ChromHMM Report

Input Directory: outputbinarydir_RNASeq_CHIPSeq/
Output Directory: RC_model_9states
Number of States: 9
Assembly: dm6
Full ChromHMM command: LearnModel -nobrowser -p 4 outputbinarydir_RNASeq_CHIPSeq/ RC_model_9states 9 dm6

Model Parameters


  • Emission Parameter SVG File
  • Emission Parameter Tab-Delimited Text File

  • Transition Parameter SVG File
  • Transition Parameter Tab-Delimited Text File

  • All Model Parameters Tab-Delimited Text File

    Genome Segmentation Files

  • L3_9 Segmentation File (Four Column Bed File)
  • LP_9 Segmentation File (Four Column Bed File)
  • WP_9 Segmentation File (Four Column Bed File)

    State Enrichments

    L3_9 Enrichments


  • L3_9 Overlap Enrichment SVG File
  • L3_9 Overlap Enrichment Tab-Delimited Text File

  • L3_9_RefSeqTES_neighborhood Enrichment SVG File
  • L3_9_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File

  • L3_9_RefSeqTSS_neighborhood Enrichment SVG File
  • L3_9_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File

    LP_9 Enrichments


  • LP_9 Overlap Enrichment SVG File
  • LP_9 Overlap Enrichment Tab-Delimited Text File

  • LP_9_RefSeqTES_neighborhood Enrichment SVG File
  • LP_9_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File

  • LP_9_RefSeqTSS_neighborhood Enrichment SVG File
  • LP_9_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File

    WP_9 Enrichments


  • WP_9 Overlap Enrichment SVG File
  • WP_9 Overlap Enrichment Tab-Delimited Text File

  • WP_9_RefSeqTES_neighborhood Enrichment SVG File
  • WP_9_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File

  • WP_9_RefSeqTSS_neighborhood Enrichment SVG File
  • WP_9_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File