# Super track info track ChIP-seq superTrack on show shortLabel ChIP-seq longLabel ChIP-seq visibility 0 # Parent track info track ChIP-seq.histoneMarks.bw dragAndDrop subTracks compositeTrack on shortLabel ChIP-seq.histoneMarks.bw longLabel ChIP-Seq - histone marks - pile-up signal parent ChIP-seq type bigWig viewLimits 0:80 autoScale on maxHeightPixels 30 visibility 0 subGroup1 mark mark \ H3K27ac=H3K27ac \ H3K4me3=H3K4me3; subGroup2 stage stage \ ESC=ESC \ NPC=NPC \ Neuron=Neuron; subGroup3 view view \ pileupSignal=pileupSignal; subGroup4 replicate replicate \ 1=1 \ 2=2; sortOrder mark=+ stage=+ view=+ replicate=+ dimensions dimX=mark dimY=stage dimA=replicate dimB=view track ESCH3K27acX1.pileup_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/ESCH3K27acX1.pileup_signal.bw shortLabel "ESCH3K27acX1,pileupSignal" parent ChIP-seq.histoneMarks.bw color 99,0,57 type bigWig subGroups mark=H3K27ac stage=ESC view=pileupSignal replicate=1 track ESCH3K27acX2.pileup_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/ESCH3K27acX2.pileup_signal.bw shortLabel "ESCH3K27acX2,pileupSignal" parent ChIP-seq.histoneMarks.bw color 99,0,57 type bigWig subGroups mark=H3K27ac stage=ESC view=pileupSignal replicate=2 track ESCH3K4me3X1.pileup_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/ESCH3K4me3X1.pileup_signal.bw shortLabel "ESCH3K4me3X1,pileupSignal" parent ChIP-seq.histoneMarks.bw color 29,41,118 type bigWig subGroups mark=H3K4me3 stage=ESC view=pileupSignal replicate=1 track ESCH3K4me3X2.pileup_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/ESCH3K4me3X2.pileup_signal.bw shortLabel "ESCH3K4me3X2,pileupSignal" parent ChIP-seq.histoneMarks.bw color 29,41,118 type bigWig subGroups mark=H3K4me3 stage=ESC view=pileupSignal replicate=2 track NPCH3K27acX1.pileup_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/NPCH3K27acX1.pileup_signal.bw shortLabel "NPCH3K27acX1,pileupSignal" parent ChIP-seq.histoneMarks.bw color 99,0,57 type bigWig subGroups mark=H3K27ac stage=NPC view=pileupSignal replicate=1 track NPCH3K27acX2.pileup_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/NPCH3K27acX2.pileup_signal.bw shortLabel "NPCH3K27acX2,pileupSignal" parent ChIP-seq.histoneMarks.bw color 99,0,57 type bigWig subGroups mark=H3K27ac stage=NPC view=pileupSignal replicate=2 track NPCH3K4me3X1.pileup_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/NPCH3K4me3X1.pileup_signal.bw shortLabel "NPCH3K4me3X1,pileupSignal" parent ChIP-seq.histoneMarks.bw color 29,41,118 type bigWig subGroups mark=H3K4me3 stage=NPC view=pileupSignal replicate=1 track NPCH3K4me3X2.pileup_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/NPCH3K4me3X2.pileup_signal.bw shortLabel "NPCH3K4me3X2,pileupSignal" parent ChIP-seq.histoneMarks.bw color 29,41,118 type bigWig subGroups mark=H3K4me3 stage=NPC view=pileupSignal replicate=2 track NeuronH3K27acX1.pileup_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/NeuronH3K27acX1.pileup_signal.bw shortLabel "NeuronH3K27acX1,pileupSignal" parent ChIP-seq.histoneMarks.bw color 99,0,57 type bigWig subGroups mark=H3K27ac stage=Neuron view=pileupSignal replicate=1 track NeuronH3K27acX2.pileup_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/NeuronH3K27acX2.pileup_signal.bw shortLabel "NeuronH3K27acX2,pileupSignal" parent ChIP-seq.histoneMarks.bw color 99,0,57 type bigWig subGroups mark=H3K27ac stage=Neuron view=pileupSignal replicate=2 track NeuronH3K4me3X1.pileup_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/NeuronH3K4me3X1.pileup_signal.bw shortLabel "NeuronH3K4me3X1,pileupSignal" parent ChIP-seq.histoneMarks.bw color 29,41,118 type bigWig subGroups mark=H3K4me3 stage=Neuron view=pileupSignal replicate=1 track NeuronH3K4me3X2.pileup_signal.bw bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/NeuronH3K4me3X2.pileup_signal.bw shortLabel "NeuronH3K4me3X2,pileupSignal" parent ChIP-seq.histoneMarks.bw color 29,41,118 type bigWig subGroups mark=H3K4me3 stage=Neuron view=pileupSignal replicate=2 # Parent track info track ChIP-seq.histoneMarks.bigBed.with.input dragAndDrop subTracks compositeTrack on