 0h_ctrl_groups.png | 05-Jun-2018 16:34 | 112K |
| 0h_ctrl_groups.pdf | 05-Jun-2018 16:51 | 8.7M |
| 0h_25_groups.pdf | 05-Jun-2018 15:40 | 9.7M |
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![[IMG]](test.GIF){kind=small}
![[IMG]](scatter4.GIF){kind=small}
![[IMG]](scatter3.GIF){kind=small}
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![[IMG]](movie.gif){kind=small}
![[IMG]](GO_modules_top3.png){kind=small}
![[IMG]](GO_modules.png){kind=small}
![[IMG]](fly.jpg){kind=small}
![[IMG]](figureS3.png){kind=small}
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![[IMG]](Drosophila_melanogaster.jpg){kind=small}
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