Basic Statistics
Measure | Value |
---|---|
Filename | mouse_brain_rep1_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 100000 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGT | 2277 | 2.2769999999999997 | Illumina Paired End PCR Primer 2 (100% over 50bp) |
GGCGCCTCTGATCAAGTCCGCACAAACCTTCTCCAGCGACTTCACGTTGC | 185 | 0.185 | No Hit |
GCTGCATGCAAATCTTTTTTACTTCATCTCCAGTCAGGGCATACTTAAGT | 175 | 0.17500000000000002 | No Hit |
GCGCCTCTGATCAAGTCCGCACAAACCTTCTCCAGCGACTTCACGTTGCG | 162 | 0.16199999999999998 | No Hit |
GCGCCATCCATTTTCAGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACA | 152 | 0.152 | No Hit |
CGCTGCATGCAAATCTTTTTTACTTCATCTCCAGTCAGGGCATACTTAAG | 140 | 0.13999999999999999 | No Hit |
GTCCGCGAACAACCTGAACTTCGTCATCCTTCCGAATGGGCATAGACCGA | 124 | 0.124 | No Hit |
CCGGGGATCCTTCTCGTCTAGCGTCAACAGCTCCCGGGCCGCCTTACGGA | 122 | 0.122 | No Hit |
CGGGGATCCTTCTCGTCTAGCGTCAACAGCTCCCGGGCCGCCTTACGGAT | 117 | 0.117 | No Hit |
AGACGATTTATTCAGTTGTCTTAGGCATCTGCAATGGTGACTTCAACCTC | 114 | 0.11399999999999999 | No Hit |
CGCCTCTGATCAAGTCCGCACAAACCTTCTCCAGCGACTTCACGTTGCGG | 107 | 0.107 | No Hit |
CGGCCGCTCCCGTCCCGTTCCGTTCCGACTGCCGGCGACGGCCGGGTATG | 102 | 0.10200000000000001 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCGGT | 385 | 0.0 | 61.66526 | 9 |
AAGAGCG | 395 | 0.0 | 60.104115 | 7 |
GATCGGA | 400 | 0.0 | 59.412228 | 1 |
AGAGCGG | 400 | 0.0 | 59.352814 | 8 |
TCGGGGC | 25 | 0.0049954923 | 57.03574 | 2 |
ATCGGAA | 425 | 0.0 | 55.91739 | 2 |
TCGGAAG | 430 | 0.0 | 55.26719 | 3 |
TACCGCG | 35 | 2.7670298E-4 | 54.319748 | 1 |
CGGAAGA | 445 | 0.0 | 53.35084 | 4 |
ACCGCGG | 40 | 5.347894E-4 | 47.529778 | 2 |
GAAGAGC | 515 | 0.0 | 46.099274 | 6 |
ATGCCGT | 260 | 0.0 | 45.65601 | 44-45 |
TGCCGTC | 255 | 0.0 | 45.6202 | 44-45 |
GCCGTCT | 265 | 0.0 | 44.794575 | 46-47 |
TCGTATG | 260 | 0.0 | 44.74289 | 40-41 |
CTCGTAT | 250 | 0.0 | 44.633312 | 38-39 |
CGTATGC | 260 | 0.0 | 43.82977 | 40-41 |
TATGCCG | 260 | 0.0 | 43.82977 | 42-43 |
TCTCGTA | 255 | 0.0 | 43.758152 | 38-39 |
CCGTCTT | 275 | 0.0 | 42.30237 | 46-47 |