Using 4 threads for Baum-Welch training Writing to file tissue-stage_RC_model_10states/transitions_10.txt Writing to file tissue-stage_RC_model_10states/emissions_10.txt Writing to file tissue-stage_RC_model_10states/emissions_10.svg Writing to file tissue-stage_RC_model_10states/emissions_10.png Writing to file tissue-stage_RC_model_10states/transitions_10.png Writing to file tissue-stage_RC_model_10states/transitions_10.svg Writing to file tissue-stage_RC_model_10states/model_10.txt Iteration Estimated Log Likelihood Change Total Time (secs) 1 -14442652.065 - 14.3 2 -13061179.703 1381472.363 21.4 3 -12735331.603 325848.100 28.0 4 -12567574.684 167756.919 34.8 5 -12500741.952 66832.732 41.5 6 -12468344.769 32397.183 48.4 7 -12443233.717 25111.052 54.9 8 -12416051.797 27181.920 61.5 9 -12392562.768 23489.029 68.2 10 -12373491.040 19071.729 74.8 11 -12356688.118 16802.922 81.8 12 -12345873.335 10814.782 88.3 13 -12339854.891 6018.444 94.8 14 -12336271.382 3583.510 103.2 15 -12333968.828 2302.554 109.6 16 -12332430.620 1538.208 116.2 17 -12331382.101 1048.519 122.8 18 -12330656.780 725.321 129.3 19 -12330145.981 510.800 136.0 20 -12329777.807 368.174 142.9 21 -12329505.979 271.828 149.4 22 -12329301.194 204.785 155.9 23 -12329144.878 156.316 162.4 24 -12329025.002 119.875 169.0 25 -12328933.253 91.749 175.5 26 -12328863.393 69.860 181.9 27 -12328810.491 52.902 188.7 28 -12328770.606 39.886 195.2 29 -12328740.615 29.991 202.3 30 -12328718.088 22.527 208.9 31 -12328701.158 16.929 215.4 32 -12328688.410 12.749 221.9 33 -12328678.774 9.636 228.7 34 -12328671.452 7.322 235.4 35 -12328665.847 5.604 242.0 36 -12328661.521 4.326 248.6 37 -12328658.152 3.370 255.0 38 -12328655.505 2.647 262.0 39 -12328653.411 2.093 268.5 40 -12328651.749 1.662 275.1 41 -12328650.429 1.320 281.9 42 -12328649.383 1.046 289.0 43 -12328648.558 0.825 295.6 44 -12328647.912 0.646 302.3 45 -12328647.409 0.502 308.9 46 -12328647.022 0.387 315.6 47 -12328646.725 0.297 322.4 48 -12328646.499 0.226 329.0 49 -12328646.329 0.171 335.5 50 -12328646.200 0.129 342.1 51 -12328646.103 0.097 348.8 52 -12328646.031 0.072 355.0 53 -12328645.977 0.054 361.3 54 -12328645.937 0.040 368.0 55 -12328645.907 0.030 374.8 56 -12328645.885 0.022 381.6 57 -12328645.868 0.017 388.0 58 -12328645.856 0.012 394.8 59 -12328645.846 0.009 402.2 60 -12328645.839 0.007 410.8 61 -12328645.834 0.005 417.5 62 -12328645.830 0.004 424.0 63 -12328645.827 0.003 430.6 64 -12328645.825 0.002 437.1 65 -12328645.823 0.002 444.3 66 -12328645.822 0.001 451.0 67 -12328645.821 0.001 458.5 Writing to file tissue-stage_RC_model_10states/antenna_L3_10_segments.bed Writing to file tissue-stage_RC_model_10states/antenna_LP_10_segments.bed Writing to file tissue-stage_RC_model_10states/antenna_WP_10_segments.bed Writing to file tissue-stage_RC_model_10states/eye_L3_10_segments.bed Writing to file tissue-stage_RC_model_10states/eye_LP_10_segments.bed Writing to file tissue-stage_RC_model_10states/eye_WP_10_segments.bed Writing to file tissue-stage_RC_model_10states/leg_L3_10_segments.bed Writing to file tissue-stage_RC_model_10states/leg_LP_10_segments.bed Writing to file tissue-stage_RC_model_10states/leg_WP_10_segments.bed Writing to file tissue-stage_RC_model_10states/wing_L3_10_segments.bed Writing to file tissue-stage_RC_model_10states/wing_LP_10_segments.bed Writing to file tissue-stage_RC_model_10states/wing_WP_10_segments.bed Writing to file tissue-stage_RC_model_10states/antenna_L3_10_overlap.txt Writing to file tissue-stage_RC_model_10states/antenna_L3_10_overlap.png Writing to file tissue-stage_RC_model_10states/antenna_L3_10_overlap.svg Writing to file tissue-stage_RC_model_10states/antenna_L3_10_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_10states/antenna_L3_10_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_10states/antenna_L3_10_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_10states/antenna_L3_10_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_10states/antenna_L3_10_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_10states/antenna_L3_10_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_10states/antenna_LP_10_overlap.txt Writing to file tissue-stage_RC_model_10states/antenna_LP_10_overlap.png Writing to file tissue-stage_RC_model_10states/antenna_LP_10_overlap.svg Writing to file tissue-stage_RC_model_10states/antenna_LP_10_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_10states/antenna_LP_10_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_10states/antenna_LP_10_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_10states/antenna_LP_10_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_10states/antenna_LP_10_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_10states/antenna_LP_10_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_10states/antenna_WP_10_overlap.txt Writing to file tissue-stage_RC_model_10states/antenna_WP_10_overlap.png Writing to file tissue-stage_RC_model_10states/antenna_WP_10_overlap.svg Writing to file tissue-stage_RC_model_10states/antenna_WP_10_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_10states/antenna_WP_10_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_10states/antenna_WP_10_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_10states/antenna_WP_10_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_10states/antenna_WP_10_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_10states/antenna_WP_10_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_10states/eye_L3_10_overlap.txt Writing to file tissue-stage_RC_model_10states/eye_L3_10_overlap.png Writing to file tissue-stage_RC_model_10states/eye_L3_10_overlap.svg Writing to file