Using 4 threads for Baum-Welch training Writing to file tissue-stage_RC_model_9states/transitions_9.txt Writing to file tissue-stage_RC_model_9states/emissions_9.txt Writing to file tissue-stage_RC_model_9states/emissions_9.svg Writing to file tissue-stage_RC_model_9states/emissions_9.png Writing to file tissue-stage_RC_model_9states/transitions_9.png Writing to file tissue-stage_RC_model_9states/transitions_9.svg Writing to file tissue-stage_RC_model_9states/model_9.txt Iteration Estimated Log Likelihood Change Total Time (secs) 1 -14650379.208 - 9.3 2 -13263989.470 1386389.737 16.8 3 -12908512.281 355477.190 23.9 4 -12730232.895 178279.385 31.3 5 -12662271.235 67961.660 38.6 6 -12631996.718 30274.517 46.1 7 -12605431.638 26565.080 53.6 8 -12575082.166 30349.472 61.2 9 -12547806.826 27275.340 68.6 10 -12528705.223 19101.603 75.9 11 -12513549.501 15155.722 83.1 12 -12503937.616 9611.885 90.8 13 -12498522.326 5415.290 98.1 14 -12495245.731 3276.595 106.5 15 -12493141.394 2104.336 114.1 16 -12491753.699 1387.695 122.0 17 -12490826.921 926.778 129.5 18 -12490200.674 626.247 136.8 19 -12489769.614 431.060 144.3 20 -12489465.540 304.075 151.5 21 -12489245.864 219.676 159.0 22 -12489084.287 161.576 166.6 23 -12488964.483 119.804 173.9 24 -12488875.773 88.711 181.4 25 -12488810.500 65.273 189.0 26 -12488762.797 47.703 196.2 27 -12488728.076 34.721 203.8 28 -12488702.793 25.283 211.2 29 -12488684.279 18.514 218.4 30 -12488670.586 13.694 226.2 31 -12488660.332 10.254 233.5 32 -12488652.566 7.765 241.2 33 -12488646.643 5.923 248.8 34 -12488642.118 4.525 256.0 35 -12488638.677 3.441 263.6 36 -12488636.082 2.595 270.9 37 -12488634.146 1.936 278.9 38 -12488632.719 1.427 286.7 39 -12488631.678 1.041 294.3 40 -12488630.926 0.752 302.3 41 -12488630.386 0.540 309.6 42 -12488630.001 0.385 317.1 43 -12488629.726 0.274 324.7 44 -12488629.531 0.195 332.3 45 -12488629.393 0.139 339.8 46 -12488629.294 0.099 347.1 47 -12488629.223 0.071 354.3 48 -12488629.172 0.051 361.5 49 -12488629.136 0.036 368.7 50 -12488629.110 0.026 376.1 51 -12488629.090 0.019 383.3 52 -12488629.076 0.014 390.7 53 -12488629.066 0.010 397.9 54 -12488629.058 0.008 405.1 55 -12488629.053 0.006 412.7 56 -12488629.048 0.004 420.0 57 -12488629.045 0.003 427.1 58 -12488629.043 0.002 434.6 59 -12488629.041 0.002 442.0 60 -12488629.040 0.001 449.3 61 -12488629.038 0.001 457.0 62 -12488629.038 0.001 464.4 Writing to file tissue-stage_RC_model_9states/antenna_L3_9_segments.bed Writing to file tissue-stage_RC_model_9states/antenna_LP_9_segments.bed Writing to file tissue-stage_RC_model_9states/antenna_WP_9_segments.bed Writing to file tissue-stage_RC_model_9states/eye_L3_9_segments.bed Writing to file tissue-stage_RC_model_9states/eye_LP_9_segments.bed Writing to file tissue-stage_RC_model_9states/eye_WP_9_segments.bed Writing to file tissue-stage_RC_model_9states/leg_L3_9_segments.bed Writing to file tissue-stage_RC_model_9states/leg_LP_9_segments.bed Writing to file tissue-stage_RC_model_9states/leg_WP_9_segments.bed Writing to file tissue-stage_RC_model_9states/wing_L3_9_segments.bed Writing to file tissue-stage_RC_model_9states/wing_LP_9_segments.bed Writing to file tissue-stage_RC_model_9states/wing_WP_9_segments.bed Writing to file tissue-stage_RC_model_9states/antenna_L3_9_overlap.txt Writing to file tissue-stage_RC_model_9states/antenna_L3_9_overlap.png Writing to file tissue-stage_RC_model_9states/antenna_L3_9_overlap.svg Writing to file tissue-stage_RC_model_9states/antenna_L3_9_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_9states/antenna_L3_9_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_9states/antenna_L3_9_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_9states/antenna_L3_9_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_9states/antenna_L3_9_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_9states/antenna_L3_9_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_9states/antenna_LP_9_overlap.txt Writing to file tissue-stage_RC_model_9states/antenna_LP_9_overlap.png Writing to file tissue-stage_RC_model_9states/antenna_LP_9_overlap.svg Writing to file tissue-stage_RC_model_9states/antenna_LP_9_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_9states/antenna_LP_9_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_9states/antenna_LP_9_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_9states/antenna_LP_9_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_9states/antenna_LP_9_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_9states/antenna_LP_9_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_9states/antenna_WP_9_overlap.txt Writing to file tissue-stage_RC_model_9states/antenna_WP_9_overlap.png Writing to file tissue-stage_RC_model_9states/antenna_WP_9_overlap.svg Writing to file tissue-stage_RC_model_9states/antenna_WP_9_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_9states/antenna_WP_9_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_9states/antenna_WP_9_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_9states/antenna_WP_9_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_9states/antenna_WP_9_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_9states/antenna_WP_9_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_9states/eye_L3_9_overlap.txt Writing to file tissue-stage_RC_model_9states/eye_L3_9_overlap.png Writing to file tissue-stage_RC_model_9states/eye_L3_9_overlap.svg Writing to file