# Super track info track ChIP-seq superTrack on show shortLabel ChIP-seq longLabel ChIP-seq visibility 0 # Parent track info track ChIP-seq.histoneMarks.bw dragAndDrop subTracks compositeTrack on shortLabel ChIP-seq.histoneMarks.bw longLabel ChIP-Seq - histone marks - pile-up and fold-change signal parent ChIP-seq type bigWig viewLimits 0:80 autoScale on maxHeightPixels 30 visibility 0 subGroup1 mark mark \ H3K27ac=H3K27ac \ H3K27me3=H3K27me3 \ H3K36me3=H3K36me3 \ H3K4me1=H3K4me1 \ H3K4me2=H3K4me2 \ H3K4me3=H3K4me3 \ H3K9ac=H3K9ac \ H3K9me3=H3K9me3; subGroup2 time_point time_point \ Day0=Day0 \ Day10=Day10 \ Day11=Day11 \ Day12=Day12 \ Day13=Day13 \ Day14=Day14 \ Day15=Day15 \ Day16=Day16; subGroup3 view view \ foldChangeSignal=foldChangeSignal \ pileupSignal=pileupSignal; subGroup4 replicate replicate \ 1=1 \ 2=2; sortOrder mark=+ time_point=+ view=+ replicate=+ dimensions dimX=mark dimY=time_point dimA=view dimB=replicate track midbrainDay0H3K27acX1.fc_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/mbrain/ChIP-Seq.files/midbrainDay0H3K27acX1.fc_signal.bw shortLabel "midbrainDay0H3K27acX1,foldChangeSignal" parent ChIP-seq.histoneMarks.bw color 99,0,57 type bigWig subGroups mark=H3K27ac time_point=Day0 view=foldChangeSignal replicate=1 track midbrainDay0H3K27acX1.pileup_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/mbrain/ChIP-Seq.files/midbrainDay0H3K27acX1.pileup_signal.bw shortLabel "midbrainDay0H3K27acX1,pileupSignal" parent ChIP-seq.histoneMarks.bw color 99,0,57 type bigWig subGroups mark=H3K27ac time_point=Day0 view=pileupSignal replicate=1 track midbrainDay0H3K27acX2.fc_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/mbrain/ChIP-Seq.files/midbrainDay0H3K27acX2.fc_signal.bw shortLabel "midbrainDay0H3K27acX2,foldChangeSignal" parent ChIP-seq.histoneMarks.bw color 99,0,57 type bigWig subGroups mark=H3K27ac time_point=Day0 view=foldChangeSignal replicate=2 track midbrainDay0H3K27acX2.pileup_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/mbrain/ChIP-Seq.files/midbrainDay0H3K27acX2.pileup_signal.bw shortLabel "midbrainDay0H3K27acX2,pileupSignal" parent ChIP-seq.histoneMarks.bw color 99,0,57 type bigWig subGroups mark=H3K27ac time_point=Day0 view=pileupSignal replicate=2 track midbrainDay0H3K27me3X1.fc_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/mbrain/ChIP-Seq.files/midbrainDay0H3K27me3X1.fc_signal.bw shortLabel "midbrainDay0H3K27me3X1,foldChangeSignal" parent ChIP-seq.histoneMarks.bw color 29,41,118 type bigWig subGroups mark=H3K27me3 time_point=Day0 view=foldChangeSignal replicate=1 track midbrainDay0H3K27me3X1.pileup_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/mbrain/ChIP-Seq.files/midbrainDay0H3K27me3X1.pileup_signal.bw shortLabel "midbrainDay0H3K27me3X1,pileupSignal" parent ChIP-seq.histoneMarks.bw color 29,41,118 type bigWig subGroups mark=H3K27me3 time_point=Day0 view=pileupSignal replicate=1 track midbrainDay0H3K27me3X2.fc_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/mbrain/ChIP-Seq.files/midbrainDay0H3K27me3X2.fc_signal.bw shortLabel "midbrainDay0H3K27me3X2,foldChangeSignal" parent ChIP-seq.histoneMarks.bw color 29,41,118 type bigWig subGroups mark=H3K27me3 time_point=Day0 view=foldChangeSignal replicate=2 track midbrainDay0H3K27me3X2.pileup_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/mbrain/ChIP-Seq.files/midbrainDay0H3K27me3X2.pileup_signal.bw shortLabel "midbrainDay0H3K27me3X2,pileupSignal" parent ChIP-seq.histoneMarks.bw color 29,41,118 type bigWig subGroups mark=H3K27me3 time_point=Day0 view=pileupSignal replicate=2 track midbrainDay0H3K36me3X1.fc_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/mbrain/ChIP-Seq.files/midbrainDay0H3K36me3X1.fc_signal.bw shortLabel "midbrainDay0H3K36me3X1,foldChangeSignal" parent ChIP-seq.histoneMarks.bw color 