FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | 6492_ACTTGA_R1.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 144586011 |
| Filtered Sequences | 0 |
| Sequence length | 100 |
| %GC | 48 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AAAAA | 41566780 | 3.4011734 | 4.5948586 | 9 |
| TCTTC | 45338960 | 2.782374 | 5.8695335 | 7 |
| CCAGG | 31798110 | 2.7270186 | 5.7701554 | 2 |
| TTCTT | 48159820 | 2.6504748 | 5.3385744 | 6 |
| CTCCA | 33056370 | 2.5027292 | 8.03188 | 1 |
| CTTCA | 36411795 | 2.472269 | 5.766959 | 6 |
| CCAGC | 28698460 | 2.4419334 | 5.5201416 | 2 |
| TCCAG | 31603950 | 2.4116352 | 6.6198463 | 2 |
| CAGCT | 31516530 | 2.404964 | 5.2583685 | 3 |
| GGCAG | 27471625 | 2.374557 | 10.658869 | 1 |
| CAGGA | 27618875 | 2.35016 | 5.1147404 | 3 |
| CTCCT | 33483570 | 2.2912936 | 5.8589973 | 1 |
| GCCAG | 25324750 | 2.1718605 | 10.993977 | 1 |
| CTGCT | 31471945 | 2.1706214 | 5.2670174 | 3 |
| CCCAG | 25382030 | 2.1597407 | 6.624692 | 1 |
| GGCTG | 27298085 | 2.1326556 | 7.9276214 | 1 |
| GCTGG | 27171390 | 2.1227574 | 6.1303697 | 1 |
| CCACA | 25041615 | 2.0976388 | 5.31345 | 2 |
| CCTGG | 25359320 | 1.9656881 | 5.0439878 | 1 |
| GGCCA | 22871440 | 1.9614638 | 7.794882 | 1 |
| GGGCA | 21679395 | 1.8738958 | 6.7685413 | 1 |
| CCAGA | 21454045 | 1.8112947 | 5.2292204 | 2 |
| GGGAG | 20588775 | 1.7936608 | 6.388923 | 1 |
| GGGGG | 19923930 | 1.7631598 | 9.062192 | 1 |
| GGGGC | 19609890 | 1.7217906 | 6.7036357 | 1 |
| GCTCC | 21628250 | 1.6633624 | 5.0045576 | 1 |
| GCCAC | 19399315 | 1.6506752 | 7.440298 | 1 |
| GGGGA | 18804685 | 1.6382338 | 6.8828325 | 1 |
| CCCCA | 19397825 | 1.6376338 | 5.479548 | 1 |
| GCCTG | 19831550 | 1.5372117 | 6.704945 | 1 |
| GGCCT | 19600365 | 1.5192919 | 5.1829963 | 1 |
| GCCTC | 19451620 | 1.4959644 | 5.599126 | 1 |
| GCCCA | 17352865 | 1.4765441 | 6.816486 | 1 |
| GTGGG | 18595480 | 1.4642239 | 6.345846 | 1 |
| GTCCA | 18824780 | 1.4364817 | 8.961891 | 1 |
| GGGGT | 17685810 | 1.3925956 | 6.775823 | 1 |
| GCCAA | 15983265 | 1.3494145 | 5.2154293 | 1 |
| GTCTG | 18771820 | 1.3049034 | 5.884554 | 1 |
| GTCAG | 16846330 | 1.2956479 | 6.549535 | 1 |
| GCCAT | 16837010 | 1.2847989 | 5.200864 | 1 |
| GTCCT | 17845320 | 1.2307924 | 6.8139725 | 1 |
| GCCCT | 14416170 | 1.1087034 | 5.0746813 | 1 |