Using 4 threads for Baum-Welch training Writing to file tissue_RC_model_9states/transitions_9.txt Writing to file tissue_RC_model_9states/emissions_9.txt Writing to file tissue_RC_model_9states/emissions_9.svg Writing to file tissue_RC_model_9states/emissions_9.png Writing to file tissue_RC_model_9states/transitions_9.png Writing to file tissue_RC_model_9states/transitions_9.svg Writing to file tissue_RC_model_9states/model_9.txt Iteration Estimated Log Likelihood Change Total Time (secs) 1 -5846105.136 - 4.4 2 -5281163.811 564941.326 7.3 3 -5163882.276 117281.534 10.4 4 -5084125.387 79756.889 13.0 5 -5020826.720 63298.667 15.7 6 -4983755.727 37070.993 18.6 7 -4958446.014 25309.713 21.1 8 -4930703.470 27742.544 23.7 9 -4897004.554 33698.916 26.0 10 -4861732.405 35272.149 28.6 11 -4838266.329 23466.076 31.2 12 -4828151.693 10114.636 33.6 13 -4823691.019 4460.674 36.2 14 -4821338.198 2352.821 38.7 15 -4819848.185 1490.014 41.2 16 -4818823.797 1024.388 43.8 17 -4818177.955 645.842 46.2 18 -4817808.381 369.573 48.8 19 -4817599.328 209.053 51.2 20 -4817474.618 124.711 53.8 21 -4817396.935 77.683 56.5 22 -4817347.752 49.183 58.9 23 -4817315.819 31.933 61.3 24 -4817293.879 21.940 63.7 25 -4817277.428 16.451 66.3 26 -4817264.022 13.407 68.8 27 -4817252.464 11.558 71.2 28 -4817242.189 10.275 73.7 29 -4817232.920 9.269 76.1 30 -4817224.509 8.411 78.9 31 -4817216.866 7.643 81.3 32 -4817209.925 6.940 83.7 33 -4817203.634 6.291 86.3 34 -4817197.943 5.691 88.8 35 -4817192.807 5.136 91.5 36 -4817188.183 4.624 93.8 37 -4817184.028 4.155 96.2 38 -4817180.302 3.726 98.7 39 -4817176.967 3.335 101.3 40 -4817173.987 2.980 104.0 41 -4817171.329 2.658 106.8 42 -4817168.962 2.367 109.4 43 -4817166.856 2.106 112.2 44 -4817164.985 1.871 114.8 45 -4817163.325 1.660 117.4 46 -4817161.853 1.472 120.0 47 -4817160.550 1.304 122.4 48 -4817159.396 1.153 124.7 49 -4817158.376 1.020 127.3 50 -4817157.475 0.901 129.8 51 -4817156.680 0.796 132.3 52 -4817155.977 0.702 134.9 53 -4817155.358 0.619 137.3 54 -4817154.812 0.546 140.0 55 -4817154.331 0.481 142.4 56 -4817153.907 0.424 145.1 57 -4817153.534 0.373 147.5 58 -4817153.205 0.329 149.9 59 -4817152.916 0.289 152.4 60 -4817152.661 0.254 155.0 61 -4817152.438 0.224 157.6 62 -4817152.241 0.197 160.1 63 -4817152.068 0.173 162.6 64 -4817151.915 0.152 165.2 65 -4817151.781 0.134 167.8 66 -4817151.664 0.118 170.6 67 -4817151.560 0.103 173.0 68 -4817151.469 0.091 175.6 69 -4817151.389 0.080 178.5 70 -4817151.319 0.070 181.5 71 -4817151.257 0.062 184.0 72 -4817151.203 0.054 186.6 73 -4817151.155 0.048 189.2 74 -4817151.113 0.042 191.7 75 -4817151.076 0.037 194.2 76 -4817151.043 0.033 197.0 77 -4817151.015 0.029 199.7 78 -4817150.989 0.025 202.3 79 -4817150.967 0.022 204.7 80 -4817150.948 0.019 207.3 81 -4817150.931 0.017 210.0 82 -4817150.916 0.015 212.4 83 -4817150.902 0.013 215.0 84 -4817150.891 0.012 217.6 85 -4817150.880 0.010 220.1 86 -4817150.871 0.009 222.7 87 -4817150.863 0.008 225.0 88 -4817150.856 0.007 227.5 89 -4817150.850 0.006 230.0 90 -4817150.844 0.006 232.6 91 -4817150.839 0.005 235.3 92 -4817150.835 0.004 237.7 93 -4817150.831 0.004 240.2 94 -4817150.828 0.003 