ChromHMM Report

Input Directory: outputbinarydir_RNASeq_CHIPSeq_tissue
Output Directory: tissue_RC_model_9states
Number of States: 9
Assembly: dm6
Full ChromHMM command: LearnModel -nobrowser -p 4 outputbinarydir_RNASeq_CHIPSeq_tissue tissue_RC_model_9states 9 dm6

Model Parameters


  • Emission Parameter SVG File
  • Emission Parameter Tab-Delimited Text File

  • Transition Parameter SVG File
  • Transition Parameter Tab-Delimited Text File

  • All Model Parameters Tab-Delimited Text File

    Genome Segmentation Files

  • antenna_9 Segmentation File (Four Column Bed File)
  • eye_9 Segmentation File (Four Column Bed File)
  • leg_9 Segmentation File (Four Column Bed File)
  • wing_9 Segmentation File (Four Column Bed File)

    State Enrichments

    antenna_9 Enrichments


  • antenna_9 Overlap Enrichment SVG File
  • antenna_9 Overlap Enrichment Tab-Delimited Text File

  • antenna_9_RefSeqTES_neighborhood Enrichment SVG File
  • antenna_9_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File

  • antenna_9_RefSeqTSS_neighborhood Enrichment SVG File
  • antenna_9_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File

    eye_9 Enrichments


  • eye_9 Overlap Enrichment SVG File
  • eye_9 Overlap Enrichment Tab-Delimited Text File

  • eye_9_RefSeqTES_neighborhood Enrichment SVG File
  • eye_9_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File

  • eye_9_RefSeqTSS_neighborhood Enrichment SVG File
  • eye_9_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File

    leg_9 Enrichments


  • leg_9 Overlap Enrichment SVG File
  • leg_9 Overlap Enrichment Tab-Delimited Text File

  • leg_9_RefSeqTES_neighborhood Enrichment SVG File
  • leg_9_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File

  • leg_9_RefSeqTSS_neighborhood Enrichment SVG File
  • leg_9_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File

    wing_9 Enrichments


  • wing_9 Overlap Enrichment SVG File
  • wing_9 Overlap Enrichment Tab-Delimited Text File

  • wing_9_RefSeqTES_neighborhood Enrichment SVG File
  • wing_9_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File

  • wing_9_RefSeqTSS_neighborhood Enrichment SVG File
  • wing_9_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File