![[ICO]](/icons/blank.gif) | Name | Last modified | Size |
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![[DIR]](/icons/back.gif) | Parent Directory | | - |
![[DIR]](/icons/folder.gif) | vertebrate_orthologs/ | 23-Nov-2017 15:01 | - |
| UCSC_tracks/ | 27-Apr-2018 09:37 | - |
| UCSC_hub/ | 28-May-2018 17:02 | - |
| summary-stats/ | 30-Oct-2017 14:09 | - |
| RNASeq_VS_ATAC/ | 06-Jun-2018 22:46 | - |
| RNASeq/ | 02-Jun-2018 16:22 | - |
| revigo_in-out-clusters/ | 04-Oct-2017 18:28 | - |
| revigo_gene_expression/ | 04-Oct-2017 18:21 | - |
| reusage/ | 29-Jul-2018 11:28 | - |
| orthologs/ | 14-Sep-2017 18:03 | - |
| myHub/ | 25-May-2017 10:24 | - |
| intersectH3K27ac/ | 01-Mar-2018 12:28 | - |
| interactive_RNASeq_FC1.7_NON-DEG-INCLUDED_WO-silent-genes/ | 24-Jun-2017 13:02 | - |
| interactive_RNASeq_FC1.7_NON-DEG-INCLUDED/ | 31-May-2017 11:28 | - |
| interactive_RNASeq_FC1.7/ | 31-May-2017 11:31 | - |
| interactive_RNASeq/ | 23-Mar-2017 15:15 | - |
| interactive_ATAC_FC1.5_quantile-norm/ | 29-Jun-2017 16:01 | - |
| interactive_ATAC_FC1.5_proximal_enhancer/ | 05-Jul-2017 16:03 | - |
| interactive_ATAC_FC1.5_per-replicate_all-peaks/ | 06-Jul-2017 15:21 | - |
| interactive_ATAC_FC1.5_per-genomic-region_all-peaks_replicate2/ | 06-Jul-2017 16:44 | - |
| interactive_ATAC_FC1.5_per-genomic-region_all-peaks_replicate1/ | 06-Jul-2017 16:44 | - |
| interactive_ATAC_FC1.5_NON-DEG-INCLUDED/ | 30-May-2017 17:58 | - |
| interactive_ATAC_FC1.5_first-intron/ | 05-Jul-2017 16:03 | - |
| interactive_ATAC_FC1.5_distal_enhancer/ | 05-Jul-2017 16:03 | - |
| interactive_ATAC_FC1.5_core-promoter/ | 05-Jul-2017 16:03 | - |
| interactive_ATAC_FC1.5/ | 30-May-2017 15:55 | - |
| interactive_ATAC_FC1.2_NON-DEG-INCLUDED/ | 30-May-2017 18:04 | - |
| interactive_ATAC_FC1.2/ | 30-May-2017 16:10 | - |
| interactive_ATAC/ | 21-Mar-2017 14:57 | - |
| interactive/ | 15-Jul-2017 22:11 | - |
| individual-plots/ | 10-Jul-2017 14:38 | - |
| GEO/ | 07-Jun-2018 12:16 | - |
| gene-clusters/ | 26-Jul-2018 16:07 | - |
| conservation/ | 31-Jul-2018 12:56 | - |
| chipseq/ | 30-May-2018 11:16 | - |
| ATAC/ | 25-Jul-2018 12:25 | - |
| 2018_Vizcaya-Molina_Klein_et-al/ | 01-Aug-2018 11:37 | - |
| 2017-06-26.validation-TSS/ | 27-Jun-2017 16:11 | - |
| 2017-06-13.log-heatmaps-groups/ | 13-Jun-2017 13:30 | - |
![[DIR]](/icons/bomb.gif) | 2017-06-13.aggregation.core_non-core/ | 15-Jun-2017 15:54 | - |
| 2017-06-13.aggregation-non-core/ | 13-Jun-2017 15:33 | - |
| 2017-06-13.aggregation-groups/ | 13-Jun-2017 14:29 | - |
| 2017-05-31.log-heatmaps-groups/ | 01-Jun-2017 16:48 | - |
| 2016-11-23/ | 23-Nov-2016 17:07 | - |
| 2016-08-27.peaks/ | 28-Aug-2016 12:43 | - |
![[ ]](/icons/layout.gif) | regeneration.dmel.2016.03.22.geneclassification.pdf | 22-Mar-2016 03:10 | 205K |
| regeneration.dmel.2016.01.20.DEG.pdf | 20-Jan-2016 16:37 | 418K |
| regeneration.dmel.2016.01.20.ATACseq.pdf | 26-Feb-2016 09:42 | 417K |