tissue-stage_RC_model_10states/eye_L3_10_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_10states/eye_L3_10_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_10states/eye_L3_10_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_10states/eye_L3_10_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_10states/eye_L3_10_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_10states/eye_L3_10_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_10states/eye_LP_10_overlap.txt Writing to file tissue-stage_RC_model_10states/eye_LP_10_overlap.png Writing to file tissue-stage_RC_model_10states/eye_LP_10_overlap.svg Writing to file tissue-stage_RC_model_10states/eye_LP_10_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_10states/eye_LP_10_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_10states/eye_LP_10_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_10states/eye_LP_10_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_10states/eye_LP_10_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_10states/eye_LP_10_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_10states/eye_WP_10_overlap.txt Writing to file tissue-stage_RC_model_10states/eye_WP_10_overlap.png Writing to file tissue-stage_RC_model_10states/eye_WP_10_overlap.svg Writing to file tissue-stage_RC_model_10states/eye_WP_10_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_10states/eye_WP_10_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_10states/eye_WP_10_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_10states/eye_WP_10_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_10states/eye_WP_10_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_10states/eye_WP_10_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_10states/leg_L3_10_overlap.txt Writing to file tissue-stage_RC_model_10states/leg_L3_10_overlap.png Writing to file tissue-stage_RC_model_10states/leg_L3_10_overlap.svg Writing to file tissue-stage_RC_model_10states/leg_L3_10_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_10states/leg_L3_10_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_10states/leg_L3_10_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_10states/leg_L3_10_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_10states/leg_L3_10_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_10states/leg_L3_10_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_10states/leg_LP_10_overlap.txt Writing to file tissue-stage_RC_model_10states/leg_LP_10_overlap.png Writing to file tissue-stage_RC_model_10states/leg_LP_10_overlap.svg Writing to file tissue-stage_RC_model_10states/leg_LP_10_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_10states/leg_LP_10_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_10states/leg_LP_10_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_10states/leg_LP_10_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_10states/leg_LP_10_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_10states/leg_LP_10_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_10states/leg_WP_10_overlap.txt Writing to file tissue-stage_RC_model_10states/leg_WP_10_overlap.png Writing to file tissue-stage_RC_model_10states/leg_WP_10_overlap.svg Writing to file tissue-stage_RC_model_10states/leg_WP_10_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_10states/leg_WP_10_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_10states/leg_WP_10_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_10states/leg_WP_10_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_10states/leg_WP_10_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_10states/leg_WP_10_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_10states/wing_L3_10_overlap.txt Writing to file tissue-stage_RC_model_10states/wing_L3_10_overlap.png Writing to file tissue-stage_RC_model_10states/wing_L3_10_overlap.svg Writing to file tissue-stage_RC_model_10states/wing_L3_10_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_10states/wing_L3_10_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_10states/wing_L3_10_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_10states/wing_L3_10_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_10states/wing_L3_10_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_10states/wing_L3_10_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_10states/wing_LP_10_overlap.txt Writing to file tissue-stage_RC_model_10states/wing_LP_10_overlap.png Writing to file tissue-stage_RC_model_10states/wing_LP_10_overlap.svg Writing to file tissue-stage_RC_model_10states/wing_LP_10_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_10states/wing_LP_10_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_10states/wing_LP_10_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_10states/wing_LP_10_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_10states/wing_LP_10_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_10states/wing_LP_10_RefSeqTSS_neighborhood.svg Writing to file tissue-stage_RC_model_10states/wing_WP_10_overlap.txt Writing to file tissue-stage_RC_model_10states/wing_WP_10_overlap.png Writing to file tissue-stage_RC_model_10states/wing_WP_10_overlap.svg Writing to file tissue-stage_RC_model_10states/wing_WP_10_RefSeqTES_neighborhood.txt Writing to file tissue-stage_RC_model_10states/wing_WP_10_RefSeqTES_neighborhood.png Writing to file tissue-stage_RC_model_10states/wing_WP_10_RefSeqTES_neighborhood.svg Writing to file tissue-stage_RC_model_10states/wing_WP_10_RefSeqTSS_neighborhood.txt Writing to file tissue-stage_RC_model_10states/wing_WP_10_RefSeqTSS_neighborhood.png Writing to file tissue-stage_RC_model_10states/wing_WP_10_RefSeqTSS_neighborhood.svg Warning could not automatically open in a browser tissue-stage_RC_model_10states/webpage_10.html