shortLabel ChIP-seq.histoneMarks.bigBed.with.input longLabel ChIP-Seq - histone marks - narrowPeaks with input parent ChIP-seq type bigBed 4 viewLimits 0:80 autoScale on maxHeightPixels 30 visibility 0 subGroup1 mark mark \ H3K27ac=H3K27ac \ H3K4me3=H3K4me3; subGroup2 stage stage \ ESC=ESC \ NPC=NPC \ Neuron=Neuron; subGroup3 view view \ NarrowPeaks=NarrowPeaks; subGroup4 replicate replicate \ 1=1 \ 2=2; sortOrder mark=+ stage=+ view=+ replicate=+ dimensions dimX=mark dimY=stage dimA=replicate dimB=view track ESCH3K27acX1_peaks.bb bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/with.input/ESCH3K27acX1_peaks.bb shortLabel "ESCH3K27acX1,NarrowPeaks" parent ChIP-seq.histoneMarks.bigBed.with.input color 99,0,57 type bigBed 4 subGroups mark=H3K27ac stage=ESC view=NarrowPeaks replicate=1 track ESCH3K27acX2_peaks.bb bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/with.input/ESCH3K27acX2_peaks.bb shortLabel "ESCH3K27acX2,NarrowPeaks" parent ChIP-seq.histoneMarks.bigBed.with.input color 99,0,57 type bigBed 4 subGroups mark=H3K27ac stage=ESC view=NarrowPeaks replicate=2 track ESCH3K4me3X1_peaks.bb bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/with.input/ESCH3K4me3X1_peaks.bb shortLabel "ESCH3K4me3X1,NarrowPeaks" parent ChIP-seq.histoneMarks.bigBed.with.input color 29,41,118 type bigBed 4 subGroups mark=H3K4me3 stage=ESC view=NarrowPeaks replicate=1 track ESCH3K4me3X2_peaks.bb bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/with.input/ESCH3K4me3X2_peaks.bb shortLabel "ESCH3K4me3X2,NarrowPeaks" parent ChIP-seq.histoneMarks.bigBed.with.input color 29,41,118 type bigBed 4 subGroups mark=H3K4me3 stage=ESC view=NarrowPeaks replicate=2 track NPCH3K27acX1_peaks.bb bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/with.input/NPCH3K27acX1_peaks.bb shortLabel "NPCH3K27acX1,NarrowPeaks" parent ChIP-seq.histoneMarks.bigBed.with.input color 99,0,57 type bigBed 4 subGroups mark=H3K27ac stage=NPC view=NarrowPeaks replicate=1 track NPCH3K27acX2_peaks.bb bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/with.input/NPCH3K27acX2_peaks.bb shortLabel "NPCH3K27acX2,NarrowPeaks" parent ChIP-seq.histoneMarks.bigBed.with.input color 99,0,57 type bigBed 4 subGroups mark=H3K27ac stage=NPC view=NarrowPeaks replicate=2 track NPCH3K4me3X1_peaks.bb bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/with.input/NPCH3K4me3X1_peaks.bb shortLabel "NPCH3K4me3X1,NarrowPeaks" parent ChIP-seq.histoneMarks.bigBed.with.input color 29,41,118 type bigBed 4 subGroups mark=H3K4me3 stage=NPC view=NarrowPeaks replicate=1 track NPCH3K4me3X2_peaks.bb bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/with.input/NPCH3K4me3X2_peaks.bb shortLabel "NPCH3K4me3X2,NarrowPeaks" parent ChIP-seq.histoneMarks.bigBed.with.input color 29,41,118 type bigBed 4 subGroups mark=H3K4me3 stage=NPC view=NarrowPeaks replicate=2 track NeuronH3K27acX1_peaks.bb bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/with.input/NeuronH3K27acX1_peaks.bb shortLabel "NeuronH3K27acX1,NarrowPeaks" parent ChIP-seq.histoneMarks.bigBed.with.input color 99,0,57 type bigBed 4 subGroups mark=H3K27ac stage=Neuron view=NarrowPeaks replicate=1 track NeuronH3K27acX2_peaks.bb bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/with.input/NeuronH3K27acX2_peaks.bb shortLabel "NeuronH3K27acX2,NarrowPeaks" parent ChIP-seq.histoneMarks.bigBed.with.input color 99,0,57 type bigBed 4 subGroups mark=H3K27ac stage=Neuron view=NarrowPeaks replicate=2 track NeuronH3K4me3X1_peaks.bb bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/with.input/NeuronH3K4me3X1_peaks.bb shortLabel "NeuronH3K4me3X1,NarrowPeaks" parent ChIP-seq.histoneMarks.bigBed.with.input color 29,41,118 type bigBed 4 subGroups mark=H3K4me3 stage=Neuron view=NarrowPeaks replicate=1 track NeuronH3K4me3X2_peaks.bb bigDataUrl https://public-docs.crg.es/rguigo/Data/bborsari/hubs/intronic_enhancers_hub/ChIP-Seq.files/with.input/NeuronH3K4me3X2_peaks.bb shortLabel "NeuronH3K4me3X2,NarrowPeaks" parent ChIP-seq.histoneMarks.bigBed.with.input color 29,41,118 type bigBed 4 subGroups mark=H3K4me3 stage=Neuron view=NarrowPeaks replicate=2