| regeneration.dmel.2015.12.03.control.genes.pdf | 03-Dec-2015 17:47 | 129K |
| regeneration.dmel.2015.11.23.DEG.pdf | 30-Nov-2015 17:51 | 846K |
| regeneration.2016.05.04.foldchange.geneexpression.pdf | 04-May-2016 15:46 | 187K |
| regeneration.2016.04.27.RNAseq.pdf | 27-Apr-2016 12:30 | 77K |
| regeneration.2016.04.26.ATACseq.pdf | 05-May-2016 17:27 | 1.1M |
| regeneration.2016.04.07.RNAseq.CRG.pdf | 07-Apr-2016 18:01 | 1.6M |
| regeneration.2016-06-20.npreg.pdf | 20-Jun-2016 19:26 | 1.0M |
| regeneration.2016-06-09.gene.pairs.pdf | 10-Jun-2016 11:18 | 82K |
| regeneration.2016-06-08.RNASeq.pdf | 09-Jun-2016 13:36 | 4.0M |
| regeneration.2016-06-02.RNASeq.pdf | 02-Jun-2016 21:29 | 4.0M |
| regeneration.2016-06-02.ATACSeq.pdf | 21-Jun-2016 14:26 | 12M |
![[TXT]](/icons/text.gif) | npr.upregulation0h.2016-09-15.tsv | 15-Sep-2016 20:41 | 49K |
| npr.flat0h.2016-09-15.tsv | 15-Sep-2016 20:41 | 37K |
| npr.downregulation0h.2016-09-15.tsv | 15-Sep-2016 20:41 | 3.5K |
| matrix.npr.upregulation0h.tsv | 15-Sep-2016 20:49 | 173K |
| matrix.npr.flat0h.tsv | 15-Sep-2016 20:49 | 123K |
| matrix.npr.downregulation0h.tsv | 15-Sep-2016 20:49 | 14K |
| heatmap_pearson.pdf | 03-Dec-2015 18:00 | 9.8K |
![[IMG]](/icons/image2.gif) | heatmap_genes_CRG_0hcontrol_0htreatment_25htreatment_dendro.upregulated.png | 05-May-2016 18:35 | 164K |
| heatmap_genes_CRG_0hcontrol_0htreatment_25htreatment_dendro.upregulated.pdf | 05-May-2016 18:32 | 14K |
| heatmap_genes_CRG_0hcontrol_0htreatment_25htreatment_dendro.downregulated.png | 05-May-2016 18:35 | 194K |
| heatmap_genes_CRG_0hcontrol_0htreatment_25htreatment_dendro.downregulated.pdf | 05-May-2016 18:32 | 15K |
| heatmap_genes.pdf | 16-Mar-2016 01:27 | 741K |
| heatmap.treatment.ser.slr.FPKM.large.pdf | 30-Nov-2015 15:49 | 12K |
| heatmap.treatment.ser.flr.FPKM.large.pdf | 30-Nov-2015 15:49 | 8.4K |
| heatmap.treatment.flr.slr.FPKM.large.pdf | 30-Nov-2015 15:49 | 5.8K |
| heatmap.treatment.fer.ser.FPKM.large.pdf | 30-Nov-2015 15:49 | 20K |
| heatmap.treatment.fer.flr.FPKM.large.pdf | 30-Nov-2015 15:49 | 6.4K |
| heatmap.slr.FPKM.large.pdf | 30-Nov-2015 15:49 | 27K |
| heatmap.ser.FPKM.large.pdf | 30-Nov-2015 15:49 | 6.9K |
| heatmap.mRNA.bothdirections.rownorm.spearman.average.0hupregulation.pdf | 27-Aug-2016 20:59 | 67K |
| heatmap.fer.FPKM.large.pdf | 30-Nov-2015 15:49 | 39K |
| heatmap.control.slr.cdv.FPKM.large.pdf | 30-Nov-2015 15:49 | 47K |
| heatmap.control.ser.cdv.FPKM.large.pdf | 30-Nov-2015 15:49 | 9.7K |
| heatmap.control.fer.slr.FPKM.large.pdf | 30-Nov-2015 15:49 | 16K |
| heatmap.control.fer.cdv.FPKM.large.pdf | 30-Nov-2015 15:49 | 40K |
| geneid.groups.tsv | 30-Nov-2015 17:36 | 42K |
| DEG.groups.tsv | 30-Nov-2015 18:05 | 58K |
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![[IMG]](heatmap_genes_CRG_0hcontrol_0htreatment_25htreatment_dendro.upregulated.png){kind=small}
![[IMG]](heatmap_genes_CRG_0hcontrol_0htreatment_25htreatment_dendro.downregulated.png){kind=small}