242.9 95 -4817150.825 0.003 245.6 96 -4817150.822 0.003 248.0 97 -4817150.820 0.002 250.4 98 -4817150.818 0.002 252.8 99 -4817150.816 0.002 255.3 100 -4817150.814 0.002 257.8 101 -4817150.813 0.001 260.2 102 -4817150.812 0.001 262.7 103 -4817150.811 0.001 265.3 104 -4817150.810 0.001 267.9 105 -4817150.809 0.001 270.3 Writing to file tissue_RC_model_9states/antenna_9_segments.bed Writing to file tissue_RC_model_9states/eye_9_segments.bed Writing to file tissue_RC_model_9states/leg_9_segments.bed Writing to file tissue_RC_model_9states/wing_9_segments.bed Writing to file tissue_RC_model_9states/antenna_9_overlap.txt Writing to file tissue_RC_model_9states/antenna_9_overlap.png Writing to file tissue_RC_model_9states/antenna_9_overlap.svg Writing to file tissue_RC_model_9states/antenna_9_RefSeqTES_neighborhood.txt Writing to file tissue_RC_model_9states/antenna_9_RefSeqTES_neighborhood.png Writing to file tissue_RC_model_9states/antenna_9_RefSeqTES_neighborhood.svg Writing to file tissue_RC_model_9states/antenna_9_RefSeqTSS_neighborhood.txt Writing to file tissue_RC_model_9states/antenna_9_RefSeqTSS_neighborhood.png Writing to file tissue_RC_model_9states/antenna_9_RefSeqTSS_neighborhood.svg Writing to file tissue_RC_model_9states/eye_9_overlap.txt Writing to file tissue_RC_model_9states/eye_9_overlap.png Writing to file tissue_RC_model_9states/eye_9_overlap.svg Writing to file tissue_RC_model_9states/eye_9_RefSeqTES_neighborhood.txt Writing to file tissue_RC_model_9states/eye_9_RefSeqTES_neighborhood.png Writing to file tissue_RC_model_9states/eye_9_RefSeqTES_neighborhood.svg Writing to file tissue_RC_model_9states/eye_9_RefSeqTSS_neighborhood.txt Writing to file tissue_RC_model_9states/eye_9_RefSeqTSS_neighborhood.png Writing to file tissue_RC_model_9states/eye_9_RefSeqTSS_neighborhood.svg Writing to file tissue_RC_model_9states/leg_9_overlap.txt Writing to file tissue_RC_model_9states/leg_9_overlap.png Writing to file tissue_RC_model_9states/leg_9_overlap.svg Writing to file tissue_RC_model_9states/leg_9_RefSeqTES_neighborhood.txt Writing to file tissue_RC_model_9states/leg_9_RefSeqTES_neighborhood.png Writing to file tissue_RC_model_9states/leg_9_RefSeqTES_neighborhood.svg Writing to file tissue_RC_model_9states/leg_9_RefSeqTSS_neighborhood.txt Writing to file tissue_RC_model_9states/leg_9_RefSeqTSS_neighborhood.png Writing to file tissue_RC_model_9states/leg_9_RefSeqTSS_neighborhood.svg Writing to file tissue_RC_model_9states/wing_9_overlap.txt Writing to file tissue_RC_model_9states/wing_9_overlap.png Writing to file tissue_RC_model_9states/wing_9_overlap.svg Writing to file tissue_RC_model_9states/wing_9_RefSeqTES_neighborhood.txt Writing to file tissue_RC_model_9states/wing_9_RefSeqTES_neighborhood.png Writing to file tissue_RC_model_9states/wing_9_RefSeqTES_neighborhood.svg Writing to file tissue_RC_model_9states/wing_9_RefSeqTSS_neighborhood.txt Writing to file tissue_RC_model_9states/wing_9_RefSeqTSS_neighborhood.png Writing to file tissue_RC_model_9states/wing_9_RefSeqTSS_neighborhood.svg Warning could not automatically open in a browser tissue_RC_model_9states/webpage_9.html