Using 4 threads for Baum-Welch training Writing to file tissue-stage_RC_model_21states/transitions_21.txt Writing to file tissue-stage_RC_model_21states/emissions_21.txt Writing to file tissue-stage_RC_model_21states/emissions_21.svg Writing to file tissue-stage_RC_model_21states/emissions_21.png Writing to file tissue-stage_RC_model_21states/transitions_21.png Writing to file tissue-stage_RC_model_21states/transitions_21.svg Writing to file tissue-stage_RC_model_21states/model_21.txt Iteration Estimated Log Likelihood Change Total Time (secs) 1 -3779066.513 - 4.1 2 -3524279.455 254787.058 7.6 3 -3441422.222 82857.233 10.9 4 -3400120.063 41302.159 14.0 5 -3373613.546 26506.517 17.3 6 -3353583.492 20030.054 20.3 7 -3338470.279 15113.213 23.7 8 -3327536.770 10933.509 27.6 9 -3319471.299 8065.471 31.4 10 -3313068.503 6402.796 34.9 11 -3307350.782 5717.722 37.9 12 -3301831.763 5519.019 41.5 13 -3296574.545 5257.218 45.0 14 -3291947.791 4626.754 48.4 15 -3288219.550 3728.241 51.7 16 -3285231.721 2987.829 55.0 17 -3282724.172 2507.549 58.2 18 -3280594.543 2129.629 61.9 19 -3278817.383 1777.160 65.5 20 -3277362.117 1455.266 68.7 21 -3276167.787 1194.331 71.8 22 -3275178.857 988.930 74.8 23 -3274349.363 829.494 77.7 24 -3273639.092 710.271 81.3 25 -3273015.798 623.294 84.5 26 -3272455.614 560.184 87.9 27 -3271941.407 514.207 90.8 28 -3271460.520 480.887 94.6 29 -3271002.970 457.550 98.0 30 -3270560.184 442.786 101.2 31 -3270124.131 436.053 104.5 32 -3269686.705 437.426 107.8 33 -3269239.373 447.332 110.9 34 -3268773.187 466.186 114.0 35 -3268278.894 494.293 117.5 36 -3267746.592 532.302 121.2 37 -3267165.127 581.465 124.7 38 -3266522.054 643.073 127.9 39 -3265804.707 717.347 131.6 40 -3265002.375 802.332 135.1 41 -3264109.017 893.358 138.2 42 -3263126.388 982.629 141.6 43 -3262067.250 1059.138 144.6 44 -3260956.458 1110.793 148.0 45 -3259828.353 1128.104 151.4 46 -3258721.785 1106.568 155.2 47 -3257673.952 1047.833 158.6 48 -3256714.192 959.760 161.6 49 -3255860.015 854.177 164.6 50 -3255116.662 743.353 167.6 51 -3254479.358 637.304 170.9 52 -3253936.671 542.687 174.1 53 -3253474.031 462.640 177.1 54 -3253076.580 397.452 180.3 55 -3252730.882 345.698 183.7 56 -3252425.653 305.229 186.8 57 -3252151.872 273.781 190.5 58 -3251902.593 249.279 193.6 59 -3251672.647 229.946 196.8 60 -3251458.296 214.351 200.1 61 -3251256.882 201.414 203.1 62 -3251066.462 190.419 206.5 63 -3250885.447 181.016 209.5 64 -3250712.245 173.202 212.5 65 -3250544.960 167.285 215.6 66 -3250381.138 163.822 218.6 67 -3250217.575 163.564 221.6 68 -3250050.176 167.399 224.7 69 -3249873.868 176.308 227.6 70 -3249682.583 191.285 230.3 71 -3249469.437 213.146 233.8 72 -3249227.284 242.152 236.9 73 -3248949.931 277.353 239.9 74 -3248634.117 315.814 243.0 75 -3248281.901 352.216 245.9 76 -3247902.301 379.600 248.9 77 -3247510.814 391.487 252.0 78 -3247126.157 384.657 255.0 79 -3246765.431 360.725 258.0 80 -3246440.115 325.316 261.0 81 -3246154.655 285.460 264.1 82 -3245907.498 247.157 267.2 83 -3245693.269 214.229 270.2 84 -3245505.096 188.173 272.9 85 -3245336.312 168.784 276.4 86 -3245181.163 155.149 279.5 87 -3245034.948 146.214 282.7 88 -3244893.987 140.961 285.5 89 -3244755.501 138.486 288.3 90 -3244617.471 138.030 291.1 91 -3244478.496 138.975 294.3 92 -3244337.674 140.822 297.3 93 -3244194.520 143.154 300.3 94 -3244048.897 145.624 303.4 95 -3243900.928 147.969 306.2 96 -3243750.900 150.028 309.2 97 -3243599.198 151.701 312.1 98 -3243446.294 152.905 315.4 99 -3243292.658 153.635 318.3 100 -3243138.625 154.034 321.3 101 -3242984.283 154.341 324.4 102 -3242829.432 154.851 327.4 103 -3242673.543 155.889 332.8 104 -3242515.727 157.816 335.9 105 -3242354.696 161.031 338.9 106 -3242188.731 165.965 342.0 107 -3242015.666 173.065 345.0 108 -3241832.930 182.736 348.0 109 -3241637.669 195.261 351.0 110 -3241427.045 210.624 354.1 111 -3241198.758 228.287 357.0 112 -3240951.830 246.928 360.3 113 -3240687.586 264.244 363.3 114 -3240410.584 277.002 366.3 115 -3240129.056 281.527 371.0 116 -3239854.175 274.881 374.1 117 -3239597.662 256.514 376.9 118 -3239368.463 229.199 379.9 119 -3239170.461 198.002 383.1 120 -3239002.581 167.880 386.1 121 -3238860.643 141.938 389.2 122 -3238739.376 121.268 392.2 123 -3238633.670 105.705 395.1 124 -3238539.087 94.584 398.0 125 -3238451.982 87.105 401.1 126 -3238369.618 82.365 404.0 127 -3238290.384 79.234 407.4 128 -3238214.025 76.359 410.4 129 -3238141.519 72.506 413.4 130 -3238074.463 67.056 416.2 131 -3238014.271 60.192 419.2 132 -3237961.645 52.626 422.2 133 -3237916.491 45.154 425.3 134 -3237878.158 38.333 428.6 135 -3237845.733 32.425 431.4 136 -3237818.277 27.456 434.4 137 -3237794.944 23.333 437.6 138 -3237775.017 19.927 440.4 139 -3237757.912 17.106 443.4 140 -3237743.152 14.760 446.2 141 -3237730.354 12.798 449.2 142 -3237719.203 11.151 452.0 143 -3237709.441 9.762 455.0 144 -3237700.854 8.587 457.9 145 -3237693.260 7.594 461.0 146 -3237686.502 6.757 463.8 147 -3237680.444 6.058 466.7 148 -3237674.957 5.486 469.6 149 -3237669.919 5.039 472.5 150 -3237665.196 4.722 475.4 151 -3237660.638 4.558 478.4 152 -3237656.053 4.585 481.3 153 -3237651.185 4.868 484.2 154 -3237645.673 5.512 487.1 155 -3237638.998 6.675 490.3 156 -3237630.409 8.589 493.5 157 -3237618.828 11.581 496.7 158 -3237602.752 16.077 499.8 159 -3237580.175 22.577 503.0 160 -3237548.635 31.540 506.0 161 -3237505.493 43.142 509.1 162 -3237448.586 56.907 512.4 163 -3237377.226 71.361 515.2 164 -3237293.148 84.077 518.1 165 -3237200.747 92.401 521.1 166 -3237106.117 94.630 524.0 167 -3237015.308 90.809 527.2 168 -3236932.803 82.505 530.4 169 -3236860.934 71.870 533.9 170 -3236800.168 60.766 536.9 171 -3236749.775 50.393 539.8 172 -3236708.442 41.332 542.8 173 -3236674.702 33.741 545.6 174 -3236647.150 27.552 548.6 175 -3236624.546 22.604 551.7 176 -3236605.818 18.728 554.4 177 -3236590.039 15.779 557.4 178 -3236576.366 13.672 560.4 179 -3236563.983 12.383 563.3 180 -3236552.037 11.946 566.1 181 -3236539.628 12.409 569.7 182 -3236525.915 13.712 572.6 183 -3236510.401 15.514 575.5 184 -3236493.303 17.099 578.6 185 -3236475.679 17.624 581.8 186 -3236459.033 16.646 584.7 187 -3236444.609 14.424 587.7 188 -3236432.947 11.662 590.6 189 -3236423.928 9.019 593.6 190 -3236417.080 6.848 596.6 191 -3236411.863 5.217 599.5 192 -3236407.813 4.050 602.6 193 -3236404.586 3.227 605.6 194 -3236401.945 2.641 608.6 195 -3236399.729 2.216 611.6 196 -3236397.831 1.898 614.5 197 -3236396.178 1.652 617.5 198 -3236394.721 1.458 620.9 199 -3236393.422 1.299 623.8 200 -3236392.254 1.168 626.8 Writing to file tissue-stage_RC_model_21states/eye_21_segments.bed Writing to file tissue-stage_RC_model_21states/wing_21_segments.bed Writing to file tissue-stage_RC_model_21states/eye_21_overlap.txt Writing to file tissue-stage_RC_model_21states/eye_21_overlap.png Writing to file tissue-stage_RC_model_21states/eye_21_overlap.svg Writing to file tissue-stage_RC_model_21states/eye_21_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_21states/eye_21_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_21states/eye_21_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_21states/eye_21_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_21states/eye_21_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_21states/eye_21_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_21states/wing_21_overlap.txt Writing to file tissue-stage_RC_model_21states/wing_21_overlap.png Writing to file tissue-stage_RC_model_21states/wing_21_overlap.svg Writing to file tissue-stage_RC_model_21states/wing_21_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_21states/wing_21_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_21states/wing_21_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_21states/wing_21_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_21states/wing_21_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_21states/wing_21_RefSeqTSS_neighborhood.svg Warning could not automatically open in a browser tissue-stage_RC_model_21states/webpage_21.html