ChromHMM Report

Input Directory: outputbinarydir_RNASeq_CHIPSeq_tissue-stage
Output Directory: tissue-stage_RC_model_21states
Number of States: 21
Assembly: dm6
Full ChromHMM command: LearnModel -nobrowser -p 4 outputbinarydir_RNASeq_CHIPSeq_tissue-stage tissue-stage_RC_model_21states 21 dm6

Model Parameters


  • Emission Parameter SVG File
  • Emission Parameter Tab-Delimited Text File

  • Transition Parameter SVG File
  • Transition Parameter Tab-Delimited Text File

  • All Model Parameters Tab-Delimited Text File

    Genome Segmentation Files

  • eye_21 Segmentation File (Four Column Bed File)
  • wing_21 Segmentation File (Four Column Bed File)

    State Enrichments

    eye_21 Enrichments


  • eye_21 Overlap Enrichment SVG File
  • eye_21 Overlap Enrichment Tab-Delimited Text File

  • eye_21_RefSeqTES_neighborhood Enrichment SVG File
  • eye_21_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File

  • eye_21_RefSeqTSS_neighborhood Enrichment SVG File
  • eye_21_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File

    wing_21 Enrichments


  • wing_21 Overlap Enrichment SVG File
  • wing_21 Overlap Enrichment Tab-Delimited Text File

  • wing_21_RefSeqTES_neighborhood Enrichment SVG File
  • wing_21_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File

  • wing_21_RefSeqTSS_neighborhood Enrichment SVG File
  • wing_21_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File