Using 4 threads for Baum-Welch training Writing to file RC_model_10states/transitions_10.txt Writing to file RC_model_10states/emissions_10.txt Writing to file RC_model_10states/emissions_10.svg Writing to file RC_model_10states/emissions_10.png Writing to file RC_model_10states/transitions_10.png Writing to file RC_model_10states/transitions_10.svg Writing to file RC_model_10states/model_10.txt Iteration Estimated Log Likelihood Change Total Time (secs) 1 -4564328.767 - 4.7 2 -4120774.664 443554.103 7.4 3 -4009531.403 111243.260 9.8 4 -3939918.703 69612.700 12.3 5 -3886410.112 53508.591 14.6 6 -3851649.593 34760.519 17.1 7 -3826075.869 25573.724 19.2 8 -3804647.201 21428.668 21.8 9 -3786945.158 17702.043 24.0 10 -3777991.624 8953.534 25.9 11 -3774047.657 3943.967 27.9 12 -3771661.083 2386.574 30.1 13 -3769470.736 2190.347 32.0 14 -3766966.617 2504.119 34.4 15 -3763939.470 3027.147 36.5 16 -3760106.566 3832.904 38.6 17 -3755253.690 4852.876 40.8 18 -3749702.783 5550.907 43.2 19 -3744283.344 5419.439 46.0 20 -3739653.303 4630.041 48.6 21 -3735785.513 3867.790 50.7 22 -3732111.224 3674.289 52.6 23 -3727677.379 4433.845 54.7 24 -3721129.886 6547.493 57.0 25 -3711794.088 9335.798 59.3 26 -3697518.404 14275.684 61.6 27 -3679055.714 18462.690 63.7 28 -3673786.032 5269.682 66.0 29 -3671215.554 2570.479 67.9 30 -3669283.965 1931.589 69.9 31 -3667428.678 1855.287 72.1 32 -3665223.301 2205.377 74.2 33 -3663473.573 1749.727 76.5 34 -3662646.856 826.718 78.8 35 -3662167.585 479.271 80.7 36 -3661915.681 251.904 83.0 37 -3661750.509 165.172 85.1 38 -3661599.739 150.771 87.3 39 -3661445.509 154.230 89.5 40 -3661284.553 160.956 91.7 41 -3661121.633 162.920 94.1 42 -3660965.371 156.262 96.4 43 -3660823.952 141.420 98.4 44 -3660701.599 122.352 100.5 45 -3660598.693 102.906 102.7 46 -3660513.548 85.145 104.9 47 -3660443.788 69.760 107.1 48 -3660386.998 56.789 109.1 49 -3660340.973 46.025 111.5 50 -3660303.789 37.185 113.7 51 -3660273.811 29.978 116.0 52 -3660249.678 24.133 117.9 53 -3660230.269 19.409 120.2 54 -3660214.666 15.603 122.6 55 -3660202.127 12.540 124.7 56 -3660192.049 10.078 126.9 57 -3660183.948 8.101 129.1 58 -3660177.435 6.513 131.4 59 -3660172.197 5.238 133.5 60 -3660167.982 4.215 135.6 61 -3660164.590 3.393 137.9 62 -3660161.857 2.732 140.0 63 -3660159.656 2.201 142.3 64 -3660157.881 1.775 144.3 65 -3660156.450 1.431 146.5 66 -3660155.295 1.155 148.7 67 -3660154.363 0.932 151.0 68 -3660153.610 0.753 153.5 69 -3660153.001 0.609 155.7 70 -3660152.509 0.492 157.6 71 -3660152.111 0.398 159.8 72 -3660151.789 0.322 161.9 73 -3660151.528 0.261 164.1 74 -3660151.316 0.212 166.2 75 -3660151.145 0.172 168.3 76 -3660151.005 0.139 170.5 77 -3660150.892 0.113 172.7 78 -3660150.800 0.092 174.9 79 -3660150.725 0.075 177.4 80 -3660150.664 0.061 179.7 81 -3660150.614 0.050 181.8 82 -3660150.573 0.041 183.8 83 -3660150.539 0.034 186.1 84 -3660150.512 0.028 188.5 85 -3660150.489 0.023 190.6 86 -3660150.470 0.019 192.6 87 -3660150.455 0.015 194.5 88 -3660150.442 0.013 196.8 89 -3660150.431 0.011 198.7 90 -3660150.422 0.009 200.7 91 -3660150.415 0.008 203.1 92 -3660150.408 0.006 205.0 93 -3660150.403 0.005 207.4 94 -3660150.398 0.005 209.6 95 -3660150.394 0.004 211.9 96 -3660150.391 0.003 213.9 97 -3660150.388 0.003 216.1 98 -3660150.385 0.003 218.3 99 -3660150.383 0.002 220.5 100 -3660150.381 0.002 222.7 101 -3660150.379 0.002 224.9 102 -3660150.377 0.002 227.4 103 -3660150.376 0.001 229.4 104 -3660150.375 0.001 231.7 105 -3660150.373 0.001 233.9 106 -3660150.372 0.001 236.3 107 -3660150.371 0.001 238.3 108 -3660150.370 0.001 240.4 Writing to file RC_model_10states/L3_10_segments.bed Writing to file RC_model_10states/LP_10_segments.bed Writing to file RC_model_10states/WP_10_segments.bed Writing to file RC_model_10states/L3_10_overlap.txt Writing to file RC_model_10states/L3_10_overlap.png Writing to file RC_model_10states/L3_10_overlap.svg Writing to file RC_model_10states/L3_10_RefSeqTES_neighborhood.txt Writing to file RC_model_10states/L3_10_RefSeqTES_neighborhood.png Writing to file RC_model_10states/L3_10_RefSeqTES_neighborhood.svg Writing to file RC_model_10states/L3_10_RefSeqTSS_neighborhood.txt Writing to file RC_model_10states/L3_10_RefSeqTSS_neighborhood.png Writing to file RC_model_10states/L3_10_RefSeqTSS_neighborhood.svg Writing to file RC_model_10states/LP_10_overlap.txt Writing to file RC_model_10states/LP_10_overlap.png Writing to file RC_model_10states/LP_10_overlap.svg Writing to file RC_model_10states/LP_10_RefSeqTES_neighborhood.txt Writing to file RC_model_10states/LP_10_RefSeqTES_neighborhood.png Writing to file RC_model_10states/LP_10_RefSeqTES_neighborhood.svg Writing to file RC_model_10states/LP_10_RefSeqTSS_neighborhood.txt Writing to file RC_model_10states/LP_10_RefSeqTSS_neighborhood.png Writing to file RC_model_10states/LP_10_RefSeqTSS_neighborhood.svg Writing to file RC_model_10states/WP_10_overlap.txt Writing to file RC_model_10states/WP_10_overlap.png Writing to file RC_model_10states/WP_10_overlap.svg Writing to file RC_model_10states/WP_10_RefSeqTES_neighborhood.txt Writing to file RC_model_10states/WP_10_RefSeqTES_neighborhood.png Writing to file RC_model_10states/WP_10_RefSeqTES_neighborhood.svg Writing to file RC_model_10states/WP_10_RefSeqTSS_neighborhood.txt Writing to file RC_model_10states/WP_10_RefSeqTSS_neighborhood.png Writing to file RC_model_10states/WP_10_RefSeqTSS_neighborhood.svg Warning could not automatically open in a browser RC_model_10states/webpage_10.html