FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | 6494_GGCTAC_R2.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 131737035 |
| Filtered Sequences | 0 |
| Sequence length | 100 |
| %GC | 47 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TTTTT | 43712735 | 3.7649431 | 5.747354 | 2 |
| GAAGA | 46770735 | 2.9161208 | 6.866651 | 2 |
| GGAAG | 30964365 | 2.165463 | 6.3811436 | 1 |
| GAAAA | 35773515 | 1.9885455 | 5.612055 | 2 |
| GGAGA | 27648135 | 1.9335457 | 5.232977 | 1 |
| GGAAA | 28961090 | 1.8057026 | 6.1433105 | 1 |
| GTGGA | 22616590 | 1.766536 | 5.1828914 | 1 |
| GTTTT | 18023335 | 1.5589644 | 5.4554796 | 1 |
| GTTTG | 14668230 | 1.2741756 | 5.204695 | 1 |