Writing to file model_10states/transitions_10.txt Writing to file model_10states/emissions_10.txt Writing to file model_10states/emissions_10.svg Writing to file model_10states/emissions_10.png Writing to file model_10states/transitions_10.png Writing to file model_10states/transitions_10.svg Writing to file model_10states/model_10.txt Iteration Estimated Log Likelihood Change Total Time (secs) 1 -4021858.843 - 4.3 2 -3576507.052 445351.791 96.4 3 -3460109.103 116397.949 199.5 4 -3389202.728 70906.375 291.0 5 -3363854.607 25348.120 382.4 6 -3356295.515 7559.093 473.8 7 -3352795.909 3499.606 565.1 8 -3349469.434 3326.475 655.9 9 -3344893.439 4575.995 746.3 10 -3337217.154 7676.284 849.6 11 -3320132.345 17084.810 939.8 12 -3295347.669 24784.676 1030.5 13 -3289490.269 5857.400 1120.8 14 -3288048.780 1441.488 1212.6 15 -3287582.963 465.818 1303.2 16 -3287355.632 227.331 1393.9 17 -3287160.310 195.323 1492.4 18 -3286961.207 199.103 1585.4 19 -3286793.220 167.986 1678.7 20 -3286671.123 122.098 1772.0 21 -3286592.556 78.567 1865.1 22 -3286529.863 62.693 1958.3 23 -3286467.740 62.123 2052.0 24 -3286392.533 75.206 2145.1 25 -3286284.796 107.737 2238.8 26 -3286106.450 178.346 2334.9 27 -3285772.976 333.475 2438.6 28 -3285113.391 659.584 2531.5 29 -3283906.176 1207.216 2624.2 30 -3282163.588 1742.588 2716.9 31 -3280207.209 1956.379 2809.6 32 -3278260.893 1946.315 2902.3 33 -3276378.576 1882.317 2995.0 34 -3274651.884 1726.692 3087.7 35 -3273236.220 1415.664 3180.4 36 -3272217.079 1019.141 3273.1 37 -3271551.101 665.979 3365.8 38 -3271131.918 419.182 3458.6 39 -3270863.668 268.250 3551.8 40 -3270682.610 181.058 3644.9 41 -3270550.918 131.692 3738.0 42 -3270447.521 103.397 3831.1 43 -3270360.744 86.777 3924.2 44 -3270283.889 76.855 4017.2 45 -3270212.954 70.935 4110.3 46 -3270145.508 67.446 4203.4 47 -3270080.173 65.335 4296.4 48 -3270016.398 63.775 4389.3 49 -3269954.310 62.088 4482.0 50 -3269894.518 59.792 4575.1 51 -3269837.850 56.668 4667.6 52 -3269785.106 52.745 4768.7 53 -3269736.895 48.211 4860.9 54 -3269693.569 43.325 4952.8 55 -3269655.199 38.370 5045.0 56 -3269621.593 33.606 5136.9 57 -3269592.361 29.232 5229.0 58 -3269566.991 25.371 5321.0 59 -3269544.908 22.083 5413.1 60 -3269525.411 19.497 5501.8 61 -3269507.203 18.208 5587.5 62 -3269489.402 17.801 5673.0 63 -3269474.053 15.349 5758.7 64 -3269461.021 13.033 5844.4 65 -3269449.199 11.822 5930.0 66 -3269438.148 11.051 6015.3 67 -3269427.654 10.494 6100.6 68 -3269417.560 10.094 6186.0 69 -3269407.733 9.827 6271.4 70 -3269398.056 9.677 6356.7 71 -3269388.422 9.634 6442.0 72 -3269378.730 9.692 6527.8 73 -3269368.878 9.851 6613.6 74 -3269358.764 10.114 6698.9 75 -3269348.274 10.490 6784.2 76 -3269337.283 10.991 6864.2 77 -3269325.645 11.638 6943.6 78 -3269313.187 12.458 7022.9 79 -3269299.697 13.490 7102.3 80 -3269284.910 14.787 7181.8 81 -3269268.488 16.422 7261.3 82 -3269249.989 18.499 7340.6 83 -3269228.826 21.163 7419.7 84 -3269204.203 24.623 7499.1 85 -3269175.027 29.176 7578.3 86 -3269139.774 35.253 7657.7 87 -3269096.304 43.470 7737.6 88 -3269041.627 54.677 7817.2 89 -3268971.641 69.986 7896.9 90 -3268881.001 90.640 7976.5 91 -3268763.508 117.493 8055.8 92 -3268613.585 149.923 8135.3 93 -3268429.025 184.560 8215.0 94 -3268212.516 216.509 8294.4 95 -3267969.527 242.989 8374.2 96 -3267705.951 263.576 8454.2 97 -3267427.713 278.237 8534.5 98 -3267141.586 286.128 