ChromHMM Report

Input Directory: outputbinarydir_RNASeq_CHIPSeq/
Output Directory: RC_model_8states
Number of States: 8
Assembly: dm6
Full ChromHMM command: LearnModel -nobrowser -p 4 outputbinarydir_RNASeq_CHIPSeq/ RC_model_8states 8 dm6

Model Parameters


  • Emission Parameter SVG File
  • Emission Parameter Tab-Delimited Text File

  • Transition Parameter SVG File
  • Transition Parameter Tab-Delimited Text File

  • All Model Parameters Tab-Delimited Text File

    Genome Segmentation Files

  • L3_8 Segmentation File (Four Column Bed File)
  • LP_8 Segmentation File (Four Column Bed File)
  • WP_8 Segmentation File (Four Column Bed File)

    State Enrichments

    L3_8 Enrichments


  • L3_8 Overlap Enrichment SVG File
  • L3_8 Overlap Enrichment Tab-Delimited Text File

  • L3_8_RefSeqTES_neighborhood Enrichment SVG File
  • L3_8_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File

  • L3_8_RefSeqTSS_neighborhood Enrichment SVG File
  • L3_8_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File

    LP_8 Enrichments


  • LP_8 Overlap Enrichment SVG File
  • LP_8 Overlap Enrichment Tab-Delimited Text File

  • LP_8_RefSeqTES_neighborhood Enrichment SVG File
  • LP_8_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File

  • LP_8_RefSeqTSS_neighborhood Enrichment SVG File
  • LP_8_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File

    WP_8 Enrichments


  • WP_8 Overlap Enrichment SVG File
  • WP_8 Overlap Enrichment Tab-Delimited Text File

  • WP_8_RefSeqTES_neighborhood Enrichment SVG File
  • WP_8_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File

  • WP_8_RefSeqTSS_neighborhood Enrichment SVG File
  • WP_8_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File