127,188,65 type bigWig subGroups mark=H3K36me3 time_point=Day0 view=foldChangeSignal replicate=1 track midbrainDay0H3K36me3X1.pileup_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/mbrain/ChIP-Seq.files/midbrainDay0H3K36me3X1.pileup_signal.bw shortLabel "midbrainDay0H3K36me3X1,pileupSignal" parent ChIP-seq.histoneMarks.bw color 127,188,65 type bigWig subGroups mark=H3K36me3 time_point=Day0 view=pileupSignal replicate=1 track midbrainDay0H3K36me3X2.fc_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/mbrain/ChIP-Seq.files/midbrainDay0H3K36me3X2.fc_signal.bw shortLabel "midbrainDay0H3K36me3X2,foldChangeSignal" parent ChIP-seq.histoneMarks.bw color 127,188,65 type bigWig subGroups mark=H3K36me3 time_point=Day0 view=foldChangeSignal replicate=2 track midbrainDay0H3K36me3X2.pileup_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/mbrain/ChIP-Seq.files/midbrainDay0H3K36me3X2.pileup_signal.bw shortLabel "midbrainDay0H3K36me3X2,pileupSignal" parent ChIP-seq.histoneMarks.bw color 127,188,65 type bigWig subGroups mark=H3K36me3 time_point=Day0 view=pileupSignal replicate=2 track midbrainDay0H3K4me1X1.fc_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/mbrain/ChIP-Seq.files/midbrainDay0H3K4me1X1.fc_signal.bw shortLabel "midbrainDay0H3K4me1X1,foldChangeSignal" parent ChIP-seq.histoneMarks.bw color 229,171,0 type bigWig subGroups mark=H3K4me1 time_point=Day0 view=foldChangeSignal replicate=1 track midbrainDay0H3K4me1X1.pileup_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/mbrain/ChIP-Seq.files/midbrainDay0H3K4me1X1.pileup_signal.bw shortLabel "midbrainDay0H3K4me1X1,pileupSignal" parent ChIP-seq.histoneMarks.bw color 229,171,0 type bigWig subGroups mark=H3K4me1 time_point=Day0 view=pileupSignal replicate=1 track midbrainDay0H3K4me1X2.fc_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/mbrain/ChIP-Seq.files/midbrainDay0H3K4me1X2.fc_signal.bw shortLabel "midbrainDay0H3K4me1X2,foldChangeSignal" parent ChIP-seq.histoneMarks.bw color 229,171,0 type bigWig subGroups mark=H3K4me1 time_point=Day0 view=foldChangeSignal replicate=2 track midbrainDay0H3K4me1X2.pileup_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/mbrain/ChIP-Seq.files/midbrainDay0H3K4me1X2.pileup_signal.bw shortLabel "midbrainDay0H3K4me1X2,pileupSignal" parent ChIP-seq.histoneMarks.bw color 229,171,0 type bigWig subGroups mark=H3K4me1 time_point=Day0 view=pileupSignal replicate=2 track midbrainDay0H3K4me2X1.fc_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/mbrain/ChIP-Seq.files/midbrainDay0H3K4me2X1.fc_signal.bw shortLabel "midbrainDay0H3K4me2X1,foldChangeSignal" parent ChIP-seq.histoneMarks.bw color 166,124,0 type bigWig subGroups mark=H3K4me2 time_point=Day0 view=foldChangeSignal replicate=1 track midbrainDay0H3K4me2X1.pileup_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/mbrain/ChIP-Seq.files/midbrainDay0H3K4me2X1.pileup_signal.bw shortLabel "midbrainDay0H3K4me2X1,pileupSignal" parent ChIP-seq.histoneMarks.bw color 166,124,0 type bigWig subGroups mark=H3K4me2 time_point=Day0 view=pileupSignal replicate=1 track midbrainDay0H3K4me2X2.fc_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/mbrain/ChIP-Seq.files/midbrainDay0H3K4me2X2.fc_signal.bw shortLabel "midbrainDay0H3K4me2X2,foldChangeSignal" parent ChIP-seq.histoneMarks.bw color 166,124,0 type bigWig subGroups mark=H3K4me2 time_point=Day0 view=foldChangeSignal replicate=2 track midbrainDay0H3K4me2X2.pileup_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/mbrain/ChIP-Seq.files/midbrainDay0H3K4me2X2.pileup_signal.bw shortLabel "midbrainDay0H3K4me2X2,pileupSignal" parent ChIP-seq.histoneMarks.bw color 166,124,0 type bigWig subGroups mark=H3K4me2 time_point=Day0 view=pileupSignal replicate=2 track midbrainDay0H3K4me3X1.fc_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/mbrain/ChIP-Seq.files/midbrainDay0H3K4me3X1.fc_signal.bw