Using 4 threads for Baum-Welch training
Writing to file RC_model_10states/transitions_10.txt
Writing to file RC_model_10states/emissions_10.txt
Writing to file RC_model_10states/emissions_10.svg
Writing to file RC_model_10states/emissions_10.png
Writing to file RC_model_10states/transitions_10.png
Writing to file RC_model_10states/transitions_10.svg
Writing to file RC_model_10states/model_10.txt
Iteration Estimated Log Likelihood Change Total Time (secs)
1 -4564328.767 - 4.7
2 -4120774.664 443554.103 7.4
3 -4009531.403 111243.260 9.8
4 -3939918.703 69612.700 12.3
5 -3886410.112 53508.591 14.6
6 -3851649.593 34760.519 17.1
7 -3826075.869 25573.724 19.2
8 -3804647.201 21428.668 21.8
9 -3786945.158 17702.043 24.0
10 -3777991.624 8953.534 25.9
11 -3774047.657 3943.967 27.9
12 -3771661.083 2386.574 30.1
13 -3769470.736 2190.347 32.0
14 -3766966.617 2504.119 34.4
15 -3763939.470 3027.147 36.5
16 -3760106.566 3832.904 38.6
17 -3755253.690 4852.876 40.8
18 -3749702.783 5550.907 43.2
19 -3744283.344 5419.439 46.0
20 -3739653.303 4630.041 48.6
21 -3735785.513 3867.790 50.7
22 -3732111.224 3674.289 52.6
23 -3727677.379 4433.845 54.7
24 -3721129.886 6547.493 57.0
25 -3711794.088 9335.798 59.3
26 -3697518.404 14275.684 61.6
27 -3679055.714 18462.690 63.7
28 -3673786.032 5269.682 66.0
29 -3671215.554 2570.479 67.9
30 -3669283.965 1931.589 69.9
31 -3667428.678 1855.287 72.1
32 -3665223.301 2205.377 74.2
33 -3663473.573 1749.727 76.5
34 -3662646.856 826.718 78.8
35 -3662167.585 479.271 80.7
36 -3661915.681 251.904 83.0
37 -3661750.509 165.172 85.1
38 -3661599.739 150.771 87.3
39 -3661445.509 154.230 89.5
40 -3661284.553 160.956 91.7
41 -3661121.633 162.920 94.1
42 -3660965.371 156.262 96.4
43 -3660823.952 141.420 98.4
44 -3660701.599 122.352 100.5
45 -3660598.693 102.906 102.7
46 -3660513.548 85.145 104.9
47 -3660443.788 69.760 107.1
48 -3660386.998 56.789 109.1
49 -3660340.973 46.025 111.5
50 -3660303.789 37.185 113.7
51 -3660273.811 29.978 116.0
52 -3660249.678 24.133 117.9
53 -3660230.269 19.409 120.2
54 -3660214.666 15.603 122.6
55 -3660202.127 12.540 124.7
56 -3660192.049 10.078 126.9
57 -3660183.948 8.101 129.1
58 -3660177.435 6.513 131.4
59 -3660172.197 5.238 133.5
60 -3660167.982 4.215 135.6
61 -3660164.590 3.393 137.9
62 -3660161.857 2.732 140.0
63 -3660159.656 2.201 142.3
64 -3660157.881 1.775 144.3
65 -3660156.450 1.431 146.5
66 -3660155.295 1.155 148.7
67 -3660154.363 0.932 151.0
68 -3660153.610 0.753 153.5
69 -3660153.001 0.609 155.7
70 -3660152.509 0.492 157.6
71 -3660152.111 0.398 159.8
72 -3660151.789 0.322 161.9
73 -3660151.528 0.261 164.1
74 -3660151.316 0.212 166.2
75 -3660151.145 0.172 168.3
76 -3660151.005 0.139 170.5
77 -3660150.892 0.113 172.7
78 -3660150.800 0.092 174.9
79 -3660150.725 0.075 177.4
80 -3660150.664 0.061 179.7
81 -3660150.614 0.050 181.8
82 -3660150.573 0.041 183.8
83 -3660150.539 0.034 186.1
84 -3660150.512 0.028 188.5
85 -3660150.489 0.023 190.6
86 -3660150.470 0.019 192.6
87 -3660150.455 0.015 194.5
88 -3660150.442 0.013 196.8
89 -3660150.431 0.011 198.7
90 -3660150.422 0.009 200.7
91 -3660150.415 0.008 203.1
92 -3660150.408 0.006 205.0
93 -3660150.403 0.005 207.4
94 -3660150.398 0.005 209.6
95 -3660150.394 0.004 211.9
96 -3660150.391 0.003 213.9
97 -3660150.388 0.003 216.1
98 -3660150.385 0.003 218.3
99 -3660150.383 0.002 220.5
100 -3660150.381 0.002 222.7
101 -3660150.379 0.002 224.9
102 -3660150.377 0.002 227.4
103 -3660150.376 0.001 229.4
104 -3660150.375 0.001 231.7
105 -3660150.373 0.001 233.9
106 -3660150.372 0.001 236.3
107 -3660150.371 0.001 238.3
108 -3660150.370 0.001 240.4
Writing to file RC_model_10states/L3_10_segments.bed
Writing to file RC_model_10states/LP_10_segments.bed
Writing to file RC_model_10states/WP_10_segments.bed
Writing to file RC_model_10states/L3_10_overlap.txt
Writing to file RC_model_10states/L3_10_overlap.png
Writing to file RC_model_10states/L3_10_overlap.svg
Writing to file RC_model_10states/L3_10_RefSeqTES_neighborhood.txt
Writing to file RC_model_10states/L3_10_RefSeqTES_neighborhood.png
Writing to file RC_model_10states/L3_10_RefSeqTES_neighborhood.svg
Writing to file RC_model_10states/L3_10_RefSeqTSS_neighborhood.txt
Writing to file RC_model_10states/L3_10_RefSeqTSS_neighborhood.png
Writing to file RC_model_10states/L3_10_RefSeqTSS_neighborhood.svg
Writing to file RC_model_10states/LP_10_overlap.txt
Writing to file RC_model_10states/LP_10_overlap.png
Writing to file RC_model_10states/LP_10_overlap.svg
Writing to file RC_model_10states/LP_10_RefSeqTES_neighborhood.txt
Writing to file RC_model_10states/LP_10_RefSeqTES_neighborhood.png
Writing to file RC_model_10states/LP_10_RefSeqTES_neighborhood.svg
Writing to file RC_model_10states/LP_10_RefSeqTSS_neighborhood.txt
Writing to file RC_model_10states/LP_10_RefSeqTSS_neighborhood.png
Writing to file RC_model_10states/LP_10_RefSeqTSS_neighborhood.svg
Writing to file RC_model_10states/WP_10_overlap.txt
Writing to file RC_model_10states/WP_10_overlap.png
Writing to file RC_model_10states/WP_10_overlap.svg
Writing to file RC_model_10states/WP_10_RefSeqTES_neighborhood.txt
Writing to file RC_model_10states/WP_10_RefSeqTES_neighborhood.png
Writing to file RC_model_10states/WP_10_RefSeqTES_neighborhood.svg
Writing to file RC_model_10states/WP_10_RefSeqTSS_neighborhood.txt
Writing to file RC_model_10states/WP_10_RefSeqTSS_neighborhood.png
Writing to file RC_model_10states/WP_10_RefSeqTSS_neighborhood.svg
Warning could not automatically open in a browser RC_model_10states/webpage_10.html