ChromHMM Report

Input Directory: outputbinarydir_RNASeq_CHIPSeq_tissue-stage
Output Directory: tissue-stage_RC_model_10states
Number of States: 10
Assembly: dm6
Full ChromHMM command: LearnModel -nobrowser -p 4 outputbinarydir_RNASeq_CHIPSeq_tissue-stage tissue-stage_RC_model_10states 10 dm6

Model Parameters


  • Emission Parameter SVG File
  • Emission Parameter Tab-Delimited Text File

  • Transition Parameter SVG File
  • Transition Parameter Tab-Delimited Text File

  • All Model Parameters Tab-Delimited Text File

    Genome Segmentation Files

  • antenna_L3_10 Segmentation File (Four Column Bed File)
  • antenna_LP_10 Segmentation File (Four Column Bed File)
  • antenna_WP_10 Segmentation File (Four Column Bed File)
  • eye_L3_10 Segmentation File (Four Column Bed File)
  • eye_LP_10 Segmentation File (Four Column Bed File)
  • eye_WP_10 Segmentation File (Four Column Bed File)
  • leg_L3_10 Segmentation File (Four Column Bed File)
  • leg_LP_10 Segmentation File (Four Column Bed File)
  • leg_WP_10 Segmentation File (Four Column Bed File)
  • wing_L3_10 Segmentation File (Four Column Bed File)
  • wing_LP_10 Segmentation File (Four Column Bed File)
  • wing_WP_10 Segmentation File (Four Column Bed File)

    State Enrichments

    antenna_L3_10 Enrichments


  • antenna_L3_10 Overlap Enrichment SVG File
  • antenna_L3_10 Overlap Enrichment Tab-Delimited Text File

  • antenna_L3_10_RefSeqTES_neighborhood Enrichment SVG File
  • antenna_L3_10_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File

  • antenna_L3_10_RefSeqTSS_neighborhood Enrichment SVG File
  • antenna_L3_10_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File

    antenna_LP_10 Enrichments


  • antenna_LP_10 Overlap Enrichment SVG File
  • antenna_LP_10 Overlap Enrichment Tab-Delimited Text File

  • antenna_LP_10_RefSeqTES_neighborhood Enrichment SVG File
  • antenna_LP_10_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File

  • antenna_LP_10_RefSeqTSS_neighborhood Enrichment SVG File
  • antenna_LP_10_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File

    antenna_WP_10 Enrichments


  • antenna_WP_10 Overlap Enrichment SVG File
  • antenna_WP_10 Overlap Enrichment Tab-Delimited Text File

  • antenna_WP_10_RefSeqTES_neighborhood Enrichment SVG File
  • antenna_WP_10_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File

  • antenna_WP_10_RefSeqTSS_neighborhood Enrichment SVG File
  • antenna_WP_10_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File

    eye_L3_10 Enrichments


  • eye_L3_10 Overlap Enrichment SVG File
  • eye_L3_10 Overlap Enrichment Tab-Delimited Text File

  • eye_L3_10_RefSeqTES_neighborhood Enrichment SVG File
  • eye_L3_10_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File

  • eye_L3_10_RefSeqTSS_neighborhood Enrichment SVG File
  • eye_L3_10_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File

    eye_LP_10 Enrichments


  • eye_LP_10 Overlap Enrichment SVG File
  • eye_LP_10 Overlap Enrichment Tab-Delimited Text File

  • eye_LP_10_RefSeqTES_neighborhood Enrichment SVG File
  • eye_LP_10_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File

  • eye_LP_10_RefSeqTSS_neighborhood Enrichment SVG File
  • eye_LP_10_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File

    eye_WP_10 Enrichments


  • eye_WP_10 Overlap Enrichment SVG File
  • eye_WP_10 Overlap Enrichment Tab-Delimited Text File

  • eye_WP_10_RefSeqTES_neighborhood Enrichment SVG File
  • eye_WP_10_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File

  • eye_WP_10_RefSeqTSS_neighborhood Enrichment SVG File
  • eye_WP_10_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File

    leg_L3_10 Enrichments


  • leg_L3_10 Overlap Enrichment SVG File
  • leg_L3_10 Overlap Enrichment Tab-Delimited Text File

  • leg_L3_10_RefSeqTES_neighborhood Enrichment SVG File
  • leg_L3_10_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File

  • leg_L3_10_RefSeqTSS_neighborhood Enrichment SVG File
  • leg_L3_10_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File

    leg_LP_10 Enrichments


  • leg_LP_10 Overlap Enrichment SVG File
  • leg_LP_10 Overlap Enrichment Tab-Delimited Text File

  • leg_LP_10_RefSeqTES_neighborhood Enrichment SVG File
  • leg_LP_10_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File

  • leg_LP_10_RefSeqTSS_neighborhood Enrichment SVG File
  • leg_LP_10_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File

    leg_WP_10 Enrichments


  • leg_WP_10 Overlap Enrichment SVG File
  • leg_WP_10 Overlap Enrichment Tab-Delimited Text File

  • leg_WP_10_RefSeqTES_neighborhood Enrichment SVG File
  • leg_WP_10_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File

  • leg_WP_10_RefSeqTSS_neighborhood Enrichment SVG File
  • leg_WP_10_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File

    wing_L3_10 Enrichments


  • wing_L3_10 Overlap Enrichment SVG File
  • wing_L3_10 Overlap Enrichment Tab-Delimited Text File

  • wing_L3_10_RefSeqTES_neighborhood Enrichment SVG File
  • wing_L3_10_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File

  • wing_L3_10_RefSeqTSS_neighborhood Enrichment SVG File
  • wing_L3_10_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File

    wing_LP_10 Enrichments


  • wing_LP_10 Overlap Enrichment SVG File
  • wing_LP_10 Overlap Enrichment Tab-Delimited Text File

  • wing_LP_10_RefSeqTES_neighborhood Enrichment SVG File
  • wing_LP_10_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File

  • wing_LP_10_RefSeqTSS_neighborhood Enrichment SVG File
  • wing_LP_10_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File

    wing_WP_10 Enrichments


  • wing_WP_10 Overlap Enrichment SVG File
  • wing_WP_10 Overlap Enrichment Tab-Delimited Text File

  • wing_WP_10_RefSeqTES_neighborhood Enrichment SVG File
  • wing_WP_10_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File

  • wing_WP_10_RefSeqTSS_neighborhood Enrichment SVG File
  • wing_WP_10_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File