tissue-stage_RC_model_9states/eye_L3_9_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_9states/eye_L3_9_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_9states/eye_L3_9_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_9states/eye_L3_9_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_9states/eye_L3_9_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_9states/eye_L3_9_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_9states/eye_LP_9_overlap.txt Writing to file tissue-stage_RC_model_9states/eye_LP_9_overlap.png Writing to file tissue-stage_RC_model_9states/eye_LP_9_overlap.svg Writing to file tissue-stage_RC_model_9states/eye_LP_9_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_9states/eye_LP_9_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_9states/eye_LP_9_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_9states/eye_LP_9_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_9states/eye_LP_9_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_9states/eye_LP_9_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_9states/eye_WP_9_overlap.txt Writing to file tissue-stage_RC_model_9states/eye_WP_9_overlap.png Writing to file tissue-stage_RC_model_9states/eye_WP_9_overlap.svg Writing to file tissue-stage_RC_model_9states/eye_WP_9_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_9states/eye_WP_9_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_9states/eye_WP_9_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_9states/eye_WP_9_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_9states/eye_WP_9_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_9states/eye_WP_9_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_9states/leg_L3_9_overlap.txt Writing to file tissue-stage_RC_model_9states/leg_L3_9_overlap.png Writing to file tissue-stage_RC_model_9states/leg_L3_9_overlap.svg Writing to file tissue-stage_RC_model_9states/leg_L3_9_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_9states/leg_L3_9_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_9states/leg_L3_9_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_9states/leg_L3_9_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_9states/leg_L3_9_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_9states/leg_L3_9_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_9states/leg_LP_9_overlap.txt Writing to file tissue-stage_RC_model_9states/leg_LP_9_overlap.png Writing to file tissue-stage_RC_model_9states/leg_LP_9_overlap.svg Writing to file tissue-stage_RC_model_9states/leg_LP_9_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_9states/leg_LP_9_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_9states/leg_LP_9_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_9states/leg_LP_9_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_9states/leg_LP_9_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_9states/leg_LP_9_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_9states/leg_WP_9_overlap.txt Writing to file tissue-stage_RC_model_9states/leg_WP_9_overlap.png Writing to file tissue-stage_RC_model_9states/leg_WP_9_overlap.svg Writing to file tissue-stage_RC_model_9states/leg_WP_9_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_9states/leg_WP_9_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_9states/leg_WP_9_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_9states/leg_WP_9_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_9states/leg_WP_9_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_9states/leg_WP_9_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_9states/wing_L3_9_overlap.txt Writing to file tissue-stage_RC_model_9states/wing_L3_9_overlap.png Writing to file tissue-stage_RC_model_9states/wing_L3_9_overlap.svg Writing to file tissue-stage_RC_model_9states/wing_L3_9_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_9states/wing_L3_9_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_9states/wing_L3_9_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_9states/wing_L3_9_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_9states/wing_L3_9_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_9states/wing_L3_9_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_9states/wing_LP_9_overlap.txt Writing to file tissue-stage_RC_model_9states/wing_LP_9_overlap.png Writing to file tissue-stage_RC_model_9states/wing_LP_9_overlap.svg Writing to file tissue-stage_RC_model_9states/wing_LP_9_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_9states/wing_LP_9_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_9states/wing_LP_9_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_9states/wing_LP_9_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_9states/wing_LP_9_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_9states/wing_LP_9_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_9states/wing_WP_9_overlap.txt Writing to file tissue-stage_RC_model_9states/wing_WP_9_overlap.png Writing to file tissue-stage_RC_model_9states/wing_WP_9_overlap.svg Writing to file tissue-stage_RC_model_9states/wing_WP_9_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_9states/wing_WP_9_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_9states/wing_WP_9_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_9states/wing_WP_9_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_9states/wing_WP_9_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_9states/wing_WP_9_RefSeqTSS_neighborhood.svg Warning could not automatically open in a browser tissue-stage_RC_model_9states/webpage_9.html