STAR version=2.7.1a STAR compilation time,server,dir=vie jun 21 18:03:03 CEST 2019 ant-login8.linux.crg.es:/software/mi/el7.2/software/STAR-2.7.1a/source ##### DEFAULT parameters: versionGenome 2.7.1a parametersFiles - sysShell - runMode alignReads runThreadN 1 runDirPerm User_RWX runRNGseed 777 genomeDir ./GenomeDir/ genomeLoad NoSharedMemory genomeFastaFiles - genomeChainFiles - genomeSAindexNbases 14 genomeChrBinNbits 18 genomeSAsparseD 1 genomeSuffixLengthMax 18446744073709551615 genomeFileSizes 0 genomeConsensusFile - readFilesType Fastx readFilesIn Read1 Read2 readFilesPrefix - readFilesCommand - readMatesLengthsIn NotEqual readMapNumber 18446744073709551615 readNameSeparator / inputBAMfile - bamRemoveDuplicatesType - bamRemoveDuplicatesMate2basesN 0 limitGenomeGenerateRAM 31000000000 limitIObufferSize 150000000 limitOutSAMoneReadBytes 100000 limitOutSJcollapsed 1000000 limitOutSJoneRead 1000 limitBAMsortRAM 0 limitSjdbInsertNsj 1000000 limitNreadsSoft 18446744073709551615 outTmpDir - outTmpKeep None outStd Log outReadsUnmapped None outQSconversionAdd 0 outMultimapperOrder Old_2.4 outSAMtype SAM outSAMmode Full outSAMstrandField None outSAMattributes Standard outSAMunmapped None outSAMorder Paired outSAMprimaryFlag OneBestScore outSAMreadID Standard outSAMmapqUnique 255 outSAMflagOR 0 outSAMflagAND 65535 outSAMattrRGline - outSAMheaderHD - outSAMheaderPG - outSAMheaderCommentFile - outBAMcompression 1 outBAMsortingThreadN 0 outBAMsortingBinsN 50 outSAMfilter None outSAMmultNmax 18446744073709551615 outSAMattrIHstart 1 outSAMtlen 1 outSJfilterReads All outSJfilterCountUniqueMin 3 1 1 1 outSJfilterCountTotalMin 3 1 1 1 outSJfilterOverhangMin 30 12 12 12 outSJfilterDistToOtherSJmin 10 0 5 10 outSJfilterIntronMaxVsReadN 50000 100000 200000 outWigType None outWigStrand Stranded outWigReferencesPrefix - outWigNorm RPM outFilterType Normal outFilterMultimapNmax 10 outFilterMultimapScoreRange 1 outFilterScoreMin 0 outFilterScoreMinOverLread 0.66 outFilterMatchNmin 0 outFilterMatchNminOverLread 0.66 outFilterMismatchNmax 10 outFilterMismatchNoverLmax 0.3 outFilterMismatchNoverReadLmax 1 outFilterIntronMotifs None outFilterIntronStrands RemoveInconsistentStrands clip5pNbases 0 clip3pNbases 0 clip3pAfterAdapterNbases 0 clip3pAdapterSeq - clip3pAdapterMMp 0.1 winBinNbits 16 winAnchorDistNbins 9 winFlankNbins 4 winAnchorMultimapNmax 50 winReadCoverageRelativeMin 0.5 winReadCoverageBasesMin 0 scoreGap 0 scoreGapNoncan -8 scoreGapGCAG -4 scoreGapATAC -8 scoreStitchSJshift 1 scoreGenomicLengthLog2scale -0.25 scoreDelBase -2 scoreDelOpen -2 scoreInsOpen -2 scoreInsBase -2 seedSearchLmax 0 seedSearchStartLmax 50 seedSearchStartLmaxOverLread 1 seedPerReadNmax 1000 seedPerWindowNmax 50 seedNoneLociPerWindow 10 seedMultimapNmax 10000 seedSplitMin 12 alignIntronMin 21 alignIntronMax 0 alignMatesGapMax 0 alignTranscriptsPerReadNmax 10000 alignSJoverhangMin 5 alignSJDBoverhangMin 3 alignSJstitchMismatchNmax 0 -1 0 0 alignSplicedMateMapLmin 0 alignSplicedMateMapLminOverLmate 0.66 alignWindowsPerReadNmax 10000 alignTranscriptsPerWindowNmax 100 alignEndsType Local alignSoftClipAtReferenceEnds Yes alignEndsProtrude 0 ConcordantPair alignInsertionFlush None peOverlapNbasesMin 0 peOverlapMMp 0.01 chimSegmentMin 0 chimScoreMin 0 chimScoreDropMax 20 chimScoreSeparation 10 chimScoreJunctionNonGTAG -1 chimMainSegmentMultNmax 10 chimJunctionOverhangMin 20 chimOutType Junctions chimFilter banGenomicN chimSegmentReadGapMax 0 chimMultimapNmax 0 chimMultimapScoreRange 1 chimNonchimScoreDropMin 20 chimOutJunctionFormat 0 sjdbFileChrStartEnd - sjdbGTFfile - sjdbGTFchrPrefix - sjdbGTFfeatureExon exon sjdbGTFtagExonParentTranscript transcript_id sjdbGTFtagExonParentGene gene_id sjdbGTFtagExonParentGeneName gene_name sjdbGTFtagExonParentGeneType gene_type gene_biotype sjdbOverhang 100 sjdbScore 2 sjdbInsertSave Basic varVCFfile - waspOutputMode None quantMode - quantTranscriptomeBAMcompression 1 quantTranscriptomeBan IndelSoftclipSingleend twopass1readsN 18446744073709551615 twopassMode None soloType None soloCBstart 1 soloUMIstart 17 soloCBlen 16 soloUMIlen 10 soloBarcodeReadLength 1 soloCBwhitelist - soloStrand Forward soloOutFileNames Solo.out/ genes.tsv barcodes.tsv matrix.mtx matrixSJ.mtx matrixGeneFull.mtx soloFeatures Gene soloUMIdedup 1MM_All ##### Command Line: STAR --runMode genomeGenerate --runThreadN 10 --genomeDir GRCm38 --genomeFastaFiles genome.fa --outFileNamePrefix GRCm38 --sjdbGTFfile genes.gtf --sjdbOverhang 99 ##### Initial USER parameters from Command Line: outFileNamePrefix GRCm38 ###### All USER parameters from Command Line: runMode genomeGenerate ~RE-DEFINED runThreadN 10 ~RE-DEFINED genomeDir GRCm38 ~RE-DEFINED genomeFastaFiles genome.fa ~RE-DEFINED outFileNamePrefix GRCm38 ~RE-DEFINED sjdbGTFfile genes.gtf ~RE-DEFINED sjdbOverhang 99 ~RE-DEFINED ##### Finished reading parameters from all sources ##### Final user re-defined parameters-----------------: runMode genomeGenerate runThreadN 10 genomeDir GRCm38 genomeFastaFiles genome.fa outFileNamePrefix GRCm38 sjdbGTFfile genes.gtf sjdbOverhang 99 ------------------------------- ##### Final effective command line: STAR --runMode genomeGenerate --runThreadN 10 --genomeDir GRCm38 --genomeFastaFiles genome.fa --outFileNamePrefix GRCm38 --sjdbGTFfile genes.gtf --sjdbOverhang 99 ##### Final parameters after user input--------------------------------: versionGenome 2.7.1a parametersFiles - sysShell - runMode genomeGenerate runThreadN 10 runDirPerm User_RWX runRNGseed 777 genomeDir GRCm38 genomeLoad NoSharedMemory genomeFastaFiles genome.fa genomeChainFiles - genomeSAindexNbases 14 genomeChrBinNbits 18 genomeSAsparseD 1 genomeSuffixLengthMax 18446744073709551615 genomeFileSizes 0 genomeConsensusFile - readFilesType Fastx readFilesIn Read1 Read2 readFilesPrefix - readFilesCommand - readMatesLengthsIn NotEqual readMapNumber 18446744073709551615 readNameSeparator / inputBAMfile - bamRemoveDuplicatesType - bamRemoveDuplicatesMate2basesN 0 limitGenomeGenerateRAM 31000000000 limitIObufferSize 150000000 limitOutSAMoneReadBytes 100000 limitOutSJcollapsed 1000000 limitOutSJoneRead 1000 limitBAMsortRAM 0 limitSjdbInsertNsj 1000000 limitNreadsSoft 18446744073709551615 outFileNamePrefix GRCm38 outTmpDir - outTmpKeep None outStd Log outReadsUnmapped None outQSconversionAdd 0 outMultimapperOrder Old_2.4 outSAMtype SAM outSAMmode Full outSAMstrandField None outSAMattributes Standard outSAMunmapped None outSAMorder Paired outSAMprimaryFlag OneBestScore outSAMreadID Standard outSAMmapqUnique 255 outSAMflagOR 0 outSAMflagAND 65535 outSAMattrRGline - outSAMheaderHD - outSAMheaderPG - outSAMheaderCommentFile - outBAMcompression 1 outBAMsortingThreadN 0 outBAMsortingBinsN 50 outSAMfilter None outSAMmultNmax 18446744073709551615 outSAMattrIHstart 1 outSAMtlen 1 outSJfilterReads All outSJfilterCountUniqueMin 3 1 1 1 outSJfilterCountTotalMin 3 1 1 1 outSJfilterOverhangMin 30 12 12 12 outSJfilterDistToOtherSJmin 10 0 5 10 outSJfilterIntronMaxVsReadN 50000 100000 200000 outWigType None outWigStrand Stranded outWigReferencesPrefix - outWigNorm RPM outFilterType Normal outFilterMultimapNmax 10 outFilterMultimapScoreRange 1 outFilterScoreMin 0 outFilterScoreMinOverLread 0.66 outFilterMatchNmin 0 outFilterMatchNminOverLread 0.66 outFilterMismatchNmax 10 outFilterMismatchNoverLmax 0.3 outFilterMismatchNoverReadLmax 1 outFilterIntronMotifs None outFilterIntronStrands RemoveInconsistentStrands clip5pNbases 0 clip3pNbases 0 clip3pAfterAdapterNbases 0 clip3pAdapterSeq - clip3pAdapterMMp 0.1 winBinNbits 16 winAnchorDistNbins 9 winFlankNbins 4 winAnchorMultimapNmax 50 winReadCoverageRelativeMin 0.5 winReadCoverageBasesMin 0 scoreGap 0 scoreGapNoncan -8 scoreGapGCAG -4 scoreGapATAC -8 scoreStitchSJshift 1 scoreGenomicLengthLog2scale -0.25 scoreDelBase -2 scoreDelOpen -2 scoreInsOpen -2 scoreInsBase -2 seedSearchLmax 0 seedSearchStartLmax 50 seedSearchStartLmaxOverLread 1 seedPerReadNmax 1000 seedPerWindowNmax 50 seedNoneLociPerWindow 10 seedMultimapNmax 10000 seedSplitMin 12 alignIntronMin 21 alignIntronMax 0 alignMatesGapMax 0 alignTranscriptsPerReadNmax 10000 alignSJoverhangMin 5 alignSJDBoverhangMin 3 alignSJstitchMismatchNmax 0 -1 0 0 alignSplicedMateMapLmin 0 alignSplicedMateMapLminOverLmate 0.66 alignWindowsPerReadNmax 10000 alignTranscriptsPerWindowNmax 100 alignEndsType Local alignSoftClipAtReferenceEnds Yes alignEndsProtrude 0 ConcordantPair alignInsertionFlush None peOverlapNbasesMin 0 peOverlapMMp 0.01 chimSegmentMin 0 chimScoreMin 0 chimScoreDropMax 20 chimScoreSeparation 10 chimScoreJunctionNonGTAG -1 chimMainSegmentMultNmax 10 chimJunctionOverhangMin 20 chimOutType Junctions chimFilter banGenomicN chimSegmentReadGapMax 0 chimMultimapNmax 0 chimMultimapScoreRange 1 chimNonchimScoreDropMin 20 chimOutJunctionFormat 0 sjdbFileChrStartEnd - sjdbGTFfile genes.gtf sjdbGTFchrPrefix - sjdbGTFfeatureExon exon sjdbGTFtagExonParentTranscript transcript_id sjdbGTFtagExonParentGene gene_id sjdbGTFtagExonParentGeneName gene_name sjdbGTFtagExonParentGeneType gene_type gene_biotype sjdbOverhang 99 sjdbScore 2 sjdbInsertSave Basic varVCFfile - waspOutputMode None quantMode - quantTranscriptomeBAMcompression 1 quantTranscriptomeBan IndelSoftclipSingleend twopass1readsN 18446744073709551615 twopassMode None soloType None soloCBstart 1 soloUMIstart 17 soloCBlen 16 soloUMIlen 10 soloBarcodeReadLength 1 soloCBwhitelist - soloStrand Forward soloOutFileNames Solo.out/ genes.tsv barcodes.tsv matrix.mtx matrixSJ.mtx matrixGeneFull.mtx soloFeatures Gene soloUMIdedup 1MM_All ---------------------------------------- Finished loading and checking parameters Feb 08 20:32:36 ... starting to generate Genome files genome.fa : chr # 0 "10" chrStart: 0 genome.fa : chr # 1 "11" chrStart: 130809856 genome.fa : chr # 2 "12" chrStart: 252968960 genome.fa : chr # 3 "13" chrStart: 373293056 genome.fa : chr # 4 "14" chrStart: 493879296 genome.fa : chr # 5 "15" chrStart: 618921984 genome.fa : chr # 6 "16" chrStart: 722993152 genome.fa : chr # 7 "17" chrStart: 821297152 genome.fa : chr # 8 "18" chrStart: 916455424 genome.fa : chr # 9 "19" chrStart: 1007419392 genome.fa : chr # 10 "1" chrStart: 1069023232 genome.fa : chr # 11 "2" chrStart: 1264582656 genome.fa : chr # 12 "3" chrStart: 1446772736 genome.fa : chr # 13 "4" chrStart: 1606942720 genome.fa : chr # 14 "5" chrStart: 1763704832 genome.fa : chr # 15 "6" chrStart: 1915748352 genome.fa : chr # 16 "7" chrStart: 2065694720 genome.fa : chr # 17 "8" chrStart: 2211184640 genome.fa : chr # 18 "9" chrStart: 2340683776 genome.fa : chr # 19 "MT" chrStart: 2465464320 genome.fa : chr # 20 "X" chrStart: 2465726464 genome.fa : chr # 21 "Y" chrStart: 2636906496 Estimated genome size=2927656896 2728656896 199000000 GstrandBit=32 Number of SA indices: 5295075460 Feb 08 20:34:28 ... starting to sort Suffix Array. This may take a long time... Number of chunks: 30; chunks size limit: 1532559968 bytes Feb 08 20:34:45 ... sorting Suffix Array chunks and saving them to disk... Writing 1338488880 bytes into GRCm38/SA_1 ; empty space on disk = 2366490564100096 bytes ... done Writing 1365465000 bytes into GRCm38/SA_2 ; empty space on disk = 2366488894767104 bytes ...Writing 1375656936 bytes into GRCm38/SA_4 ; empty space on disk = 2366488894767104 bytes ... done done Writing 1410312312 bytes into GRCm38/SA_0 ; empty space on disk = 2366485675638784 bytes ...Writing 1416266832 bytes into GRCm38/SA_7 ; empty space on disk = 2366485675638784 bytes ...Writing 1431541504 bytes into GRCm38/SA_5 ; empty space on disk = 2366485675638784 bytes ...Writing 1412469928 bytes into GRCm38/SA_6 ; empty space on disk = 2366485675638784 bytes ...Writing 1437471616 bytes into GRCm38/SA_8 ; empty space on disk = 2366485675638784 bytes ...Writing 1456901464 bytes into GRCm38/SA_3 ; empty space on disk = 2366485675638784 bytes ... done done done done done done Writing 1465656776 bytes into GRCm38/SA_9 ; empty space on disk = 2366474450632704 bytes ... done Writing 1398976864 bytes into GRCm38/SA_10 ; empty space on disk = 2366469532811264 bytes ... done Writing 1405386040 bytes into GRCm38/SA_17 ; empty space on disk = 2366468073193472 bytes ...Writing 1442321792 bytes into GRCm38/SA_11 ; empty space on disk = 2366468073193472 bytes ...Writing 1475335032 bytes into GRCm38/SA_16 ; empty space on disk = 2366468073193472 bytes ... done done done Writing 1309394040 bytes into GRCm38/SA_15 ; empty space on disk = 2366462502109184 bytes ...Writing 1516661584 bytes into GRCm38/SA_19 ; empty space on disk = 2366462502109184 bytes ...Writing 1531419976 bytes into GRCm38/SA_12 ; empty space on disk = 2366462502109184 bytes ...Writing 1493676608 bytes into GRCm38/SA_18 ; empty space on disk = 2366462502109184 bytes ...Writing 1322473920 bytes into GRCm38/SA_13 ; empty space on disk = 2366462502109184 bytes ...Writing 1374878040 bytes into GRCm38/SA_14 ; empty space on disk = 2366462502109184 bytes ... done done done done done done Writing 1386571904 bytes into GRCm38/SA_20 ; empty space on disk = 2366449905565696 bytes ... done Writing 1106248528 bytes into GRCm38/SA_29 ; empty space on disk = 2366447595552768 bytes ... done Writing 1522359472 bytes into GRCm38/SA_21 ; empty space on disk = 2366446623522816 bytes ... done Writing 1307025240 bytes into GRCm38/SA_27 ; empty space on disk = 2366444305121280 bytes ... done Writing 1365234176 bytes into GRCm38/SA_26 ; empty space on disk = 2366442602233856 bytes ... done Writing 1451984480 bytes into GRCm38/SA_28 ; empty space on disk = 2366441118498816 bytes ...Writing 1416530776 bytes into GRCm38/SA_22 ; empty space on disk = 2366441118498816 bytes ... done done Writing 1391495744 bytes into GRCm38/SA_25 ; empty space on disk = 2366437448482816 bytes ... done Writing 1502547568 bytes into GRCm38/SA_24 ; empty space on disk = 2366435604037632 bytes ... done Writing 1529850648 bytes into GRCm38/SA_23 ; empty space on disk = 2366433571897344 bytes ... done Feb 08 20:53:48 ... loading chunks from disk, packing SA... Feb 08 20:58:37 ... finished generating suffix array Feb 08 20:58:37 ... generating Suffix Array index Feb 08 21:02:17 ... completed Suffix Array index Feb 08 21:02:17 ..... processing annotations GTF WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456210.1' not found in Genome fasta files for line: GL456210.1 protein_coding exon 9124 10106 . - . exon_id "ENSMUSE00000627465"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079800"; gene_name "A530040E14RIK"; gene_source "ensembl"; p_id "P41634"; transcript_id "ENSMUST00000096862"; transcript_name "A530040E14RIK-201"; transcript_source "ensembl"; tss_id "TSS46579"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456210.1' not found in Genome fasta files for line: GL456210.1 protein_coding exon 58595 58882 . - . exon_id "ENSMUSE00001043626"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079800"; gene_name "A530040E14RIK"; gene_source "ensembl"; p_id "P41634"; transcript_id "ENSMUST00000096862"; transcript_name "A530040E14RIK-201"; transcript_source "ensembl"; tss_id "TSS46579"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456210.1' not found in Genome fasta files for line: GL456210.1 protein_coding exon 108390 108608 . - . exon_id "ENSMUSE00001028134"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095092"; gene_name "AC125149.4"; gene_source "ensembl"; p_id "P10859"; transcript_id "ENSMUST00000177562"; transcript_name "AC125149.4-201"; transcript_source "ensembl"; tss_id "TSS33070"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456210.1' not found in Genome fasta files for line: GL456210.1 protein_coding exon 110157 110303 . - . exon_id "ENSMUSE00001033550"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095092"; gene_name "AC125149.4"; gene_source "ensembl"; p_id "P10859"; transcript_id "ENSMUST00000177562"; transcript_name "AC125149.4-201"; transcript_source "ensembl"; tss_id "TSS33070"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456210.1' not found in Genome fasta files for line: GL456210.1 protein_coding exon 123792 123905 . + . exon_id "ENSMUSE00000902010"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079192"; gene_name "AC125149.1"; gene_source "ensembl"; p_id "P35730"; transcript_id "ENSMUST00000111364"; transcript_name "AC125149.1-201"; transcript_source "ensembl"; tss_id "TSS86985"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456210.1' not found in Genome fasta files for line: GL456210.1 protein_coding exon 124788 124928 . + . exon_id "ENSMUSE00000687584"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079192"; gene_name "AC125149.1"; gene_source "ensembl"; p_id "P35730"; transcript_id "ENSMUST00000111364"; transcript_name "AC125149.1-201"; transcript_source "ensembl"; tss_id "TSS86985"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456210.1' not found in Genome fasta files for line: GL456210.1 protein_coding exon 135395 135525 . - . exon_id "ENSMUSE00000704733"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079794"; gene_name "AC125149.2"; gene_source "ensembl"; p_id "P27319"; transcript_id "ENSMUST00000115931"; transcript_name "AC125149.2-201"; transcript_source "ensembl"; tss_id "TSS51643"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456210.1' not found in Genome fasta files for line: GL456210.1 protein_coding exon 136043 136046 . - . exon_id "ENSMUSE00001013789"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079794"; gene_name "AC125149.2"; gene_source "ensembl"; p_id "P27319"; transcript_id "ENSMUST00000115931"; transcript_name "AC125149.2-201"; transcript_source "ensembl"; tss_id "TSS51643"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456210.1' not found in Genome fasta files for line: GL456210.1 protein_coding exon 136400 136519 . - . exon_id "ENSMUSE00000704739"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079794"; gene_name "AC125149.2"; gene_source "ensembl"; p_id "P27319"; transcript_id "ENSMUST00000115931"; transcript_name "AC125149.2-201"; transcript_source "ensembl"; tss_id "TSS51643"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456210.1' not found in Genome fasta files for line: GL456210.1 protein_coding exon 147792 147938 . + . exon_id "ENSMUSE00001043698"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094799"; gene_name "AC125149.3"; gene_source "ensembl"; p_id "P36641"; transcript_id "ENSMUST00000115928"; transcript_name "AC125149.3-201"; transcript_source "ensembl"; tss_id "TSS35028"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456210.1' not found in Genome fasta files for line: GL456210.1 protein_coding exon 149489 149707 . + . exon_id "ENSMUSE00001005202"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094799"; gene_name "AC125149.3"; gene_source "ensembl"; p_id "P36641"; transcript_id "ENSMUST00000115928"; transcript_name "AC125149.3-201"; transcript_source "ensembl"; tss_id "TSS35028"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456211.1' not found in Genome fasta files for line: GL456211.1 protein_coding exon 30483 30701 . - . exon_id "ENSMUSE00001012171"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095250"; gene_name "AC133103.4"; gene_source "ensembl"; p_id "P8185"; transcript_id "ENSMUST00000179211"; transcript_name "AC133103.4-201"; transcript_source "ensembl"; tss_id "TSS60771"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456211.1' not found in Genome fasta files for line: GL456211.1 protein_coding exon 32250 32396 . - . exon_id "ENSMUSE00000963701"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095250"; gene_name "AC133103.4"; gene_source "ensembl"; p_id "P8185"; transcript_id "ENSMUST00000179211"; transcript_name "AC133103.4-201"; transcript_source "ensembl"; tss_id "TSS60771"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456211.1' not found in Genome fasta files for line: GL456211.1 protein_coding exon 54469 54840 . - . exon_id "ENSMUSE00000966059"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095787"; gene_name "AC133103.6"; gene_source "ensembl"; p_id "P13394"; transcript_id "ENSMUST00000179124"; transcript_name "AC133103.6-201"; transcript_source "ensembl"; tss_id "TSS34559"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456211.1' not found in Genome fasta files for line: GL456211.1 protein_coding exon 66955 67326 . + . exon_id "ENSMUSE00000992279"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096100"; gene_name "AC133103.7"; gene_source "ensembl"; p_id "P40695"; transcript_id "ENSMUST00000179890"; transcript_name "AC133103.7-201"; transcript_source "ensembl"; tss_id "TSS19489"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456211.1' not found in Genome fasta files for line: GL456211.1 processed_pseudogene exon 113868 114758 . + . exon_id "ENSMUSE00000995396"; exon_number "1"; gene_biotype "pseudogene"; gene_id "ENSMUSG00000094054"; gene_name "AC133103.2"; gene_source "ensembl"; transcript_id "ENSMUST00000179487"; transcript_name "AC133103.2-201"; transcript_source "ensembl"; tss_id "TSS59686"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456211.1' not found in Genome fasta files for line: GL456211.1 protein_coding exon 160465 160683 . - . exon_id "ENSMUSE00000998999"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095672"; gene_name "AC133103.5"; gene_source "ensembl"; p_id "P30910"; transcript_id "ENSMUST00000178603"; transcript_name "AC133103.5-201"; transcript_source "ensembl"; tss_id "TSS34209"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456211.1' not found in Genome fasta files for line: GL456211.1 protein_coding exon 162258 162404 . - . exon_id "ENSMUSE00000996490"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095672"; gene_name "AC133103.5"; gene_source "ensembl"; p_id "P30910"; transcript_id "ENSMUST00000178603"; transcript_name "AC133103.5-201"; transcript_source "ensembl"; tss_id "TSS34209"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456211.1' not found in Genome fasta files for line: GL456211.1 protein_coding exon 167446 167988 . + . exon_id "ENSMUSE00000704768"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079190"; gene_name "AC133103.1"; gene_source "ensembl"; p_id "P3386"; transcript_id "ENSMUST00000111360"; transcript_name "AC133103.1-201"; transcript_source "ensembl"; tss_id "TSS74924"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456211.1' not found in Genome fasta files for line: GL456211.1 protein_coding exon 175872 176034 . + . exon_id "ENSMUSE00001047610"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079190"; gene_name "AC133103.1"; gene_source "ensembl"; p_id "P3386"; transcript_id "ENSMUST00000111360"; transcript_name "AC133103.1-201"; transcript_source "ensembl"; tss_id "TSS74924"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456211.1' not found in Genome fasta files for line: GL456211.1 protein_coding exon 176917 177088 . + . exon_id "ENSMUSE00001053940"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079190"; gene_name "AC133103.1"; gene_source "ensembl"; p_id "P3386"; transcript_id "ENSMUST00000111360"; transcript_name "AC133103.1-201"; transcript_source "ensembl"; tss_id "TSS74924"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456211.1' not found in Genome fasta files for line: GL456211.1 protein_coding exon 182219 182281 . + . exon_id "ENSMUSE00001093514"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079190"; gene_name "AC133103.1"; gene_source "ensembl"; p_id "P3386"; transcript_id "ENSMUST00000111360"; transcript_name "AC133103.1-201"; transcript_source "ensembl"; tss_id "TSS74924"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456211.1' not found in Genome fasta files for line: GL456211.1 protein_coding exon 182612 182692 . + . exon_id "ENSMUSE00000983553"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079190"; gene_name "AC133103.1"; gene_source "ensembl"; p_id "P3386"; transcript_id "ENSMUST00000111360"; transcript_name "AC133103.1-201"; transcript_source "ensembl"; tss_id "TSS74924"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456211.1' not found in Genome fasta files for line: GL456211.1 protein_coding exon 194866 194946 . + . exon_id "ENSMUSE00001088431"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079190"; gene_name "AC133103.1"; gene_source "ensembl"; p_id "P3386"; transcript_id "ENSMUST00000111360"; transcript_name "AC133103.1-201"; transcript_source "ensembl"; tss_id "TSS74924"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456211.1' not found in Genome fasta files for line: GL456211.1 protein_coding exon 196109 196478 . + . exon_id "ENSMUSE00000687549"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079190"; gene_name "AC133103.1"; gene_source "ensembl"; p_id "P3386"; transcript_id "ENSMUST00000111360"; transcript_name "AC133103.1-201"; transcript_source "ensembl"; tss_id "TSS74924"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456211.1' not found in Genome fasta files for line: GL456211.1 protein_coding exon 226405 226578 . - . exon_id "ENSMUSE00000969660"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094514"; gene_name "AC133103.3"; gene_source "ensembl"; p_id "P8878"; transcript_id "ENSMUST00000178645"; transcript_name "AC133103.3-201"; transcript_source "ensembl"; tss_id "TSS43488"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456211.1' not found in Genome fasta files for line: GL456211.1 protein_coding exon 229184 229375 . - . exon_id "ENSMUSE00001087445"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094514"; gene_name "AC133103.3"; gene_source "ensembl"; p_id "P8878"; transcript_id "ENSMUST00000178645"; transcript_name "AC133103.3-201"; transcript_source "ensembl"; tss_id "TSS43488"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456212.1' not found in Genome fasta files for line: GL456212.1 protein_coding exon 31967 32140 . - . exon_id "ENSMUSE00001092729"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094915"; gene_name "AC168977.2"; gene_source "ensembl"; p_id "P13402"; transcript_id "ENSMUST00000179715"; transcript_name "AC168977.2-201"; transcript_source "ensembl"; tss_id "TSS50195"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456212.1' not found in Genome fasta files for line: GL456212.1 protein_coding exon 34741 34932 . - . exon_id "ENSMUSE00001012555"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094915"; gene_name "AC168977.2"; gene_source "ensembl"; p_id "P13402"; transcript_id "ENSMUST00000179715"; transcript_name "AC168977.2-201"; transcript_source "ensembl"; tss_id "TSS50195"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456212.1' not found in Genome fasta files for line: GL456212.1 protein_coding exon 128555 129000 . - . exon_id "ENSMUSE00000704698"; exon_number "12"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079808"; gene_name "AC168977.1"; gene_source "ensembl"; p_id "P10222"; transcript_id "ENSMUST00000115924"; transcript_name "AC168977.1-201"; transcript_source "ensembl"; tss_id "TSS49664"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456212.1' not found in Genome fasta files for line: GL456212.1 protein_coding exon 130719 130861 . - . exon_id "ENSMUSE00000967160"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079808"; gene_name "AC168977.1"; gene_source "ensembl"; p_id "P10222"; transcript_id "ENSMUST00000115924"; transcript_name "AC168977.1-201"; transcript_source "ensembl"; tss_id "TSS49664"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456212.1' not found in Genome fasta files for line: GL456212.1 protein_coding exon 131304 131405 . - . exon_id "ENSMUSE00000969442"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079808"; gene_name "AC168977.1"; gene_source "ensembl"; p_id "P10222"; transcript_id "ENSMUST00000115924"; transcript_name "AC168977.1-201"; transcript_source "ensembl"; tss_id "TSS49664"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456212.1' not found in Genome fasta files for line: GL456212.1 protein_coding exon 135153 135221 . - . exon_id "ENSMUSE00001049314"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079808"; gene_name "AC168977.1"; gene_source "ensembl"; p_id "P10222"; transcript_id "ENSMUST00000115924"; transcript_name "AC168977.1-201"; transcript_source "ensembl"; tss_id "TSS49664"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456212.1' not found in Genome fasta files for line: GL456212.1 protein_coding exon 136529 136681 . - . exon_id "ENSMUSE00001071234"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079808"; gene_name "AC168977.1"; gene_source "ensembl"; p_id "P10222"; transcript_id "ENSMUST00000115924"; transcript_name "AC168977.1-201"; transcript_source "ensembl"; tss_id "TSS49664"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456212.1' not found in Genome fasta files for line: GL456212.1 protein_coding exon 137840 137920 . - . exon_id "ENSMUSE00000978616"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079808"; gene_name "AC168977.1"; gene_source "ensembl"; p_id "P10222"; transcript_id "ENSMUST00000115924"; transcript_name "AC168977.1-201"; transcript_source "ensembl"; tss_id "TSS49664"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456212.1' not found in Genome fasta files for line: GL456212.1 protein_coding exon 139015 139092 . - . exon_id "ENSMUSE00000984325"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079808"; gene_name "AC168977.1"; gene_source "ensembl"; p_id "P10222"; transcript_id "ENSMUST00000115924"; transcript_name "AC168977.1-201"; transcript_source "ensembl"; tss_id "TSS49664"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456212.1' not found in Genome fasta files for line: GL456212.1 protein_coding exon 140666 140743 . - . exon_id "ENSMUSE00001047639"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079808"; gene_name "AC168977.1"; gene_source "ensembl"; p_id "P10222"; transcript_id "ENSMUST00000115924"; transcript_name "AC168977.1-201"; transcript_source "ensembl"; tss_id "TSS49664"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456212.1' not found in Genome fasta files for line: GL456212.1 protein_coding exon 142982 143248 . - . exon_id "ENSMUSE00001069451"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079808"; gene_name "AC168977.1"; gene_source "ensembl"; p_id "P10222"; transcript_id "ENSMUST00000115924"; transcript_name "AC168977.1-201"; transcript_source "ensembl"; tss_id "TSS49664"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456212.1' not found in Genome fasta files for line: GL456212.1 protein_coding exon 145844 146012 . - . exon_id "ENSMUSE00001021288"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079808"; gene_name "AC168977.1"; gene_source "ensembl"; p_id "P10222"; transcript_id "ENSMUST00000115924"; transcript_name "AC168977.1-201"; transcript_source "ensembl"; tss_id "TSS49664"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456212.1' not found in Genome fasta files for line: GL456212.1 protein_coding exon 147542 147689 . - . exon_id "ENSMUSE00000999655"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079808"; gene_name "AC168977.1"; gene_source "ensembl"; p_id "P10222"; transcript_id "ENSMUST00000115924"; transcript_name "AC168977.1-201"; transcript_source "ensembl"; tss_id "TSS49664"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456212.1' not found in Genome fasta files for line: GL456212.1 protein_coding exon 150277 150452 . - . exon_id "ENSMUSE00000627468"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079808"; gene_name "AC168977.1"; gene_source "ensembl"; p_id "P10222"; transcript_id "ENSMUST00000115924"; transcript_name "AC168977.1-201"; transcript_source "ensembl"; tss_id "TSS49664"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456216.1' not found in Genome fasta files for line: GL456216.1 protein_coding exon 15881 16407 . + . exon_id "ENSMUSE00000699828"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000063897"; gene_name "CAAA01118383.1"; gene_source "ensembl"; p_id "P19731"; transcript_id "ENSMUST00000077235"; transcript_name "CAAA01118383.1-201"; transcript_source "ensembl"; tss_id "TSS38770"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456216.1' not found in Genome fasta files for line: GL456216.1 protein_coding exon 30699 30806 . + . exon_id "ENSMUSE00000453486"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000063897"; gene_name "CAAA01118383.1"; gene_source "ensembl"; p_id "P19731"; transcript_id "ENSMUST00000077235"; transcript_name "CAAA01118383.1-201"; transcript_source "ensembl"; tss_id "TSS38770"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456216.1' not found in Genome fasta files for line: GL456216.1 protein_coding exon 31059 31127 . + . exon_id "ENSMUSE00000453473"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000063897"; gene_name "CAAA01118383.1"; gene_source "ensembl"; p_id "P19731"; transcript_id "ENSMUST00000077235"; transcript_name "CAAA01118383.1-201"; transcript_source "ensembl"; tss_id "TSS38770"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456216.1' not found in Genome fasta files for line: GL456216.1 protein_coding exon 31370 31471 . + . exon_id "ENSMUSE00000453470"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000063897"; gene_name "CAAA01118383.1"; gene_source "ensembl"; p_id "P19731"; transcript_id "ENSMUST00000077235"; transcript_name "CAAA01118383.1-201"; transcript_source "ensembl"; tss_id "TSS38770"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456216.1' not found in Genome fasta files for line: GL456216.1 protein_coding exon 34138 34345 . + . exon_id "ENSMUSE00000453467"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000063897"; gene_name "CAAA01118383.1"; gene_source "ensembl"; p_id "P19731"; transcript_id "ENSMUST00000077235"; transcript_name "CAAA01118383.1-201"; transcript_source "ensembl"; tss_id "TSS38770"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456216.1' not found in Genome fasta files for line: GL456216.1 protein_coding exon 34624 34831 . + . exon_id "ENSMUSE00000453463"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000063897"; gene_name "CAAA01118383.1"; gene_source "ensembl"; p_id "P19731"; transcript_id "ENSMUST00000077235"; transcript_name "CAAA01118383.1-201"; transcript_source "ensembl"; tss_id "TSS38770"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456216.1' not found in Genome fasta files for line: GL456216.1 protein_coding exon 35233 36183 . + . exon_id "ENSMUSE00000453478"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000063897"; gene_name "CAAA01118383.1"; gene_source "ensembl"; p_id "P19731"; transcript_id "ENSMUST00000077235"; transcript_name "CAAA01118383.1-201"; transcript_source "ensembl"; tss_id "TSS38770"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456216.1' not found in Genome fasta files for line: GL456216.1 snRNA exon 50830 50978 . - . exon_id "ENSMUSE00000722452"; exon_number "1"; gene_biotype "snRNA"; gene_id "ENSMUSG00000084520"; gene_name "U2"; gene_source "ensembl"; transcript_id "ENSMUST00000122571"; transcript_name "U2.1-201"; transcript_source "ensembl"; tss_id "TSS11570"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456219.1' not found in Genome fasta files for line: GL456219.1 protein_coding exon 94186 95088 . - . exon_id "ENSMUSE00001093275"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096776"; gene_name "VMN1R62"; gene_source "ensembl"; p_id "P10057"; transcript_id "ENSMUST00000177783"; transcript_name "VMN1R62-201"; transcript_source "ensembl"; tss_id "TSS26081"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456219.1' not found in Genome fasta files for line: GL456219.1 protein_coding exon 149261 150163 . - . exon_id "ENSMUSE00001042942"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096244"; gene_name "VMN1R63"; gene_source "ensembl"; p_id "P39665"; transcript_id "ENSMUST00000177979"; transcript_name "VMN1R63-201"; transcript_source "ensembl"; tss_id "TSS16210"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456221.1' not found in Genome fasta files for line: GL456221.1 protein_coding exon 17591 18185 . - . exon_id "ENSMUSE00000873092"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079222"; gene_name "AC132444.1"; gene_source "ensembl"; p_id "P38688"; transcript_id "ENSMUST00000111423"; transcript_name "AC132444.1-201"; transcript_source "ensembl"; tss_id "TSS29153"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456221.1' not found in Genome fasta files for line: GL456221.1 protein_coding exon 21897 21965 . - . exon_id "ENSMUSE00000973479"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079222"; gene_name "AC132444.1"; gene_source "ensembl"; p_id "P38688"; transcript_id "ENSMUST00000111423"; transcript_name "AC132444.1-201"; transcript_source "ensembl"; tss_id "TSS29153"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456221.1' not found in Genome fasta files for line: GL456221.1 protein_coding exon 23288 23437 . - . exon_id "ENSMUSE00000972574"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079222"; gene_name "AC132444.1"; gene_source "ensembl"; p_id "P38688"; transcript_id "ENSMUST00000111423"; transcript_name "AC132444.1-201"; transcript_source "ensembl"; tss_id "TSS29153"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456221.1' not found in Genome fasta files for line: GL456221.1 protein_coding exon 24599 24679 . - . exon_id "ENSMUSE00000991606"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079222"; gene_name "AC132444.1"; gene_source "ensembl"; p_id "P38688"; transcript_id "ENSMUST00000111423"; transcript_name "AC132444.1-201"; transcript_source "ensembl"; tss_id "TSS29153"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456221.1' not found in Genome fasta files for line: GL456221.1 protein_coding exon 25845 25922 . - . exon_id "ENSMUSE00001014865"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079222"; gene_name "AC132444.1"; gene_source "ensembl"; p_id "P38688"; transcript_id "ENSMUST00000111423"; transcript_name "AC132444.1-201"; transcript_source "ensembl"; tss_id "TSS29153"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456221.1' not found in Genome fasta files for line: GL456221.1 protein_coding exon 27498 27575 . - . exon_id "ENSMUSE00000687824"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079222"; gene_name "AC132444.1"; gene_source "ensembl"; p_id "P38688"; transcript_id "ENSMUST00000111423"; transcript_name "AC132444.1-201"; transcript_source "ensembl"; tss_id "TSS29153"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456221.1' not found in Genome fasta files for line: GL456221.1 protein_coding exon 30050 30203 . - . exon_id "ENSMUSE00001009922"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079222"; gene_name "AC132444.1"; gene_source "ensembl"; p_id "P38688"; transcript_id "ENSMUST00000111423"; transcript_name "AC132444.1-201"; transcript_source "ensembl"; tss_id "TSS29153"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456221.1' not found in Genome fasta files for line: GL456221.1 protein_coding exon 30394 30612 . - . exon_id "ENSMUSE00001026628"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094874"; gene_name "AC132444.3"; gene_source "ensembl"; p_id "P38239"; transcript_id "ENSMUST00000178199"; transcript_name "AC132444.3-201"; transcript_source "ensembl"; tss_id "TSS43028"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456221.1' not found in Genome fasta files for line: GL456221.1 protein_coding exon 32160 32306 . - . exon_id "ENSMUSE00000978712"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094874"; gene_name "AC132444.3"; gene_source "ensembl"; p_id "P38239"; transcript_id "ENSMUST00000178199"; transcript_name "AC132444.3-201"; transcript_source "ensembl"; tss_id "TSS43028"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456221.1' not found in Genome fasta files for line: GL456221.1 protein_coding exon 32239 32298 . + . exon_id "ENSMUSE00001018698"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095500"; gene_name "AC132444.5"; gene_source "ensembl"; p_id "P20634"; transcript_id "ENSMUST00000178309"; transcript_name "AC132444.5-201"; transcript_source "ensembl"; tss_id "TSS53356"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456221.1' not found in Genome fasta files for line: GL456221.1 protein_coding exon 46194 46298 . + . exon_id "ENSMUSE00001050589"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095500"; gene_name "AC132444.5"; gene_source "ensembl"; p_id "P20634"; transcript_id "ENSMUST00000178309"; transcript_name "AC132444.5-201"; transcript_source "ensembl"; tss_id "TSS53356"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456221.1' not found in Genome fasta files for line: GL456221.1 protein_coding exon 46295 46666 . - . exon_id "ENSMUSE00000975050"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095450"; gene_name "AC132444.4"; gene_source "ensembl"; p_id "P9880"; transcript_id "ENSMUST00000179292"; transcript_name "AC132444.4-201"; transcript_source "ensembl"; tss_id "TSS51816"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456221.1' not found in Genome fasta files for line: GL456221.1 protein_coding exon 47169 47294 . + . exon_id "ENSMUSE00001027594"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095500"; gene_name "AC132444.5"; gene_source "ensembl"; p_id "P20634"; transcript_id "ENSMUST00000178309"; transcript_name "AC132444.5-201"; transcript_source "ensembl"; tss_id "TSS53356"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456221.1' not found in Genome fasta files for line: GL456221.1 protein_coding exon 58743 59114 . + . exon_id "ENSMUSE00001021016"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094728"; gene_name "AC132444.2"; gene_source "ensembl"; p_id "P14528"; transcript_id "ENSMUST00000180119"; transcript_name "AC132444.2-201"; transcript_source "ensembl"; tss_id "TSS48263"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456221.1' not found in Genome fasta files for line: GL456221.1 protein_coding exon 111572 114076 . - . exon_id "ENSMUSE00000582258"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000062783"; gene_name "Csprs"; gene_source "ensembl"; p_id "P4359"; transcript_id "ENSMUST00000078827"; transcript_name "Csprs-201"; transcript_source "ensembl"; tss_id "TSS39479"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456221.1' not found in Genome fasta files for line: GL456221.1 protein_coding exon 151235 152734 . + . exon_id "ENSMUSE00001049966"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096808"; gene_name "AC132444.6"; gene_source "ensembl"; p_id "P40875"; transcript_id "ENSMUST00000177921"; transcript_name "AC132444.6-201"; transcript_source "ensembl"; tss_id "TSS75578"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456221.1' not found in Genome fasta files for line: GL456221.1 protein_coding exon 162798 163011 . - . exon_id "ENSMUSE00000582259"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000062783"; gene_name "Csprs"; gene_source "ensembl"; p_id "P4359"; transcript_id "ENSMUST00000078827"; transcript_name "Csprs-201"; transcript_source "ensembl"; tss_id "TSS39479"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456233.1' not found in Genome fasta files for line: GL456233.1 protein_coding exon 10738 12544 . - . exon_id "ENSMUSE00000414558"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000051412"; gene_name "Vamp7"; gene_source "ensembl"; p_id "P2936"; transcript_id "ENSMUST00000051100"; transcript_name "Vamp7-201"; transcript_source "ensembl"; tss_id "TSS85572"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456233.1' not found in Genome fasta files for line: GL456233.1 protein_coding exon 14075 14167 . - . exon_id "ENSMUSE00000455382"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000051412"; gene_name "Vamp7"; gene_source "ensembl"; p_id "P2936"; transcript_id "ENSMUST00000051100"; transcript_name "Vamp7-201"; transcript_source "ensembl"; tss_id "TSS85572"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456233.1' not found in Genome fasta files for line: GL456233.1 protein_coding exon 21628 21695 . - . exon_id "ENSMUSE00000455391"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000051412"; gene_name "Vamp7"; gene_source "ensembl"; p_id "P2936"; transcript_id "ENSMUST00000051100"; transcript_name "Vamp7-201"; transcript_source "ensembl"; tss_id "TSS85572"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456233.1' not found in Genome fasta files for line: GL456233.1 protein_coding exon 24872 24962 . - . exon_id "ENSMUSE00000455398"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000051412"; gene_name "Vamp7"; gene_source "ensembl"; p_id "P2936"; transcript_id "ENSMUST00000051100"; transcript_name "Vamp7-201"; transcript_source "ensembl"; tss_id "TSS85572"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456233.1' not found in Genome fasta files for line: GL456233.1 protein_coding exon 25190 25201 . + . exon_id "ENSMUSE00001057328"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000090805"; gene_name "CAAA01165726.1"; gene_source "ensembl"; p_id "P46677"; transcript_id "ENSMUST00000167421"; transcript_name "CAAA01165726.1-201"; transcript_source "ensembl"; tss_id "TSS6631"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456233.1' not found in Genome fasta files for line: GL456233.1 protein_coding exon 25541 25568 . + . exon_id "ENSMUSE00000878834"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000090805"; gene_name "CAAA01165726.1"; gene_source "ensembl"; p_id "P46677"; transcript_id "ENSMUST00000167421"; transcript_name "CAAA01165726.1-201"; transcript_source "ensembl"; tss_id "TSS6631"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456233.1' not found in Genome fasta files for line: GL456233.1 protein_coding exon 25763 25788 . + . exon_id "ENSMUSE00000904622"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000090805"; gene_name "CAAA01165726.1"; gene_source "ensembl"; p_id "P46677"; transcript_id "ENSMUST00000167421"; transcript_name "CAAA01165726.1-201"; transcript_source "ensembl"; tss_id "TSS6631"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456233.1' not found in Genome fasta files for line: GL456233.1 protein_coding exon 28976 29113 . - . exon_id "ENSMUSE00000455401"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000051412"; gene_name "Vamp7"; gene_source "ensembl"; p_id "P2936"; transcript_id "ENSMUST00000051100"; transcript_name "Vamp7-201"; transcript_source "ensembl"; tss_id "TSS85572"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456233.1' not found in Genome fasta files for line: GL456233.1 protein_coding exon 30588 30645 . - . exon_id "ENSMUSE00000455407"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000051412"; gene_name "Vamp7"; gene_source "ensembl"; p_id "P2936"; transcript_id "ENSMUST00000051100"; transcript_name "Vamp7-201"; transcript_source "ensembl"; tss_id "TSS85572"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456233.1' not found in Genome fasta files for line: GL456233.1 protein_coding exon 32430 32584 . - . exon_id "ENSMUSE00000411611"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000051412"; gene_name "Vamp7"; gene_source "ensembl"; p_id "P2936"; transcript_id "ENSMUST00000051100"; transcript_name "Vamp7-201"; transcript_source "ensembl"; tss_id "TSS85572"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456233.1' not found in Genome fasta files for line: GL456233.1 protein_coding exon 39025 39148 . - . exon_id "ENSMUSE00000492030"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000051412"; gene_name "Vamp7"; gene_source "ensembl"; p_id "P2936"; transcript_id "ENSMUST00000051100"; transcript_name "Vamp7-201"; transcript_source "ensembl"; tss_id "TSS85572"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456233.1' not found in Genome fasta files for line: GL456233.1 snRNA exon 79697 79797 . - . exon_id "ENSMUSE00000847673"; exon_number "1"; gene_biotype "snRNA"; gene_id "ENSMUSG00000089163"; gene_name "U6"; gene_source "ensembl"; transcript_id "ENSMUST00000158538"; transcript_name "U6.1-201"; transcript_source "ensembl"; tss_id "TSS79886"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456233.1' not found in Genome fasta files for line: GL456233.1 protein_coding exon 101352 105572 . - . exon_id "ENSMUSE00000512776"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000061654"; gene_name "Spry3"; gene_source "ensembl"; p_id "P33778"; transcript_id "ENSMUST00000076951"; transcript_name "Spry3-201"; transcript_source "ensembl"; tss_id "TSS7447"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456233.1' not found in Genome fasta files for line: GL456233.1 protein_coding exon 106268 106395 . - . exon_id "ENSMUSE00000628288"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000061654"; gene_name "Spry3"; gene_source "ensembl"; p_id "P33778"; transcript_id "ENSMUST00000076951"; transcript_name "Spry3-201"; transcript_source "ensembl"; tss_id "TSS7447"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456233.1' not found in Genome fasta files for line: GL456233.1 protein_coding exon 159647 159773 . + . exon_id "ENSMUSE00000704952"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079834"; gene_name "Tmlhe"; gene_source "ensembl"; p_id "P41452"; transcript_id "ENSMUST00000115964"; transcript_name "Tmlhe-201"; transcript_source "ensembl"; tss_id "TSS60842"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456233.1' not found in Genome fasta files for line: GL456233.1 protein_coding exon 216736 216917 . + . exon_id "ENSMUSE00000704951"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079834"; gene_name "Tmlhe"; gene_source "ensembl"; p_id "P41452"; transcript_id "ENSMUST00000115964"; transcript_name "Tmlhe-201"; transcript_source "ensembl"; tss_id "TSS60842"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456233.1' not found in Genome fasta files for line: GL456233.1 protein_coding exon 258247 258423 . + . exon_id "ENSMUSE00000704943"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079834"; gene_name "Tmlhe"; gene_source "ensembl"; p_id "P41452"; transcript_id "ENSMUST00000115964"; transcript_name "Tmlhe-201"; transcript_source "ensembl"; tss_id "TSS60842"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456233.1' not found in Genome fasta files for line: GL456233.1 protein_coding exon 272714 272993 . + . exon_id "ENSMUSE00000704940"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079834"; gene_name "Tmlhe"; gene_source "ensembl"; p_id "P41452"; transcript_id "ENSMUST00000115964"; transcript_name "Tmlhe-201"; transcript_source "ensembl"; tss_id "TSS60842"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456233.1' not found in Genome fasta files for line: GL456233.1 protein_coding exon 285396 285515 . + . exon_id "ENSMUSE00000704936"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079834"; gene_name "Tmlhe"; gene_source "ensembl"; p_id "P41452"; transcript_id "ENSMUST00000115964"; transcript_name "Tmlhe-201"; transcript_source "ensembl"; tss_id "TSS60842"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456233.1' not found in Genome fasta files for line: GL456233.1 protein_coding exon 326114 326350 . + . exon_id "ENSMUSE00000704934"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079834"; gene_name "Tmlhe"; gene_source "ensembl"; p_id "P41452"; transcript_id "ENSMUST00000115964"; transcript_name "Tmlhe-201"; transcript_source "ensembl"; tss_id "TSS60842"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456233.1' not found in Genome fasta files for line: GL456233.1 protein_coding exon 332450 332588 . + . exon_id "ENSMUSE00000704928"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079834"; gene_name "Tmlhe"; gene_source "ensembl"; p_id "P41452"; transcript_id "ENSMUST00000115964"; transcript_name "Tmlhe-201"; transcript_source "ensembl"; tss_id "TSS60842"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456233.1' not found in Genome fasta files for line: GL456233.1 protein_coding exon 333195 334183 . + . exon_id "ENSMUSE00000704922"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079834"; gene_name "Tmlhe"; gene_source "ensembl"; p_id "P41452"; transcript_id "ENSMUST00000115964"; transcript_name "Tmlhe-201"; transcript_source "ensembl"; tss_id "TSS60842"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456239.1' not found in Genome fasta files for line: GL456239.1 miRNA exon 38438 38535 . + . exon_id "ENSMUSE00001313986"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000099278"; gene_name "CR524822.1"; gene_source "ensembl"; transcript_id "ENSMUST00000183641"; transcript_name "CR524822.1-201"; transcript_source "ensembl"; tss_id "TSS22870"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456350.1' not found in Genome fasta files for line: GL456350.1 protein_coding exon 394 424 . - . exon_id "ENSMUSE00001027484"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094121"; gene_name "Ccl21c"; gene_source "ensembl"; p_id "P1104"; transcript_id "ENSMUST00000177695"; transcript_name "Ccl21c-201"; transcript_source "ensembl"; tss_id "TSS57805"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456350.1' not found in Genome fasta files for line: GL456350.1 protein_coding exon 507 689 . - . exon_id "ENSMUSE00001013697"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094121"; gene_name "Ccl21c"; gene_source "ensembl"; p_id "P1104"; transcript_id "ENSMUST00000177695"; transcript_name "Ccl21c-201"; transcript_source "ensembl"; tss_id "TSS57805"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456350.1' not found in Genome fasta files for line: GL456350.1 protein_coding exon 784 904 . - . exon_id "ENSMUSE00000967099"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094121"; gene_name "Ccl21c"; gene_source "ensembl"; p_id "P1104"; transcript_id "ENSMUST00000177695"; transcript_name "Ccl21c-201"; transcript_source "ensembl"; tss_id "TSS57805"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456350.1' not found in Genome fasta files for line: GL456350.1 protein_coding exon 993 1059 . - . exon_id "ENSMUSE00000980949"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094121"; gene_name "Ccl21c"; gene_source "ensembl"; p_id "P1104"; transcript_id "ENSMUST00000177695"; transcript_name "Ccl21c-201"; transcript_source "ensembl"; tss_id "TSS57805"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456350.1' not found in Genome fasta files for line: GL456350.1 protein_coding exon 23801 25222 . - . exon_id "ENSMUSE00001025478"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094576"; gene_name "GM7819"; gene_source "ensembl"; p_id "P29559"; transcript_id "ENSMUST00000179935"; transcript_name "GM7819-201"; transcript_source "ensembl"; tss_id "TSS55707"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456350.1' not found in Genome fasta files for line: GL456350.1 pseudogene exon 26556 26714 . - . exon_id "ENSMUSE00000704599"; exon_number "4"; gene_biotype "pseudogene"; gene_id "ENSMUSG00000079764"; gene_name "AC087559.1"; gene_source "ensembl"; transcript_id "ENSMUST00000115902"; transcript_name "AC087559.1-201"; transcript_source "ensembl"; tss_id "TSS34546"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456350.1' not found in Genome fasta files for line: GL456350.1 pseudogene exon 26719 26853 . - . exon_id "ENSMUSE00000704600"; exon_number "3"; gene_biotype "pseudogene"; gene_id "ENSMUSG00000079764"; gene_name "AC087559.1"; gene_source "ensembl"; transcript_id "ENSMUST00000115902"; transcript_name "AC087559.1-201"; transcript_source "ensembl"; tss_id "TSS34546"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456350.1' not found in Genome fasta files for line: GL456350.1 pseudogene exon 26858 26893 . - . exon_id "ENSMUSE00000704602"; exon_number "2"; gene_biotype "pseudogene"; gene_id "ENSMUSG00000079764"; gene_name "AC087559.1"; gene_source "ensembl"; transcript_id "ENSMUST00000115902"; transcript_name "AC087559.1-201"; transcript_source "ensembl"; tss_id "TSS34546"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456350.1' not found in Genome fasta files for line: GL456350.1 pseudogene exon 26898 27953 . - . exon_id "ENSMUSE00000632906"; exon_number "1"; gene_biotype "pseudogene"; gene_id "ENSMUSG00000079764"; gene_name "AC087559.1"; gene_source "ensembl"; transcript_id "ENSMUST00000115902"; transcript_name "AC087559.1-201"; transcript_source "ensembl"; tss_id "TSS34546"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456350.1' not found in Genome fasta files for line: GL456350.1 protein_coding exon 31634 32560 . + . exon_id "ENSMUSE00001012802"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000093972"; gene_name "4930466F19RIK"; gene_source "ensembl"; p_id "P34743"; transcript_id "ENSMUST00000179370"; transcript_name "4930466F19RIK-201"; transcript_source "ensembl"; tss_id "TSS52317"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456350.1' not found in Genome fasta files for line: GL456350.1 protein_coding exon 80399 80824 . - . exon_id "ENSMUSE00000986059"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096416"; gene_name "AC087559.2"; gene_source "ensembl"; p_id "P12018"; transcript_id "ENSMUST00000178800"; transcript_name "AC087559.2-201"; transcript_source "ensembl"; tss_id "TSS65266"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456350.1' not found in Genome fasta files for line: GL456350.1 protein_coding exon 144079 147895 . - . exon_id "ENSMUSE00000704647"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079774"; gene_name "FAM205A"; gene_source "ensembl"; p_id "P36989"; transcript_id "ENSMUST00000115912"; transcript_name "FAM205A-201"; transcript_source "ensembl"; tss_id "TSS19346"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456350.1' not found in Genome fasta files for line: GL456350.1 protein_coding exon 148542 148602 . - . exon_id "ENSMUSE00001033747"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079774"; gene_name "FAM205A"; gene_source "ensembl"; p_id "P36989"; transcript_id "ENSMUST00000115912"; transcript_name "FAM205A-201"; transcript_source "ensembl"; tss_id "TSS19346"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456350.1' not found in Genome fasta files for line: GL456350.1 protein_coding exon 149041 149086 . - . exon_id "ENSMUSE00001061629"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079774"; gene_name "FAM205A"; gene_source "ensembl"; p_id "P36989"; transcript_id "ENSMUST00000115912"; transcript_name "FAM205A-201"; transcript_source "ensembl"; tss_id "TSS19346"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456350.1' not found in Genome fasta files for line: GL456350.1 protein_coding exon 149672 149877 . - . exon_id "ENSMUSE00000989857"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079774"; gene_name "FAM205A"; gene_source "ensembl"; p_id "P36989"; transcript_id "ENSMUST00000115912"; transcript_name "FAM205A-201"; transcript_source "ensembl"; tss_id "TSS19346"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456350.1' not found in Genome fasta files for line: GL456350.1 protein_coding exon 173252 173451 . - . exon_id "ENSMUSE00001063552"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079773"; gene_name "GM13308"; gene_source "ensembl"; p_id "P6601"; transcript_id "ENSMUST00000115907"; transcript_name "GM13308-201"; transcript_source "ensembl"; tss_id "TSS2984"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456350.1' not found in Genome fasta files for line: GL456350.1 protein_coding exon 173566 173625 . - . exon_id "ENSMUSE00000985944"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079773"; gene_name "GM13308"; gene_source "ensembl"; p_id "P6601"; transcript_id "ENSMUST00000115907"; transcript_name "GM13308-201"; transcript_source "ensembl"; tss_id "TSS2984"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456350.1' not found in Genome fasta files for line: GL456350.1 protein_coding exon 173837 173903 . - . exon_id "ENSMUSE00001012943"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079773"; gene_name "GM13308"; gene_source "ensembl"; p_id "P6601"; transcript_id "ENSMUST00000115907"; transcript_name "GM13308-201"; transcript_source "ensembl"; tss_id "TSS2984"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456350.1' not found in Genome fasta files for line: GL456350.1 protein_coding exon 174202 174286 . - . exon_id "ENSMUSE00001035057"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000079773"; gene_name "GM13308"; gene_source "ensembl"; p_id "P6601"; transcript_id "ENSMUST00000115907"; transcript_name "GM13308-201"; transcript_source "ensembl"; tss_id "TSS2984"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456350.1' not found in Genome fasta files for line: GL456350.1 protein_coding exon 211325 211748 . - . exon_id "ENSMUSE00001034852"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096271"; gene_name "Ccl21c"; gene_source "ensembl"; p_id "P24700"; transcript_id "ENSMUST00000178765"; transcript_name "Ccl21c-202"; transcript_source "ensembl"; tss_id "TSS22832"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456350.1' not found in Genome fasta files for line: GL456350.1 protein_coding exon 211831 212013 . - . exon_id "ENSMUSE00000986014"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096271"; gene_name "Ccl21c"; gene_source "ensembl"; p_id "P24700"; transcript_id "ENSMUST00000178765"; transcript_name "Ccl21c-202"; transcript_source "ensembl"; tss_id "TSS22832"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456350.1' not found in Genome fasta files for line: GL456350.1 protein_coding exon 212108 212228 . - . exon_id "ENSMUSE00001004201"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096271"; gene_name "Ccl21c"; gene_source "ensembl"; p_id "P24700"; transcript_id "ENSMUST00000178765"; transcript_name "Ccl21c-202"; transcript_source "ensembl"; tss_id "TSS22832"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456350.1' not found in Genome fasta files for line: GL456350.1 protein_coding exon 212317 212455 . - . exon_id "ENSMUSE00001034829"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096271"; gene_name "Ccl21c"; gene_source "ensembl"; p_id "P24700"; transcript_id "ENSMUST00000178765"; transcript_name "Ccl21c-202"; transcript_source "ensembl"; tss_id "TSS22832"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456354.1' not found in Genome fasta files for line: GL456354.1 protein_coding exon 6366 6652 . + . exon_id "ENSMUSE00000990400"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094741"; gene_name "GM16522"; gene_source "ensembl"; p_id "P39613"; transcript_id "ENSMUST00000178291"; transcript_name "GM16522-201"; transcript_source "ensembl"; tss_id "TSS43285"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456354.1' not found in Genome fasta files for line: GL456354.1 protein_coding exon 7107 7697 . + . exon_id "ENSMUSE00001019582"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094741"; gene_name "GM16522"; gene_source "ensembl"; p_id "P39613"; transcript_id "ENSMUST00000178291"; transcript_name "GM16522-201"; transcript_source "ensembl"; tss_id "TSS43285"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456354.1' not found in Genome fasta files for line: GL456354.1 protein_coding exon 8594 8939 . + . exon_id "ENSMUSE00000988211"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094741"; gene_name "GM16522"; gene_source "ensembl"; p_id "P39613"; transcript_id "ENSMUST00000178291"; transcript_name "GM16522-201"; transcript_source "ensembl"; tss_id "TSS43285"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456354.1' not found in Genome fasta files for line: GL456354.1 protein_coding exon 25923 26265 . - . exon_id "ENSMUSE00000640171"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000074720"; gene_name "AC140325.1"; gene_source "ensembl"; p_id "P29606"; transcript_id "ENSMUST00000099245"; transcript_name "AC140325.1-201"; transcript_source "ensembl"; tss_id "TSS86795"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456354.1' not found in Genome fasta files for line: GL456354.1 protein_coding exon 27088 27230 . - . exon_id "ENSMUSE00000640172"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000074720"; gene_name "AC140325.1"; gene_source "ensembl"; p_id "P29606"; transcript_id "ENSMUST00000099245"; transcript_name "AC140325.1-201"; transcript_source "ensembl"; tss_id "TSS86795"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456354.1' not found in Genome fasta files for line: GL456354.1 protein_coding exon 82993 83560 . - . exon_id "ENSMUSE00001080264"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094337"; gene_name "GM3286"; gene_source "ensembl"; p_id "P31780"; transcript_id "ENSMUST00000179140"; transcript_name "GM3286-202"; transcript_source "ensembl"; tss_id "TSS44894"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456354.1' not found in Genome fasta files for line: GL456354.1 protein_coding exon 82993 83560 . - . exon_id "ENSMUSE00001080264"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094337"; gene_name "GM3286"; gene_source "ensembl"; p_id "P24182"; transcript_id "ENSMUST00000164489"; transcript_name "GM3286-201"; transcript_source "ensembl"; tss_id "TSS44894"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456354.1' not found in Genome fasta files for line: GL456354.1 protein_coding exon 84521 85111 . - . exon_id "ENSMUSE00000975337"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094337"; gene_name "GM3286"; gene_source "ensembl"; p_id "P31780"; transcript_id "ENSMUST00000179140"; transcript_name "GM3286-202"; transcript_source "ensembl"; tss_id "TSS44894"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456354.1' not found in Genome fasta files for line: GL456354.1 protein_coding exon 85765 86051 . - . exon_id "ENSMUSE00001048057"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094337"; gene_name "GM3286"; gene_source "ensembl"; p_id "P31780"; transcript_id "ENSMUST00000179140"; transcript_name "GM3286-202"; transcript_source "ensembl"; tss_id "TSS44894"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456354.1' not found in Genome fasta files for