8614.6 99 -3266855.847 285.738 8694.7 100 -3266580.141 275.706 8774.9 101 -3266324.500 255.642 8875.9 102 -3266097.689 226.811 8981.0 103 -3265905.452 192.237 9087.4 104 -3265749.542 155.910 9167.9 105 -3265628.012 121.530 9248.2 106 -3265536.432 91.580 9327.6 107 -3265469.308 67.125 9407.1 108 -3265421.184 48.124 9487.1 109 -3265387.275 33.909 9567.2 110 -3265363.698 23.577 9647.2 111 -3265347.470 16.228 9726.6 112 -3265336.385 11.085 9806.6 113 -3265328.855 7.530 9886.3 114 -3265323.760 5.095 9965.9 115 -3265320.321 3.439 10055.7 116 -3265318.003 2.317 10136.1 117 -3265316.443 1.561 10216.6 118 -3265315.392 1.051 10297.1 119 -3265314.683 0.709 10377.7 120 -3265314.204 0.478 10458.3 121 -3265313.881 0.324 10539.0 122 -3265313.661 0.220 10619.6 123 -3265313.511 0.150 10700.3 124 -3265313.409 0.102 10781.0 125 -3265313.339 0.070 10861.0 126 -3265313.290 0.049 10940.9 127 -3265313.256 0.034 11021.0 128 -3265313.233 0.024 11101.2 129 -3265313.216 0.017 11181.3 130 -3265313.204 0.012 11261.4 131 -3265313.196 0.008 11341.6 132 -3265313.190 0.006 11426.2 133 -3265313.186 0.004 11506.5 134 -3265313.182 0.003 11586.9 135 -3265313.180 0.002 11667.0 136 -3265313.178 0.002 11746.9 137 -3265313.177 0.001 11827.0 138 -3265313.176 0.001 11908.5 Writing to file model_10states/L3_10_segments.bed Writing to file model_10states/LP_10_segments.bed Writing to file model_10states/WP_10_segments.bed Writing to file model_10states/L3_10_dense.bed Writing to file model_10states/L3_10_expanded.bed Writing to file model_10states/LP_10_dense.bed Writing to file model_10states/LP_10_expanded.bed Writing to file model_10states/WP_10_dense.bed Writing to file model_10states/WP_10_expanded.bed Writing to file model_10states/L3_10_overlap.txt Writing to file model_10states/L3_10_overlap.png Writing to file model_10states/L3_10_overlap.svg Writing to file model_10states/L3_10_RefSeqTES_neighborhood.txt Writing to file model_10states/L3_10_RefSeqTES_neighborhood.png Writing to file model_10states/L3_10_RefSeqTES_neighborhood.svg Writing to file model_10states/L3_10_RefSeqTSS_neighborhood.txt Writing to file model_10states/L3_10_RefSeqTSS_neighborhood.png Writing to file model_10states/L3_10_RefSeqTSS_neighborhood.svg Writing to file model_10states/LP_10_overlap.txt Writing to file model_10states/LP_10_overlap.png Writing to file model_10states/LP_10_overlap.svg Writing to file model_10states/LP_10_RefSeqTES_neighborhood.txt Writing to file model_10states/LP_10_RefSeqTES_neighborhood.png Writing to file model_10states/LP_10_RefSeqTES_neighborhood.svg Writing to file model_10states/LP_10_RefSeqTSS_neighborhood.txt Writing to file model_10states/LP_10_RefSeqTSS_neighborhood.png Writing to file model_10states/LP_10_RefSeqTSS_neighborhood.svg Writing to file model_10states/WP_10_overlap.txt Writing to file model_10states/WP_10_overlap.png Writing to file model_10states/WP_10_overlap.svg Writing to file model_10states/WP_10_RefSeqTES_neighborhood.txt Writing to file model_10states/WP_10_RefSeqTES_neighborhood.png Writing to file model_10states/WP_10_RefSeqTES_neighborhood.svg Writing to file model_10states/WP_10_RefSeqTSS_neighborhood.txt Writing to file model_10states/WP_10_RefSeqTSS_neighborhood.png Writing to file model_10states/WP_10_RefSeqTSS_neighborhood.svg Warning could not automatically open in a browser model_10states/webpage_10.html