FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | 6491_ATCACG_R1.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 135218638 |
| Filtered Sequences | 0 |
| Sequence length | 100 |
| %GC | 48 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AAAAA | 41038400 | 3.4397523 | 4.5798454 | 9 |
| CCAGG | 30123565 | 2.787739 | 5.692462 | 2 |
| TCTTC | 42092110 | 2.7784522 | 6.1312575 | 7 |
| TTCTT | 44047750 | 2.599359 | 5.5596905 | 6 |
| CTCCA | 31393635 | 2.5428123 | 7.953108 | 1 |
| CCAGC | 26916970 | 2.4647067 | 5.447944 | 2 |
| CTTCA | 34034645 | 2.464531 | 6.198888 | 6 |
| TCCAG | 29833015 | 2.4421735 | 6.5753307 | 2 |
| CAGCT | 29594335 | 2.4226346 | 5.37533 | 3 |
| GGCAG | 25331175 | 2.3692327 | 10.256397 | 1 |
| CAGGA | 25870380 | 2.3480082 | 5.1165576 | 3 |
| CTCCT | 31582200 | 2.3318698 | 5.775187 | 1 |
| GCCAG | 23779665 | 2.2006526 | 11.039944 | 1 |
| CTGCT | 29278065 | 2.1847963 | 5.176238 | 3 |
| GGAGG | 23092050 | 2.182838 | 5.0357943 | 1 |
| CCCAG | 23656375 | 2.1661434 | 6.4722886 | 1 |
| GCTGG | 25336895 | 2.160205 | 5.9483094 | 1 |
| GGCTG | 25184815 | 2.1472387 | 7.069738 | 1 |
| CCTGG | 23867955 | 2.0134928 | 5.6774864 | 1 |
| GGCCA | 21478430 | 1.9876883 | 7.3643875 | 1 |
| TCCAC | 23565855 | 1.9087802 | 5.1168017 | 2 |
| GGGCA | 20016200 | 1.8721212 | 6.422111 | 1 |
| CTCTG | 24657535 | 1.8400016 | 5.054084 | 1 |
| GGGAG | 19147735 | 1.8099909 | 6.5506816 | 1 |
| GGGGG | 18432310 | 1.7955368 | 8.678848 | 1 |
| GGGGC | 18157300 | 1.7500851 | 6.089531 | 1 |
| GCCAC | 17948590 | 1.6434989 | 7.2705626 | 1 |
| GGGGA | 17330995 | 1.6382587 | 6.865631 | 1 |
| CCCCA | 18072440 | 1.637379 | 5.2583847 | 1 |
| GGCCT | 18496385 | 1.560349 | 5.0157843 | 1 |
| GCCTG | 18434975 | 1.5551685 | 6.447894 | 1 |
| GCCTC | 18183420 | 1.5177625 | 5.5182734 | 1 |
| TTCAA | 21369990 | 1.5176388 | 5.127586 | 7 |
| GTGGG | 17238055 | 1.4853761 | 6.221287 | 1 |
| GCCCA | 16196980 | 1.4831092 | 6.492145 | 1 |
| GTCCA | 17911145 | 1.466232 | 9.660069 | 1 |
| GGGGT | 16185450 | 1.3946748 | 6.509046 | 1 |
| GCCTT | 17854290 | 1.3323281 | 5.0198956 | 1 |
| GCCAA | 14667630 | 1.3171952 | 5.203409 | 1 |
| GCCAT | 16058450 | 1.3145678 | 5.4617934 | 1 |
| GTCAG | 15828945 | 1.309598 | 7.351038 | 1 |
| GTCTG | 17171460 | 1.2950377 | 5.9114585 | 1 |
| GTCCT | 16725370 | 1.2480854 | 6.9752707 | 1 |
| GCCCT | 13487790 | 1.1258203 | 5.0011444 | 1 |