shortLabel "midbrainDay0H3K4me3X1,foldChangeSignal" parent ChIP-seq.histoneMarks.bw color 209,153,185 type bigWig subGroups mark=H3K4me3 time_point=Day0 view=foldChangeSignal replicate=1 track midbrainDay0H3K4me3X1.pileup_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/mbrain/ChIP-Seq.files/midbrainDay0H3K4me3X1.pileup_signal.bw shortLabel "midbrainDay0H3K4me3X1,pileupSignal" parent ChIP-seq.histoneMarks.bw color 209,153,185 type bigWig subGroups mark=H3K4me3 time_point=Day0 view=pileupSignal replicate=1 track midbrainDay0H3K4me3X2.fc_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/mbrain/ChIP-Seq.files/midbrainDay0H3K4me3X2.fc_signal.bw shortLabel "midbrainDay0H3K4me3X2,foldChangeSignal" parent ChIP-seq.histoneMarks.bw color 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167,173,212 type bigWig subGroups mark=H3K9me3 time_point=Day16 view=pileupSignal replicate=1 track midbrainDay16.5H3K9me3X2.fc_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/mbrain/ChIP-Seq.files/midbrainDay16.5H3K9me3X2.fc_signal.bw shortLabel "midbrainDay16.5H3K9me3X2,foldChangeSignal" parent ChIP-seq.histoneMarks.bw color 167,173,212 type bigWig subGroups mark=H3K9me3 time_point=Day16 view=foldChangeSignal replicate=2 track midbrainDay16.5H3K9me3X2.pileup_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/mbrain/ChIP-Seq.files/midbrainDay16.5H3K9me3X2.pileup_signal.bw shortLabel "midbrainDay16.5H3K9me3X2,pileupSignal" parent ChIP-seq.histoneMarks.bw color 167,173,212 type bigWig subGroups mark=H3K9me3 time_point=Day16 view=pileupSignal replicate=2 # Parent track info track ChIP-seq.histoneMarks.bigBed dragAndDrop subTracks compositeTrack on shortLabel ChIP-seq.histoneMarks.bigBed longLabel ChIP-Seq - histone marks - peak calls parent ChIP-seq type bigBed 4 viewLimits 0:80 autoScale on maxHeightPixels 30 visibility 0 subGroup1 mark mark \ H3K27ac=H3K27ac \ H3K27me3=H3K27me3 \ H3K36me3=H3K36me3 \ H3K4me1=H3K4me1 \ H3K4me2=H3K4me2 \ H3K4me3=H3K4me3 \ H3K9ac=H3K9ac \ H3K9me3=H3K9me3; subGroup2 time_point time_point \ Day0=Day0 \ Day10=Day10 \ Day11=Day11 \ Day12=Day12 \ Day13=Day13 \ Day14=Day14 \ Day15=Day15 \ Day16=Day16; subGroup3 view view \ ZeronePeaks=ZeronePeaks; sortOrder mark=+ time_point=+ view=+ dimensions dimX=mark dimY=time_point dimA=view track midbrainDay0H3K27ac_zerone_merged.bed.bb bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/mbrain/ChIP-Seq.files/midbrainDay0H3K27ac_zerone_merged.bed.bb shortLabel "midbrainDay0H3K27ac,ZeronePeaks" parent ChIP-seq.histoneMarks.bigBed color 99,0,57 type bigBed 4 subGroups mark=H3K27ac time_point=Day0 view=ZeronePeaks track midbrainDay0H3K27me3_zerone_merged.bed.bb bigDataUrl 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track midbrainDay11.5H3K4me2_zerone_merged.bed.bb bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/mbrain/ChIP-Seq.files/midbrainDay11.5H3K4me2_zerone_merged.bed.bb shortLabel "midbrainDay11.5H3K4me2,ZeronePeaks" parent ChIP-seq.histoneMarks.bigBed color 166,124,0 type bigBed 4 subGroups mark=H3K4me2 time_point=Day11 view=ZeronePeaks track midbrainDay11.5H3K4me3_zerone_merged.bed.bb bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/mbrain/ChIP-Seq.files/midbrainDay11.5H3K4me3_zerone_merged.bed.bb shortLabel "midbrainDay11.5H3K4me3,ZeronePeaks" parent ChIP-seq.histoneMarks.bigBed color 209,153,185 type bigBed 4 subGroups mark=H3K4me3 time_point=Day11 view=ZeronePeaks track midbrainDay11.5H3K9ac_zerone_merged.bed.bb bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/mbrain/ChIP-Seq.files/midbrainDay11.5H3K9ac_zerone_merged.bed.bb shortLabel "midbrainDay11.5H3K9ac,ZeronePeaks" parent ChIP-seq.histoneMarks.bigBed color 175,77,133 type bigBed 4 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