Using 4 threads for Baum-Welch training Writing to file RC_model_9states/transitions_9.txt Writing to file RC_model_9states/emissions_9.txt Writing to file RC_model_9states/emissions_9.svg Writing to file RC_model_9states/emissions_9.png Writing to file RC_model_9states/transitions_9.png Writing to file RC_model_9states/transitions_9.svg Writing to file RC_model_9states/model_9.txt Iteration Estimated Log Likelihood Change Total Time (secs) 1 -4619222.330 - 3.6 2 -4185420.445 433801.884 6.2 3 -4099691.732 85728.713 8.6 4 -4052931.540 46760.192 10.8 5 -4014917.660 38013.881 12.9 6 -3980671.642 34246.017 14.9 7 -3952309.220 28362.422 17.3 8 -3931799.533 20509.687 19.4 9 -3911683.013 20116.520 21.6 10 -3891954.242 19728.771 23.6 11 -3873402.399 18551.843 25.8 12 -3861488.944 11913.455 28.0 13 -3851730.580 9758.364 30.2 14 -3839943.943 11786.636 32.3 15 -3826161.043 13782.900 34.4 16 -3811271.153 14889.890 36.6 17 -3799573.893 11697.260 38.6 18 -3792576.172 6997.722 40.7 19 -3788913.413 3662.759 42.8 20 -3787305.593 1607.820 45.1 21 -3786694.814 610.779 47.4 22 -3786446.534 248.280 49.6 23 -3786331.689 114.845 51.9 24 -3786271.603 60.086 54.1 25 -3786238.390 33.214 56.4 26 -3786219.215 19.174 58.5 27 -3786207.592 11.623 60.8 28 -3786200.183 7.408 63.0 29 -3786195.260 4.923 65.1 30 -3786191.875 3.385 67.1 31 -3786189.480 2.395 69.2 32 -3786187.742 1.738 71.4 33 -3786186.453 1.289 73.5 34 -3786185.477 0.976 75.6 35 -3786184.723 0.753 77.8 36 -3786184.132 0.591 79.9 37 -3786183.661 0.471 82.1 38 -3786183.280 0.381 84.3 39 -3786182.969 0.311 86.4 40 -3786182.712 0.257 88.3 41 -3786182.497 0.214 90.5 42 -3786182.317 0.180 92.6 43 -3786182.164 0.153 94.8 44 -3786182.034 0.130 97.0 45 -3786181.923 0.111 99.2 46 -3786181.827 0.096 101.2 47 -3786181.744 0.083 103.3 48 -3786181.672 0.072 105.5 49 -3786181.609 0.063 107.7 50 -3786181.554 0.055 109.8 51 -3786181.506 0.048 111.9 52 -3786181.464 0.042 114.4 53 -3786181.427 0.037 116.6 54 -3786181.394 0.033 118.8 55 -3786181.365 0.029 120.9 56 -3786181.339 0.026 123.0 57 -3786181.315 0.023 125.0 58 -3786181.295 0.021 127.0 59 -3786181.276 0.019 129.1 60 -3786181.259 0.017 131.3 61 -3786181.244 0.015 133.5 62 -3786181.231 0.014 135.6 63 -3786181.218 0.012 137.7 64 -3786181.207 0.011 140.0 65 -3786181.197 0.010 142.1 66 -3786181.187 0.009 144.2 67 -3786181.179 0.009 146.4 68 -3786181.171 0.008 148.6 69 -3786181.163 0.007 150.9 70 -3786181.157 0.007 153.3 71 -3786181.151 0.006 155.5 72 -3786181.145 0.006 157.9 73 -3786181.139 0.005 160.1 74 -3786181.134 0.005 162.3 75 -3786181.130 0.005 164.6 76 -3786181.125 0.004 166.9 77 -3786181.121 0.004 169.1 78 -3786181.118 0.004 171.4 79 -3786181.114 0.004 173.5 80 -3786181.111 0.003 175.6 81 -3786181.107 0.003 177.7 82 -3786181.104 0.003 179.9 83 -3786181.102 0.003 181.9 84 -3786181.099 0.003 184.1 85 -3786181.096 0.003 186.3 86 -3786181.094 0.002 188.4 87 -3786181.092 0.002 190.6 88 -3786181.089 0.002 192.6 89 -3786181.087 0.002 194.9 90 -3786181.085 0.002 197.1 91 -3786181.084 0.002 199.2 92 -3786181.082 0.002 201.4 93 -3786181.080 0.002 203.6 94 -3786181.078 0.002 205.8 95 -3786181.077 0.002 208.0 96 -3786181.075 0.001 210.1 97 -3786181.074 0.001 212.4 98 -3786181.073 0.001 214.5 99 -3786181.071 0.001 216.7 100 -3786181.070 0.001 218.8 101 -3786181.069 0.001 221.1 102 -3786181.068 0.001 223.2 103 -3786181.067 0.001 225.4 104 -3786181.066 0.001 227.6 105 -3786181.065 0.001 229.7 106 -3786181.064 0.001 231.7 Writing to file RC_model_9states/L3_9_segments.bed Writing to file RC_model_9states/LP_9_segments.bed Writing to file RC_model_9states/WP_9_segments.bed Writing to file RC_model_9states/L3_9_overlap.txt Writing to file RC_model_9states/L3_9_overlap.png Writing to file RC_model_9states/L3_9_overlap.svg Writing to file RC_model_9states/L3_9_RefSeqTES_neighborhood.txt Writing to file RC_model_9states/L3_9_RefSeqTES_neighborhood.png Writing to file RC_model_9states/L3_9_RefSeqTES_neighborhood.svg Writing to file RC_model_9states/L3_9_RefSeqTSS_neighborhood.txt Writing to file RC_model_9states/L3_9_RefSeqTSS_neighborhood.png Writing to file RC_model_9states/L3_9_RefSeqTSS_neighborhood.svg Writing to file RC_model_9states/LP_9_overlap.txt Writing to file RC_model_9states/LP_9_overlap.png Writing to file RC_model_9states/LP_9_overlap.svg Writing to file RC_model_9states/LP_9_RefSeqTES_neighborhood.txt Writing to file RC_model_9states/LP_9_RefSeqTES_neighborhood.png Writing to file RC_model_9states/LP_9_RefSeqTES_neighborhood.svg Writing to file RC_model_9states/LP_9_RefSeqTSS_neighborhood.txt Writing to file RC_model_9states/LP_9_RefSeqTSS_neighborhood.png Writing to file RC_model_9states/LP_9_RefSeqTSS_neighborhood.svg Writing to file RC_model_9states/WP_9_overlap.txt Writing to file RC_model_9states/WP_9_overlap.png Writing to file RC_model_9states/WP_9_overlap.svg Writing to file RC_model_9states/WP_9_RefSeqTES_neighborhood.txt Writing to file RC_model_9states/WP_9_RefSeqTES_neighborhood.png Writing to file RC_model_9states/WP_9_RefSeqTES_neighborhood.svg Writing to file RC_model_9states/WP_9_RefSeqTSS_neighborhood.txt Writing to file RC_model_9states/WP_9_RefSeqTSS_neighborhood.png Writing to file RC_model_9states/WP_9_RefSeqTSS_neighborhood.svg Warning could not automatically open in a browser RC_model_9states/webpage_9.html