line: GL456354.1 protein_coding exon 85765 86051 . - . exon_id "ENSMUSE00001048057"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094337"; gene_name "GM3286"; gene_source "ensembl"; p_id "P24182"; transcript_id "ENSMUST00000164489"; transcript_name "GM3286-201"; transcript_source "ensembl"; tss_id "TSS44894"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456354.1' not found in Genome fasta files for line: GL456354.1 protein_coding exon 146926 147493 . - . exon_id "ENSMUSE00001033519"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095570"; gene_name "AC140325.2"; gene_source "ensembl"; p_id "P24489"; transcript_id "ENSMUST00000179972"; transcript_name "AC140325.2-201"; transcript_source "ensembl"; tss_id "TSS65408"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456354.1' not found in Genome fasta files for line: GL456354.1 protein_coding exon 148317 148904 . - . exon_id "ENSMUSE00001032789"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095570"; gene_name "AC140325.2"; gene_source "ensembl"; p_id "P24489"; transcript_id "ENSMUST00000179972"; transcript_name "AC140325.2-201"; transcript_source "ensembl"; tss_id "TSS65408"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456354.1' not found in Genome fasta files for line: GL456354.1 protein_coding exon 149373 149659 . - . exon_id "ENSMUSE00001062620"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095570"; gene_name "AC140325.2"; gene_source "ensembl"; p_id "P24489"; transcript_id "ENSMUST00000179972"; transcript_name "AC140325.2-201"; transcript_source "ensembl"; tss_id "TSS65408"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456354.1' not found in Genome fasta files for line: GL456354.1 protein_coding exon 158543 158829 . + . exon_id "ENSMUSE00001058179"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096728"; gene_name "AC140325.3"; gene_source "ensembl"; p_id "P33042"; transcript_id "ENSMUST00000178296"; transcript_name "AC140325.3-201"; transcript_source "ensembl"; tss_id "TSS47671"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456354.1' not found in Genome fasta files for line: GL456354.1 protein_coding exon 159284 159874 . + . exon_id "ENSMUSE00000981486"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096728"; gene_name "AC140325.3"; gene_source "ensembl"; p_id "P33042"; transcript_id "ENSMUST00000178296"; transcript_name "AC140325.3-201"; transcript_source "ensembl"; tss_id "TSS47671"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456354.1' not found in Genome fasta files for line: GL456354.1 protein_coding exon 160772 161339 . + . exon_id "ENSMUSE00001073059"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096728"; gene_name "AC140325.3"; gene_source "ensembl"; p_id "P33042"; transcript_id "ENSMUST00000178296"; transcript_name "AC140325.3-201"; transcript_source "ensembl"; tss_id "TSS47671"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456372.1' not found in Genome fasta files for line: GL456372.1 miRNA exon 13262 13382 . - . exon_id "ENSMUSE00001092859"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000094621"; gene_name "CAAA01098150.1"; gene_source "ensembl"; transcript_id "ENSMUST00000178366"; transcript_name "CAAA01098150.1-201"; transcript_source "ensembl"; tss_id "TSS76749"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456381.1' not found in Genome fasta files for line: GL456381.1 miRNA exon 16623 16721 . - . exon_id "ENSMUSE00001317183"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000098647"; gene_name "CAAA01064564.1"; gene_source "ensembl"; transcript_id "ENSMUST00000184505"; transcript_name "CAAA01064564.1-201"; transcript_source "ensembl"; tss_id "TSS69340"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456385.1' not found in Genome fasta files for line: GL456385.1 miRNA exon 31243 31343 . + . exon_id "ENSMUSE00001031125"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000095434"; gene_name "CAAA01205117.2"; gene_source "ensembl"; transcript_id "ENSMUST00000178705"; transcript_name "CAAA01205117.2-201"; transcript_source "ensembl"; tss_id "TSS57710"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'GL456385.1' not found in Genome fasta files for line: GL456385.1 miRNA exon 32719 32818 . + . exon_id "ENSMUSE00001005911"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000094431"; gene_name "CAAA01205117.1"; gene_source "ensembl"; transcript_id "ENSMUST00000180206"; transcript_name "CAAA01205117.1-201"; transcript_source "ensembl"; tss_id "TSS31525"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584292.1' not found in Genome fasta files for line: JH584292.1 protein_coding exon 3536 3826 . + . exon_id "ENSMUSE00001080738"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096730"; gene_name "Vmn2r122"; gene_source "ensembl"; p_id "P23520"; transcript_id "ENSMUST00000096791"; transcript_name "Vmn2r122-202"; transcript_source "ensembl"; tss_id "TSS30817"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584292.1' not found in Genome fasta files for line: JH584292.1 protein_coding exon 3536 3826 . + . exon_id "ENSMUSE00001080738"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096730"; gene_name "Vmn2r122"; gene_source "ensembl"; p_id "P1987"; transcript_id "ENSMUST00000071277"; transcript_name "Vmn2r122-201"; transcript_source "ensembl"; tss_id "TSS30817"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584292.1' not found in Genome fasta files for line: JH584292.1 protein_coding exon 3536 3826 . + . exon_id "ENSMUSE00001080738"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096730"; gene_name "Vmn2r122"; gene_source "ensembl"; p_id "P34925"; transcript_id "ENSMUST00000179115"; transcript_name "Vmn2r122-205"; transcript_source "ensembl"; tss_id "TSS30817"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584292.1' not found in Genome fasta files for line: JH584292.1 protein_coding exon 3539 3826 . + . exon_id "ENSMUSE00000992318"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096730"; gene_name "Vmn2r122"; gene_source "ensembl"; p_id "P3412"; transcript_id "ENSMUST00000099422"; transcript_name "Vmn2r122-203"; transcript_source "ensembl"; tss_id "TSS30816"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584292.1' not found in Genome fasta files for line: JH584292.1 protein_coding exon 3573 3826 . + . exon_id "ENSMUSE00001084770"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096730"; gene_name "Vmn2r122"; gene_source "ensembl"; p_id "P3444"; transcript_id "ENSMUST00000178970"; transcript_name "Vmn2r122-204"; transcript_source "ensembl"; tss_id "TSS7975"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584292.1' not found in Genome fasta files for line: JH584292.1 protein_coding exon 5658 5940 . + . exon_id "ENSMUSE00001011233"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096730"; gene_name "Vmn2r122"; gene_source "ensembl"; p_id "P23520"; transcript_id "ENSMUST00000096791"; transcript_name "Vmn2r122-202"; transcript_source "ensembl"; tss_id "TSS30817"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584292.1' not found in Genome fasta files for line: JH584292.1 protein_coding exon 5658 5940 . + . exon_id "ENSMUSE00001011233"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096730"; gene_name "Vmn2r122"; gene_source "ensembl"; p_id "P1987"; transcript_id "ENSMUST00000071277"; transcript_name "Vmn2r122-201"; transcript_source "ensembl"; tss_id "TSS30817"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584292.1' not found in Genome fasta files for line: JH584292.1 protein_coding exon 5658 5940 . + . exon_id "ENSMUSE00001011233"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096730"; gene_name "Vmn2r122"; gene_source "ensembl"; p_id "P3444"; transcript_id "ENSMUST00000178970"; transcript_name "Vmn2r122-204"; transcript_source "ensembl"; tss_id "TSS7975"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584292.1' not found in Genome fasta files for line: JH584292.1 protein_coding exon 5658 5940 . + . exon_id "ENSMUSE00001011233"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096730"; gene_name "Vmn2r122"; gene_source "ensembl"; p_id "P34925"; transcript_id "ENSMUST00000179115"; transcript_name "Vmn2r122-205"; transcript_source "ensembl"; tss_id "TSS30817"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584292.1' not found in Genome fasta files for line: JH584292.1 protein_coding exon 6318 6746 . + . exon_id "ENSMUSE00000984583"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096730"; gene_name "Vmn2r122"; gene_source "ensembl"; p_id "P3444"; transcript_id "ENSMUST00000178970"; transcript_name "Vmn2r122-204"; transcript_source "ensembl"; tss_id "TSS7975"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584292.1' not found in Genome fasta files for line: JH584292.1 protein_coding exon 6318 7121 . + . exon_id "ENSMUSE00001019791"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096730"; gene_name "Vmn2r122"; gene_source "ensembl"; p_id "P23520"; transcript_id "ENSMUST00000096791"; transcript_name "Vmn2r122-202"; transcript_source "ensembl"; tss_id "TSS30817"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584292.1' not found in Genome fasta files for line: JH584292.1 protein_coding exon 6318 7121 . + . exon_id "ENSMUSE00001019791"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096730"; gene_name "Vmn2r122"; gene_source "ensembl"; p_id "P1987"; transcript_id "ENSMUST00000071277"; transcript_name "Vmn2r122-201"; transcript_source "ensembl"; tss_id "TSS30817"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584292.1' not found in Genome fasta files for line: JH584292.1 protein_coding exon 6318 7121 . + . exon_id "ENSMUSE00001019791"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096730"; gene_name "Vmn2r122"; gene_source "ensembl"; p_id "P34925"; transcript_id "ENSMUST00000179115"; transcript_name "Vmn2r122-205"; transcript_source "ensembl"; tss_id "TSS30817"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584292.1' not found in Genome fasta files for line: JH584292.1 protein_coding exon 6749 7121 . + . exon_id "ENSMUSE00001034775"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096730"; gene_name "Vmn2r122"; gene_source "ensembl"; p_id "P3444"; transcript_id "ENSMUST00000178970"; transcript_name "Vmn2r122-204"; transcript_source "ensembl"; tss_id "TSS7975"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584292.1' not found in Genome fasta files for line: JH584292.1 protein_coding exon 7960 8188 . + . exon_id "ENSMUSE00001060638"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096730"; gene_name "Vmn2r122"; gene_source "ensembl"; p_id "P23520"; transcript_id "ENSMUST00000096791"; transcript_name "Vmn2r122-202"; transcript_source "ensembl"; tss_id "TSS30817"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584292.1' not found in Genome fasta files for line: JH584292.1 protein_coding exon 7960 8188 . + . exon_id "ENSMUSE00001060638"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096730"; gene_name "Vmn2r122"; gene_source "ensembl"; p_id "P34925"; transcript_id "ENSMUST00000179115"; transcript_name "Vmn2r122-205"; transcript_source "ensembl"; tss_id "TSS30817"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584292.1' not found in Genome fasta files for line: JH584292.1 protein_coding exon 9312 9435 . + . exon_id "ENSMUSE00001291093"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096730"; gene_name "Vmn2r122"; gene_source "ensembl"; p_id "P1987"; transcript_id "ENSMUST00000071277"; transcript_name "Vmn2r122-201"; transcript_source "ensembl"; tss_id "TSS30817"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584292.1' not found in Genome fasta files for line: JH584292.1 protein_coding exon 9312 9435 . + . exon_id "ENSMUSE00001210878"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096730"; gene_name "Vmn2r122"; gene_source "ensembl"; p_id "P3444"; transcript_id "ENSMUST00000178970"; transcript_name "Vmn2r122-204"; transcript_source "ensembl"; tss_id "TSS7975"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584292.1' not found in Genome fasta files for line: JH584292.1 protein_coding exon 10590 11356 . + . exon_id "ENSMUSE00001207399"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096730"; gene_name "Vmn2r122"; gene_source "ensembl"; p_id "P23520"; transcript_id "ENSMUST00000096791"; transcript_name "Vmn2r122-202"; transcript_source "ensembl"; tss_id "TSS30817"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584292.1' not found in Genome fasta files for line: JH584292.1 protein_coding exon 10590 11356 . + . exon_id "ENSMUSE00001301642"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096730"; gene_name "Vmn2r122"; gene_source "ensembl"; p_id "P3412"; transcript_id "ENSMUST00000099422"; transcript_name "Vmn2r122-203"; transcript_source "ensembl"; tss_id "TSS30816"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584292.1' not found in Genome fasta files for line: JH584292.1 protein_coding exon 10590 11934 . + . exon_id "ENSMUSE00001074796"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096730"; gene_name "Vmn2r122"; gene_source "ensembl"; p_id "P3444"; transcript_id "ENSMUST00000178970"; transcript_name "Vmn2r122-204"; transcript_source "ensembl"; tss_id "TSS7975"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584292.1' not found in Genome fasta files for line: JH584292.1 protein_coding exon 10590 11935 . + . exon_id "ENSMUSE00001050372"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096730"; gene_name "Vmn2r122"; gene_source "ensembl"; p_id "P1987"; transcript_id "ENSMUST00000071277"; transcript_name "Vmn2r122-201"; transcript_source "ensembl"; tss_id "TSS30817"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584292.1' not found in Genome fasta files for line: JH584292.1 protein_coding exon 10590 11935 . + . exon_id "ENSMUSE00001050372"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096730"; gene_name "Vmn2r122"; gene_source "ensembl"; p_id "P34925"; transcript_id "ENSMUST00000179115"; transcript_name "Vmn2r122-205"; transcript_source "ensembl"; tss_id "TSS30817"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584292.1' not found in Genome fasta files for line: JH584292.1 protein_coding exon 11358 11606 . + . exon_id "ENSMUSE00001038315"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096730"; gene_name "Vmn2r122"; gene_source "ensembl"; p_id "P3412"; transcript_id "ENSMUST00000099422"; transcript_name "Vmn2r122-203"; transcript_source "ensembl"; tss_id "TSS30816"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584292.1' not found in Genome fasta files for line: JH584292.1 protein_coding exon 11358 11932 . + . exon_id "ENSMUSE00001020399"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096730"; gene_name "Vmn2r122"; gene_source "ensembl"; p_id "P23520"; transcript_id "ENSMUST00000096791"; transcript_name "Vmn2r122-202"; transcript_source "ensembl"; tss_id "TSS30817"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 4403 4798 . - . exon_id "ENSMUSE00000982308"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096155"; gene_name "CR974586.4"; gene_source "ensembl"; p_id "P10362"; transcript_id "ENSMUST00000180361"; transcript_name "CR974586.4-201"; transcript_source "ensembl"; tss_id "TSS44627"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 10948 11047 . + . exon_id "ENSMUSE00001068277"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095456"; gene_name "IL11RA2"; gene_source "ensembl"; p_id "P39361"; transcript_id "ENSMUST00000179253"; transcript_name "IL11RA2-201"; transcript_source "ensembl"; tss_id "TSS67549"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 11191 11251 . + . exon_id "ENSMUSE00001057144"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095456"; gene_name "IL11RA2"; gene_source "ensembl"; p_id "P39361"; transcript_id "ENSMUST00000179253"; transcript_name "IL11RA2-201"; transcript_source "ensembl"; tss_id "TSS67549"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 12077 12246 . + . exon_id "ENSMUSE00001067092"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095456"; gene_name "IL11RA2"; gene_source "ensembl"; p_id "P39361"; transcript_id "ENSMUST00000179253"; transcript_name "IL11RA2-201"; transcript_source "ensembl"; tss_id "TSS67549"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 12375 12489 . + . exon_id "ENSMUSE00001074882"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095456"; gene_name "IL11RA2"; gene_source "ensembl"; p_id "P39361"; transcript_id "ENSMUST00000179253"; transcript_name "IL11RA2-201"; transcript_source "ensembl"; tss_id "TSS67549"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 12643 12675 . + . exon_id "ENSMUSE00001001889"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095456"; gene_name "IL11RA2"; gene_source "ensembl"; p_id "P39361"; transcript_id "ENSMUST00000179253"; transcript_name "IL11RA2-201"; transcript_source "ensembl"; tss_id "TSS67549"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 12754 12920 . + . exon_id "ENSMUSE00000974911"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095456"; gene_name "IL11RA2"; gene_source "ensembl"; p_id "P39361"; transcript_id "ENSMUST00000179253"; transcript_name "IL11RA2-201"; transcript_source "ensembl"; tss_id "TSS67549"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 13477 13640 . + . exon_id "ENSMUSE00001047673"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095456"; gene_name "IL11RA2"; gene_source "ensembl"; p_id "P39361"; transcript_id "ENSMUST00000179253"; transcript_name "IL11RA2-201"; transcript_source "ensembl"; tss_id "TSS67549"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 14817 14958 . + . exon_id "ENSMUSE00001044703"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095456"; gene_name "IL11RA2"; gene_source "ensembl"; p_id "P39361"; transcript_id "ENSMUST00000179253"; transcript_name "IL11RA2-201"; transcript_source "ensembl"; tss_id "TSS67549"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 15304 15429 . + . exon_id "ENSMUSE00001004869"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095456"; gene_name "IL11RA2"; gene_source "ensembl"; p_id "P39361"; transcript_id "ENSMUST00000179253"; transcript_name "IL11RA2-201"; transcript_source "ensembl"; tss_id "TSS67549"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 15527 15623 . + . exon_id "ENSMUSE00000984010"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095456"; gene_name "IL11RA2"; gene_source "ensembl"; p_id "P39361"; transcript_id "ENSMUST00000179253"; transcript_name "IL11RA2-201"; transcript_source "ensembl"; tss_id "TSS67549"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 15851 15933 . + . exon_id "ENSMUSE00001072915"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095456"; gene_name "IL11RA2"; gene_source "ensembl"; p_id "P39361"; transcript_id "ENSMUST00000179253"; transcript_name "IL11RA2-201"; transcript_source "ensembl"; tss_id "TSS67549"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 16446 16486 . + . exon_id "ENSMUSE00001033203"; exon_number "12"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095456"; gene_name "IL11RA2"; gene_source "ensembl"; p_id "P39361"; transcript_id "ENSMUST00000179253"; transcript_name "IL11RA2-201"; transcript_source "ensembl"; tss_id "TSS67549"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 16864 17020 . - . exon_id "ENSMUSE00000964223"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095247"; gene_name "CCL27"; gene_source "ensembl"; p_id "P1159"; transcript_id "ENSMUST00000179871"; transcript_name "CCL27-205"; transcript_source "ensembl"; tss_id "TSS42242"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 16864 17020 . - . exon_id "ENSMUSE00000964223"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095247"; gene_name "CCL27"; gene_source "ensembl"; p_id "P42556"; transcript_id "ENSMUST00000179281"; transcript_name "CCL27-204"; transcript_source "ensembl"; tss_id "TSS58265"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 17210 17342 . - . exon_id "ENSMUSE00000999004"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095247"; gene_name "CCL27"; gene_source "ensembl"; p_id "P1159"; transcript_id "ENSMUST00000179871"; transcript_name "CCL27-205"; transcript_source "ensembl"; tss_id "TSS42242"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 17210 17342 . - . exon_id "ENSMUSE00000999004"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095247"; gene_name "CCL27"; gene_source "ensembl"; p_id "P42556"; transcript_id "ENSMUST00000179281"; transcript_name "CCL27-204"; transcript_source "ensembl"; tss_id "TSS58265"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 17484 17556 . - . exon_id "ENSMUSE00000971867"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095247"; gene_name "CCL27"; gene_source "ensembl"; p_id "P42556"; transcript_id "ENSMUST00000179281"; transcript_name "CCL27-204"; transcript_source "ensembl"; tss_id "TSS58265"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 18539 18636 . - . exon_id "ENSMUSE00001078060"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095247"; gene_name "CCL27"; gene_source "ensembl"; p_id "P1159"; transcript_id "ENSMUST00000179871"; transcript_name "CCL27-205"; transcript_source "ensembl"; tss_id "TSS42242"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 21235 21391 . - . exon_id "ENSMUSE00001086958"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095247"; gene_name "CCL27"; gene_source "ensembl"; p_id "P35548"; transcript_id "ENSMUST00000179008"; transcript_name "CCL27-203"; transcript_source "ensembl"; tss_id "TSS17803"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 21506 21525 . - . exon_id "ENSMUSE00000987232"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095247"; gene_name "CCL27"; gene_source "ensembl"; p_id "P1159"; transcript_id "ENSMUST00000179871"; transcript_name "CCL27-205"; transcript_source "ensembl"; tss_id "TSS42242"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 21506 21565 . - . exon_id "ENSMUSE00001064534"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095247"; gene_name "CCL27"; gene_source "ensembl"; p_id "P35548"; transcript_id "ENSMUST00000179008"; transcript_name "CCL27-203"; transcript_source "ensembl"; tss_id "TSS17803"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 21777 21820 . - . exon_id "ENSMUSE00000996180"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095247"; gene_name "CCL27"; gene_source "ensembl"; p_id "P35548"; transcript_id "ENSMUST00000179008"; transcript_name "CCL27-203"; transcript_source "ensembl"; tss_id "TSS17803"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 41602 41731 . - . exon_id "ENSMUSE00001000449"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095585"; gene_name "CR974586.2"; gene_source "ensembl"; p_id "P12523"; transcript_id "ENSMUST00000179075"; transcript_name "CR974586.2-201"; transcript_source "ensembl"; tss_id "TSS60425"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 41949 42081 . - . exon_id "ENSMUSE00001044618"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095585"; gene_name "CR974586.2"; gene_source "ensembl"; p_id "P12523"; transcript_id "ENSMUST00000179075"; transcript_name "CR974586.2-201"; transcript_source "ensembl"; tss_id "TSS60425"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 43066 43114 . - . exon_id "ENSMUSE00000977972"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095585"; gene_name "CR974586.2"; gene_source "ensembl"; p_id "P12523"; transcript_id "ENSMUST00000179075"; transcript_name "CR974586.2-201"; transcript_source "ensembl"; tss_id "TSS60425"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 60162 60192 . - . exon_id "ENSMUSE00001028644"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096873"; gene_name "Ccl21c"; gene_source "ensembl"; p_id "P40817"; transcript_id "ENSMUST00000178081"; transcript_name "Ccl21c-203"; transcript_source "ensembl"; tss_id "TSS49519"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 60275 60457 . - . exon_id "ENSMUSE00001039725"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096873"; gene_name "Ccl21c"; gene_source "ensembl"; p_id "P40817"; transcript_id "ENSMUST00000178081"; transcript_name "Ccl21c-203"; transcript_source "ensembl"; tss_id "TSS49519"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 60552 60672 . - . exon_id "ENSMUSE00001007569"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096873"; gene_name "Ccl21c"; gene_source "ensembl"; p_id "P40817"; transcript_id "ENSMUST00000178081"; transcript_name "Ccl21c-203"; transcript_source "ensembl"; tss_id "TSS49519"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 60761 60827 . - . exon_id "ENSMUSE00001073979"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096873"; gene_name "Ccl21c"; gene_source "ensembl"; p_id "P40817"; transcript_id "ENSMUST00000178081"; transcript_name "Ccl21c-203"; transcript_source "ensembl"; tss_id "TSS49519"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 83395 83415 . - . exon_id "ENSMUSE00000979486"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095755"; gene_name "CR974586.3"; gene_source "ensembl"; p_id "P2722"; transcript_id "ENSMUST00000178837"; transcript_name "CR974586.3-201"; transcript_source "ensembl"; tss_id "TSS55460"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 83588 84475 . - . exon_id "ENSMUSE00001048145"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095755"; gene_name "CR974586.3"; gene_source "ensembl"; p_id "P2722"; transcript_id "ENSMUST00000178837"; transcript_name "CR974586.3-201"; transcript_source "ensembl"; tss_id "TSS55460"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 86316 87710 . - . exon_id "ENSMUSE00001040469"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096646"; gene_name "CR974586.7"; gene_source "ensembl"; p_id "P6053"; transcript_id "ENSMUST00000178723"; transcript_name "CR974586.7-201"; transcript_source "ensembl"; tss_id "TSS62227"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 91391 91783 . + . exon_id "ENSMUSE00001076102"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095473"; gene_name "4930466F19RIK"; gene_source "ensembl"; p_id "P43638"; transcript_id "ENSMUST00000178091"; transcript_name "4930466F19RIK-202"; transcript_source "ensembl"; tss_id "TSS85021"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 103128 103176 . + . exon_id "ENSMUSE00001040040"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096506"; gene_name "CR974586.5"; gene_source "ensembl"; p_id "P39004"; transcript_id "ENSMUST00000115904"; transcript_name "CR974586.5-201"; transcript_source "ensembl"; tss_id "TSS9950"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 104150 104282 . + . exon_id "ENSMUSE00001020501"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096506"; gene_name "CR974586.5"; gene_source "ensembl"; p_id "P39004"; transcript_id "ENSMUST00000115904"; transcript_name "CR974586.5-201"; transcript_source "ensembl"; tss_id "TSS9950"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 104500 104629 . + . exon_id "ENSMUSE00000985645"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096506"; gene_name "CR974586.5"; gene_source "ensembl"; p_id "P39004"; transcript_id "ENSMUST00000115904"; transcript_name "CR974586.5-201"; transcript_source "ensembl"; tss_id "TSS9950"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 140144 140569 . - . exon_id "ENSMUSE00000965040"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096622"; gene_name "CR974586.6"; gene_source "ensembl"; p_id "P5730"; transcript_id "ENSMUST00000179681"; transcript_name "CR974586.6-201"; transcript_source "ensembl"; tss_id "TSS54304"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 140956 142665 . + . exon_id "ENSMUSE00001084572"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095552"; gene_name "OTTMUSG00000011338"; gene_source "ensembl"; p_id "P1881"; transcript_id "ENSMUST00000179644"; transcript_name "OTTMUSG00000011338-201"; transcript_source "ensembl"; tss_id "TSS70280"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584293.1' not found in Genome fasta files for line: JH584293.1 protein_coding exon 203931 206144 . - . exon_id "ENSMUSE00001021018"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095207"; gene_name "CR974586.1"; gene_source "ensembl"; p_id "P16032"; transcript_id "ENSMUST00000177766"; transcript_name "CR974586.1-201"; transcript_source "ensembl"; tss_id "TSS6459"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 2012 2111 . + . exon_id "ENSMUSE00001010607"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000093828"; gene_name "CCL27"; gene_source "ensembl"; p_id "P21337"; transcript_id "ENSMUST00000107987"; transcript_name "CCL27-201"; transcript_source "ensembl"; tss_id "TSS2955"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 3094 3166 . + . exon_id "ENSMUSE00000984034"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000093828"; gene_name "CCL27"; gene_source "ensembl"; p_id "P27882"; transcript_id "ENSMUST00000177905"; transcript_name "CCL27-202"; transcript_source "ensembl"; tss_id "TSS51244"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 3308 3440 . + . exon_id "ENSMUSE00001085938"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000093828"; gene_name "CCL27"; gene_source "ensembl"; p_id "P21337"; transcript_id "ENSMUST00000107987"; transcript_name "CCL27-201"; transcript_source "ensembl"; tss_id "TSS2955"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 3308 3440 . + . exon_id "ENSMUSE00001085938"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000093828"; gene_name "CCL27"; gene_source "ensembl"; p_id "P27882"; transcript_id "ENSMUST00000177905"; transcript_name "CCL27-202"; transcript_source "ensembl"; tss_id "TSS51244"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 3630 3786 . + . exon_id "ENSMUSE00000973583"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000093828"; gene_name "CCL27"; gene_source "ensembl"; p_id "P21337"; transcript_id "ENSMUST00000107987"; transcript_name "CCL27-201"; transcript_source "ensembl"; tss_id "TSS2955"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 3630 3786 . + . exon_id "ENSMUSE00000973583"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000093828"; gene_name "CCL27"; gene_source "ensembl"; p_id "P27882"; transcript_id "ENSMUST00000177905"; transcript_name "CCL27-202"; transcript_source "ensembl"; tss_id "TSS51244"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 4164 4204 . - . exon_id "ENSMUSE00001049022"; exon_number "12"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095623"; gene_name "IL11RA2"; gene_source "ensembl"; p_id "P18263"; transcript_id "ENSMUST00000179240"; transcript_name "IL11RA2-202"; transcript_source "ensembl"; tss_id "TSS6970"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 4717 4799 . - . exon_id "ENSMUSE00000965496"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095623"; gene_name "IL11RA2"; gene_source "ensembl"; p_id "P18263"; transcript_id "ENSMUST00000179240"; transcript_name "IL11RA2-202"; transcript_source "ensembl"; tss_id "TSS6970"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 5027 5123 . - . exon_id "ENSMUSE00001045529"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095623"; gene_name "IL11RA2"; gene_source "ensembl"; p_id "P18263"; transcript_id "ENSMUST00000179240"; transcript_name "IL11RA2-202"; transcript_source "ensembl"; tss_id "TSS6970"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 5221 5346 . - . exon_id "ENSMUSE00000982600"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095623"; gene_name "IL11RA2"; gene_source "ensembl"; p_id "P18263"; transcript_id "ENSMUST00000179240"; transcript_name "IL11RA2-202"; transcript_source "ensembl"; tss_id "TSS6970"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 5692 5833 . - . exon_id "ENSMUSE00001057042"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095623"; gene_name "IL11RA2"; gene_source "ensembl"; p_id "P18263"; transcript_id "ENSMUST00000179240"; transcript_name "IL11RA2-202"; transcript_source "ensembl"; tss_id "TSS6970"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 7010 7173 . - . exon_id "ENSMUSE00000964697"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095623"; gene_name "IL11RA2"; gene_source "ensembl"; p_id "P18263"; transcript_id "ENSMUST00000179240"; transcript_name "IL11RA2-202"; transcript_source "ensembl"; tss_id "TSS6970"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 7730 7896 . - . exon_id "ENSMUSE00001018864"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095623"; gene_name "IL11RA2"; gene_source "ensembl"; p_id "P18263"; transcript_id "ENSMUST00000179240"; transcript_name "IL11RA2-202"; transcript_source "ensembl"; tss_id "TSS6970"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 7975 8007 . - . exon_id "ENSMUSE00001048455"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095623"; gene_name "IL11RA2"; gene_source "ensembl"; p_id "P18263"; transcript_id "ENSMUST00000179240"; transcript_name "IL11RA2-202"; transcript_source "ensembl"; tss_id "TSS6970"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 8161 8275 . - . exon_id "ENSMUSE00001030476"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095623"; gene_name "IL11RA2"; gene_source "ensembl"; p_id "P18263"; transcript_id "ENSMUST00000179240"; transcript_name "IL11RA2-202"; transcript_source "ensembl"; tss_id "TSS6970"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 8404 8573 . - . exon_id "ENSMUSE00001011668"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095623"; gene_name "IL11RA2"; gene_source "ensembl"; p_id "P18263"; transcript_id "ENSMUST00000179240"; transcript_name "IL11RA2-202"; transcript_source "ensembl"; tss_id "TSS6970"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 9399 9459 . - . exon_id "ENSMUSE00001017433"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095623"; gene_name "IL11RA2"; gene_source "ensembl"; p_id "P18263"; transcript_id "ENSMUST00000179240"; transcript_name "IL11RA2-202"; transcript_source "ensembl"; tss_id "TSS6970"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 9603 9702 . - . exon_id "ENSMUSE00000997887"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095623"; gene_name "IL11RA2"; gene_source "ensembl"; p_id "P18263"; transcript_id "ENSMUST00000179240"; transcript_name "IL11RA2-202"; transcript_source "ensembl"; tss_id "TSS6970"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 15852 16247 . + . exon_id "ENSMUSE00000990345"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095391"; gene_name "CT868723.1"; gene_source "ensembl"; p_id "P4747"; transcript_id "ENSMUST00000180205"; transcript_name "CT868723.1-201"; transcript_source "ensembl"; tss_id "TSS18703"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 63267 63692 . + . exon_id "ENSMUSE00001058030"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096669"; gene_name "GM21955"; gene_source "ensembl"; p_id "P36255"; transcript_id "ENSMUST00000178716"; transcript_name "GM21955-201"; transcript_source "ensembl"; tss_id "TSS21159"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 102539 102577 . - . exon_id "ENSMUSE00000998834"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094661"; gene_name "CCL19"; gene_source "ensembl"; p_id "P27513"; transcript_id "ENSMUST00000118540"; transcript_name "CCL19-201"; transcript_source "ensembl"; tss_id "TSS85082"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 102666 102759 . - . exon_id "ENSMUSE00001036458"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094661"; gene_name "CCL19"; gene_source "ensembl"; p_id "P27513"; transcript_id "ENSMUST00000118540"; transcript_name "CCL19-201"; transcript_source "ensembl"; tss_id "TSS85082"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 102977 103109 . - . exon_id "ENSMUSE00001079341"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094661"; gene_name "CCL19"; gene_source "ensembl"; p_id "P27513"; transcript_id "ENSMUST00000118540"; transcript_name "CCL19-201"; transcript_source "ensembl"; tss_id "TSS85082"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 104079 104139 . - . exon_id "ENSMUSE00001000214"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094661"; gene_name "CCL19"; gene_source "ensembl"; p_id "P27513"; transcript_id "ENSMUST00000118540"; transcript_name "CCL19-201"; transcript_source "ensembl"; tss_id "TSS85082"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 121048 121078 . - . exon_id "ENSMUSE00001062735"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095320"; gene_name "CCL21A"; gene_source "ensembl"; p_id "P37890"; transcript_id "ENSMUST00000178919"; transcript_name "CCL21A-201"; transcript_source "ensembl"; tss_id "TSS25278"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 121161 121343 . - . exon_id "ENSMUSE00001045684"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095320"; gene_name "CCL21A"; gene_source "ensembl"; p_id "P37890"; transcript_id "ENSMUST00000178919"; transcript_name "CCL21A-201"; transcript_source "ensembl"; tss_id "TSS25278"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 121438 121558 . - . exon_id "ENSMUSE00000980655"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095320"; gene_name "CCL21A"; gene_source "ensembl"; p_id "P37890"; transcript_id "ENSMUST00000178919"; transcript_name "CCL21A-201"; transcript_source "ensembl"; tss_id "TSS25278"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 121647 121713 . - . exon_id "ENSMUSE00000993732"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095320"; gene_name "CCL21A"; gene_source "ensembl"; p_id "P37890"; transcript_id "ENSMUST00000178919"; transcript_name "CCL21A-201"; transcript_source "ensembl"; tss_id "TSS25278"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 137009 137560 . + . exon_id "ENSMUSE00001089676"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094350"; gene_name "Gm10931"; gene_source "ensembl"; p_id "P11780"; transcript_id "ENSMUST00000179627"; transcript_name "Gm10931-201"; transcript_source "ensembl"; tss_id "TSS64031"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 138344 138868 . - . exon_id "ENSMUSE00001031837"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096237"; gene_name "CT868723.2"; gene_source "ensembl"; p_id "P13236"; transcript_id "ENSMUST00000177565"; transcript_name "CT868723.2-201"; transcript_source "ensembl"; tss_id "TSS28236"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 138893 141917 . - . exon_id "ENSMUSE00000969305"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096237"; gene_name "CT868723.2"; gene_source "ensembl"; p_id "P13236"; transcript_id "ENSMUST00000177565"; transcript_name "CT868723.2-201"; transcript_source "ensembl"; tss_id "TSS28236"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 142569 142629 . - . exon_id "ENSMUSE00001073995"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096237"; gene_name "CT868723.2"; gene_source "ensembl"; p_id "P13236"; transcript_id "ENSMUST00000177565"; transcript_name "CT868723.2-201"; transcript_source "ensembl"; tss_id "TSS28236"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 143768 143813 . - . exon_id "ENSMUSE00001001585"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096237"; gene_name "CT868723.2"; gene_source "ensembl"; p_id "P13236"; transcript_id "ENSMUST00000177565"; transcript_name "CT868723.2-201"; transcript_source "ensembl"; tss_id "TSS28236"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584294.1' not found in Genome fasta files for line: JH584294.1 protein_coding exon 144414 144557 . - . exon_id "ENSMUSE00000997212"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096237"; gene_name "CT868723.2"; gene_source "ensembl"; p_id "P13236"; transcript_id "ENSMUST00000177565"; transcript_name "CT868723.2-201"; transcript_source "ensembl"; tss_id "TSS28236"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584295.1' not found in Genome fasta files for line: JH584295.1 protein_coding exon 66 109 . - . exon_id "ENSMUSE00001007635"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095742"; gene_name "CAAA01147332.1"; gene_source "ensembl"; p_id "P34259"; transcript_id "ENSMUST00000179436"; transcript_name "CAAA01147332.1-201"; transcript_source "ensembl"; tss_id "TSS33608"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584295.1' not found in Genome fasta files for line: JH584295.1 protein_coding exon 565 633 . - . exon_id "ENSMUSE00000997159"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095742"; gene_name "CAAA01147332.1"; gene_source "ensembl"; p_id "P34259"; transcript_id "ENSMUST00000179436"; transcript_name "CAAA01147332.1-201"; transcript_source "ensembl"; tss_id "TSS33608"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584295.1' not found in Genome fasta files for line: JH584295.1 protein_coding exon 708 752 . - . exon_id "ENSMUSE00001015770"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095742"; gene_name "CAAA01147332.1"; gene_source "ensembl"; p_id "P34259"; transcript_id "ENSMUST00000179436"; transcript_name "CAAA01147332.1-201"; transcript_source "ensembl"; tss_id "TSS33608"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584295.1' not found in Genome fasta files for line: JH584295.1 protein_coding exon 972 981 . - . exon_id "ENSMUSE00001070510"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095742"; gene_name "CAAA01147332.1"; gene_source "ensembl"; p_id "P34259"; transcript_id "ENSMUST00000179436"; transcript_name "CAAA01147332.1-201"; transcript_source "ensembl"; tss_id "TSS33608"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584295.1' not found in Genome fasta files for line: JH584295.1 protein_coding exon 986 1009 . - . exon_id "ENSMUSE00001085113"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095742"; gene_name "CAAA01147332.1"; gene_source "ensembl"; p_id "P34259"; transcript_id "ENSMUST00000179436"; transcript_name "CAAA01147332.1-201"; transcript_source "ensembl"; tss_id "TSS33608"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584295.1' not found in Genome fasta files for line: JH584295.1 protein_coding exon 1014 1024 . - . exon_id "ENSMUSE00001001528"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095742"; gene_name "CAAA01147332.1"; gene_source "ensembl"; p_id "P34259"; transcript_id "ENSMUST00000179436"; transcript_name "CAAA01147332.1-201"; transcript_source "ensembl"; tss_id "TSS33608"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584295.1' not found in Genome fasta files for line: JH584295.1 protein_coding exon 1440 1479 . - . exon_id "ENSMUSE00001007029"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095742"; gene_name "CAAA01147332.1"; gene_source "ensembl"; p_id "P34259"; transcript_id "ENSMUST00000179436"; transcript_name "CAAA01147332.1-201"; transcript_source "ensembl"; tss_id "TSS33608"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584296.1' not found in Genome fasta files for line: JH584296.1 protein_coding exon 41338 41905 . - . exon_id "ENSMUSE00001063215"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095666"; gene_name "AC164084.1"; gene_source "ensembl"; p_id "P12964"; transcript_id "ENSMUST00000178466"; transcript_name "AC164084.1-201"; transcript_source "ensembl"; tss_id "TSS31819"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584296.1' not found in Genome fasta files for line: JH584296.1 protein_coding exon 42876 43466 . - . exon_id "ENSMUSE00000998798"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095666"; gene_name "AC164084.1"; gene_source "ensembl"; p_id "P12964"; transcript_id "ENSMUST00000178466"; transcript_name "AC164084.1-201"; transcript_source "ensembl"; tss_id "TSS31819"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584296.1' not found in Genome fasta files for line: JH584296.1 protein_coding exon 44131 44417 . - . exon_id "ENSMUSE00001085755"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095666"; gene_name "AC164084.1"; gene_source "ensembl"; p_id "P12964"; transcript_id "ENSMUST00000178466"; transcript_name "AC164084.1-201"; transcript_source "ensembl"; tss_id "TSS31819"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584296.1' not found in Genome fasta files for line: JH584296.1 protein_coding exon 130715 131282 . - . exon_id "ENSMUSE00000996842"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096680"; gene_name "AC164084.2"; gene_source "ensembl"; p_id "P45922"; transcript_id "ENSMUST00000177991"; transcript_name "AC164084.2-201"; transcript_source "ensembl"; tss_id "TSS61764"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584296.1' not found in Genome fasta files for line: JH584296.1 protein_coding exon 132106 132693 . - . exon_id "ENSMUSE00001089215"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096680"; gene_name "AC164084.2"; gene_source "ensembl"; p_id "P45922"; transcript_id "ENSMUST00000177991"; transcript_name "AC164084.2-201"; transcript_source "ensembl"; tss_id "TSS61764"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584296.1' not found in Genome fasta files for line: JH584296.1 protein_coding exon 133162 133448 . - . exon_id "ENSMUSE00000975516"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096680"; gene_name "AC164084.2"; gene_source "ensembl"; p_id "P45922"; transcript_id "ENSMUST00000177991"; transcript_name "AC164084.2-201"; transcript_source "ensembl"; tss_id "TSS61764"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584296.1' not found in Genome fasta files for line: JH584296.1 protein_coding exon 195181 195748 . - . exon_id "ENSMUSE00001060849"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095505"; gene_name "AA792892"; gene_source "ensembl"; p_id "P9937"; transcript_id "ENSMUST00000178335"; transcript_name "AA792892-202"; transcript_source "ensembl"; tss_id "TSS75639"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584296.1' not found in Genome fasta files for line: JH584296.1 protein_coding exon 197635 197903 . - . exon_id "ENSMUSE00001079608"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095505"; gene_name "AA792892"; gene_source "ensembl"; p_id "P9937"; transcript_id "ENSMUST00000178335"; transcript_name "AA792892-202"; transcript_source "ensembl"; tss_id "TSS75639"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584297.1' not found in Genome fasta files for line: JH584297.1 protein_coding exon 19740 20082 . - . exon_id "ENSMUSE00001090600"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094303"; gene_name "AC165294.1"; gene_source "ensembl"; p_id "P3072"; transcript_id "ENSMUST00000110576"; transcript_name "AC165294.1-201"; transcript_source "ensembl"; tss_id "TSS28124"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584297.1' not found in Genome fasta files for line: JH584297.1 protein_coding exon 20907 21494 . - . exon_id "ENSMUSE00001044982"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094303"; gene_name "AC165294.1"; gene_source "ensembl"; p_id "P3072"; transcript_id "ENSMUST00000110576"; transcript_name "AC165294.1-201"; transcript_source "ensembl"; tss_id "TSS28124"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584297.1' not found in Genome fasta files for line: JH584297.1 protein_coding exon 21962 22248 . - . exon_id "ENSMUSE00000971417"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094303"; gene_name "AC165294.1"; gene_source "ensembl"; p_id "P3072"; transcript_id "ENSMUST00000110576"; transcript_name "AC165294.1-201"; transcript_source "ensembl"; tss_id "TSS28124"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584297.1' not found in Genome fasta files for line: JH584297.1 protein_coding exon 31101 31387 . + . exon_id "ENSMUSE00001014605"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096236"; gene_name "AC165294.2"; gene_source "ensembl"; p_id "P1683"; transcript_id "ENSMUST00000177853"; transcript_name "AC165294.2-201"; transcript_source "ensembl"; tss_id "TSS81859"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584297.1' not found in Genome fasta files for line: JH584297.1 protein_coding exon 31839 32429 . + . exon_id "ENSMUSE00001008958"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096236"; gene_name "AC165294.2"; gene_source "ensembl"; p_id "P1683"; transcript_id "ENSMUST00000177853"; transcript_name "AC165294.2-201"; transcript_source "ensembl"; tss_id "TSS81859"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584297.1' not found in Genome fasta files for line: JH584297.1 protein_coding exon 33325 33667 . + . exon_id "ENSMUSE00000978245"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096236"; gene_name "AC165294.2"; gene_source "ensembl"; p_id "P1683"; transcript_id "ENSMUST00000177853"; transcript_name "AC165294.2-201"; transcript_source "ensembl"; tss_id "TSS81859"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584297.1' not found in Genome fasta files for line: JH584297.1 protein_coding exon 108318 108885 . - . exon_id "ENSMUSE00001023314"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096756"; gene_name "AC165294.3"; gene_source "ensembl"; p_id "P41840"; transcript_id "ENSMUST00000177719"; transcript_name "AC165294.3-201"; transcript_source "ensembl"; tss_id "TSS39059"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584297.1' not found in Genome fasta files for line: JH584297.1 protein_coding exon 109853 110443 . - . exon_id "ENSMUSE00001022455"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096756"; gene_name "AC165294.3"; gene_source "ensembl"; p_id "P41840"; transcript_id "ENSMUST00000177719"; transcript_name "AC165294.3-201"; transcript_source "ensembl"; tss_id "TSS39059"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584297.1' not found in Genome fasta files for line: JH584297.1 protein_coding exon 111106 111392 . - . exon_id "ENSMUSE00001081998"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096756"; gene_name "AC165294.3"; gene_source "ensembl"; p_id "P41840"; transcript_id "ENSMUST00000177719"; transcript_name "AC165294.3-201"; transcript_source "ensembl"; tss_id "TSS39059"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584298.1' not found in Genome fasta files for line: JH584298.1 protein_coding exon 90528 90814 . + . exon_id "ENSMUSE00001049651"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094722"; gene_name "Gm7792"; gene_source "ensembl"; p_id "P9966"; transcript_id "ENSMUST00000180291"; transcript_name "Gm7792-202"; transcript_source "ensembl"; tss_id "TSS51676"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584298.1' not found in Genome fasta files for line: JH584298.1 protein_coding exon 91480 92070 . + . exon_id "ENSMUSE00001040892"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094722"; gene_name "Gm7792"; gene_source "ensembl"; p_id "P9966"; transcript_id "ENSMUST00000180291"; transcript_name "Gm7792-202"; transcript_source "ensembl"; tss_id "TSS51676"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584298.1' not found in Genome fasta files for line: JH584298.1 protein_coding exon 93056 93623 . + . exon_id "ENSMUSE00001079610"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094722"; gene_name "Gm7792"; gene_source "ensembl"; p_id "P9966"; transcript_id "ENSMUST00000180291"; transcript_name "Gm7792-202"; transcript_source "ensembl"; tss_id "TSS51676"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584298.1' not found in Genome fasta files for line: JH584298.1 protein_coding exon 168268 168610 . - . exon_id "ENSMUSE00001081306"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095728"; gene_name "AC125178.2"; gene_source "ensembl"; p_id "P7509"; transcript_id "ENSMUST00000179146"; transcript_name "AC125178.2-201"; transcript_source "ensembl"; tss_id "TSS54461"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584298.1' not found in Genome fasta files for line: JH584298.1 protein_coding exon 169506 169615 . - . exon_id "ENSMUSE00001035091"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095728"; gene_name "AC125178.2"; gene_source "ensembl"; p_id "P7509"; transcript_id "ENSMUST00000179146"; transcript_name "AC125178.2-201"; transcript_source "ensembl"; tss_id "TSS54461"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584298.1' not found in Genome fasta files for line: JH584298.1 protein_coding exon 169620 170097 . - . exon_id "ENSMUSE00001077460"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095728"; gene_name "AC125178.2"; gene_source "ensembl"; p_id "P7509"; transcript_id "ENSMUST00000179146"; transcript_name "AC125178.2-201"; transcript_source "ensembl"; tss_id "TSS54461"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584298.1' not found in Genome fasta files for line: JH584298.1 protein_coding exon 170552 170838 . - . exon_id "ENSMUSE00000990623"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095728"; gene_name "AC125178.2"; gene_source "ensembl"; p_id "P7509"; transcript_id "ENSMUST00000179146"; transcript_name "AC125178.2-201"; transcript_source "ensembl"; tss_id "TSS54461"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584298.1' not found in Genome fasta files for line: JH584298.1 protein_coding exon 179693 179749 . + . exon_id "ENSMUSE00000994457"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095076"; gene_name "AC125178.1"; gene_source "ensembl"; p_id "P35144"; transcript_id "ENSMUST00000177668"; transcript_name "AC125178.1-201"; transcript_source "ensembl"; tss_id "TSS27673"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584298.1' not found in Genome fasta files for line: JH584298.1 protein_coding exon 179755 179981 . + . exon_id "ENSMUSE00000967694"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095076"; gene_name "AC125178.1"; gene_source "ensembl"; p_id "P35144"; transcript_id "ENSMUST00000177668"; transcript_name "AC125178.1-201"; transcript_source "ensembl"; tss_id "TSS27673"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584298.1' not found in Genome fasta files for line: JH584298.1 protein_coding exon 180449 181036 . + . exon_id "ENSMUSE00001047968"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095076"; gene_name "AC125178.1"; gene_source "ensembl"; p_id "P35144"; transcript_id "ENSMUST00000177668"; transcript_name "AC125178.1-201"; transcript_source "ensembl"; tss_id "TSS27673"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584298.1' not found in Genome fasta files for line: JH584298.1 protein_coding exon 181861 182203 . + . exon_id "ENSMUSE00001031909"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095076"; gene_name "AC125178.1"; gene_source "ensembl"; p_id "P35144"; transcript_id "ENSMUST00000177668"; transcript_name "AC125178.1-201"; transcript_source "ensembl"; tss_id "TSS27673"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 4975 5243 . + . exon_id "ENSMUSE00001059832"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094836"; gene_name "GM6367"; gene_source "ensembl"; p_id "P20300"; transcript_id "ENSMUST00000097490"; transcript_name "GM6367-201"; transcript_source "ensembl"; tss_id "TSS35695"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 5735 6325 . + . exon_id "ENSMUSE00000988481"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094836"; gene_name "GM6367"; gene_source "ensembl"; p_id "P20300"; transcript_id "ENSMUST00000097490"; transcript_name "GM6367-201"; transcript_source "ensembl"; tss_id "TSS35695"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 7137 7356 . + . exon_id "ENSMUSE00000989108"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094836"; gene_name "GM6367"; gene_source "ensembl"; p_id "P20300"; transcript_id "ENSMUST00000097490"; transcript_name "GM6367-201"; transcript_source "ensembl"; tss_id "TSS35695"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 90482 90804 . + . exon_id "ENSMUSE00000985866"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094383"; gene_name "AC123873.1"; gene_source "ensembl"; p_id "P36043"; transcript_id "ENSMUST00000168953"; transcript_name "AC123873.1-201"; transcript_source "ensembl"; tss_id "TSS40343"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 91269 91859 . + . exon_id "ENSMUSE00001024193"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094383"; gene_name "AC123873.1"; gene_source "ensembl"; p_id "P36043"; transcript_id "ENSMUST00000168953"; transcript_name "AC123873.1-201"; transcript_source "ensembl"; tss_id "TSS40343"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 92653 93220 . + . exon_id "ENSMUSE00001052411"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094383"; gene_name "AC123873.1"; gene_source "ensembl"; p_id "P36043"; transcript_id "ENSMUST00000168953"; transcript_name "AC123873.1-201"; transcript_source "ensembl"; tss_id "TSS40343"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 173050 173336 . + . exon_id "ENSMUSE00000989659"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094474"; gene_name "Gm7792"; gene_source "ensembl"; p_id "P45100"; transcript_id "ENSMUST00000177582"; transcript_name "Gm7792-201"; transcript_source "ensembl"; tss_id "TSS64701"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 174000 174590 . + . exon_id "ENSMUSE00001020532"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094474"; gene_name "Gm7792"; gene_source "ensembl"; p_id "P45100"; transcript_id "ENSMUST00000177582"; transcript_name "Gm7792-201"; transcript_source "ensembl"; tss_id "TSS64701"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 175567 176134 . + . exon_id "ENSMUSE00000968270"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094474"; gene_name "Gm7792"; gene_source "ensembl"; p_id "P45100"; transcript_id "ENSMUST00000177582"; transcript_name "Gm7792-201"; transcript_source "ensembl"; tss_id "TSS64701"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 314841 315109 . + . exon_id "ENSMUSE00001078872"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094791"; gene_name "AC126035.1"; gene_source "ensembl"; p_id "P22528"; transcript_id "ENSMUST00000179677"; transcript_name "AC126035.1-201"; transcript_source "ensembl"; tss_id "TSS35794"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 317017 317584 . + . exon_id "ENSMUSE00000994631"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094791"; gene_name "AC126035.1"; gene_source "ensembl"; p_id "P22528"; transcript_id "ENSMUST00000179677"; transcript_name "AC126035.1-201"; transcript_source "ensembl"; tss_id "TSS35794"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 477246 477532 . + . exon_id "ENSMUSE00001043337"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096550"; gene_name "Gm16367"; gene_source "ensembl"; p_id "P26921"; transcript_id "ENSMUST00000178337"; transcript_name "Gm16367-201"; transcript_source "ensembl"; tss_id "TSS14862"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 478195 478785 . + . exon_id "ENSMUSE00001023291"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096550"; gene_name "Gm16367"; gene_source "ensembl"; p_id "P26921"; transcript_id "ENSMUST00000178337"; transcript_name "Gm16367-201"; transcript_source "ensembl"; tss_id "TSS14862"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 479764 480331 . + . exon_id "ENSMUSE00001087526"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096550"; gene_name "Gm16367"; gene_source "ensembl"; p_id "P26921"; transcript_id "ENSMUST00000178337"; transcript_name "Gm16367-201"; transcript_source "ensembl"; tss_id "TSS14862"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 562161 562447 . + . exon_id "ENSMUSE00000975605"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094172"; gene_name "AC163611.1"; gene_source "ensembl"; p_id "P1291"; transcript_id "ENSMUST00000177843"; transcript_name "AC163611.1-201"; transcript_source "ensembl"; tss_id "TSS70974"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 562913 563503 . + . exon_id "ENSMUSE00001033276"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094172"; gene_name "AC163611.1"; gene_source "ensembl"; p_id "P1291"; transcript_id "ENSMUST00000177843"; transcript_name "AC163611.1-201"; transcript_source "ensembl"; tss_id "TSS70974"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 564327 564894 . + . exon_id "ENSMUSE00000967624"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094172"; gene_name "AC163611.1"; gene_source "ensembl"; p_id "P1291"; transcript_id "ENSMUST00000177843"; transcript_name "AC163611.1-201"; transcript_source "ensembl"; tss_id "TSS70974"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 587624 587706 . + . exon_id "ENSMUSE00001051465"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094887"; gene_name "C87414"; gene_source "ensembl"; p_id "P44085"; transcript_id "ENSMUST00000179700"; transcript_name "C87414-201"; transcript_source "ensembl"; tss_id "TSS78810"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 621861 622154 . + . exon_id "ENSMUSE00000975102"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094887"; gene_name "C87414"; gene_source "ensembl"; p_id "P44085"; transcript_id "ENSMUST00000179700"; transcript_name "C87414-201"; transcript_source "ensembl"; tss_id "TSS78810"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 622646 623236 . + . exon_id "ENSMUSE00000965092"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094887"; gene_name "C87414"; gene_source "ensembl"; p_id "P44085"; transcript_id "ENSMUST00000179700"; transcript_name "C87414-201"; transcript_source "ensembl"; tss_id "TSS78810"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 624048 625594 . + . exon_id "ENSMUSE00001061232"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094887"; gene_name "C87414"; gene_source "ensembl"; p_id "P44085"; transcript_id "ENSMUST00000179700"; transcript_name "C87414-201"; transcript_source "ensembl"; tss_id "TSS78810"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 716296 716338 . + . exon_id "ENSMUSE00000888992"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000091585"; gene_name "AC140365.1"; gene_source "ensembl"; p_id "P23307"; transcript_id "ENSMUST00000165454"; transcript_name "AC140365.1-201"; transcript_source "ensembl"; tss_id "TSS87950"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 717804 718101 . + . exon_id "ENSMUSE00001061876"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000091585"; gene_name "AC140365.1"; gene_source "ensembl"; p_id "P23307"; transcript_id "ENSMUST00000165454"; transcript_name "AC140365.1-201"; transcript_source "ensembl"; tss_id "TSS87950"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 718566 719156 . + . exon_id "ENSMUSE00001015211"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000091585"; gene_name "AC140365.1"; gene_source "ensembl"; p_id "P23307"; transcript_id "ENSMUST00000165454"; transcript_name "AC140365.1-201"; transcript_source "ensembl"; tss_id "TSS87950"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 719950 720517 . + . exon_id "ENSMUSE00001063115"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000091585"; gene_name "AC140365.1"; gene_source "ensembl"; p_id "P23307"; transcript_id "ENSMUST00000165454"; transcript_name "AC140365.1-201"; transcript_source "ensembl"; tss_id "TSS87950"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 806210 806496 . + . exon_id "ENSMUSE00001067147"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095763"; gene_name "AC124606.1"; gene_source "ensembl"; p_id "P24025"; transcript_id "ENSMUST00000178318"; transcript_name "AC124606.1-201"; transcript_source "ensembl"; tss_id "TSS36526"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 807159 807749 . + . exon_id "ENSMUSE00001080208"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095763"; gene_name "AC124606.1"; gene_source "ensembl"; p_id "P24025"; transcript_id "ENSMUST00000178318"; transcript_name "AC124606.1-201"; transcript_source "ensembl"; tss_id "TSS36526"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 808714 809281 . + . exon_id "ENSMUSE00001020885"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095763"; gene_name "AC124606.1"; gene_source "ensembl"; p_id "P24025"; transcript_id "ENSMUST00000178318"; transcript_name "AC124606.1-201"; transcript_source "ensembl"; tss_id "TSS36526"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 837364 837650 . + . exon_id "ENSMUSE00001034960"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095523"; gene_name "Gm7792"; gene_source "ensembl"; p_id "P26525"; transcript_id "ENSMUST00000180303"; transcript_name "Gm7792-203"; transcript_source "ensembl"; tss_id "TSS41603"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 838318 838908 . + . exon_id "ENSMUSE00000967170"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095523"; gene_name "Gm7792"; gene_source "ensembl"; p_id "P26525"; transcript_id "ENSMUST00000180303"; transcript_name "Gm7792-203"; transcript_source "ensembl"; tss_id "TSS41603"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 839884 840451 . + . exon_id "ENSMUSE00001064872"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095523"; gene_name "Gm7792"; gene_source "ensembl"; p_id "P26525"; transcript_id "ENSMUST00000180303"; transcript_name "Gm7792-203"; transcript_source "ensembl"; tss_id "TSS41603"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 910289 910856 . - . exon_id "ENSMUSE00001050917"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095475"; gene_name "AC133095.2"; gene_source "ensembl"; p_id "P41584"; transcript_id "ENSMUST00000180208"; transcript_name "AC133095.2-201"; transcript_source "ensembl"; tss_id "TSS56729"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 911753 912343 . - . exon_id "ENSMUSE00001037457"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095475"; gene_name "AC133095.2"; gene_source "ensembl"; p_id "P41584"; transcript_id "ENSMUST00000180208"; transcript_name "AC133095.2-201"; transcript_source "ensembl"; tss_id "TSS56729"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 912797 913083 . - . exon_id "ENSMUSE00001045507"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095475"; gene_name "AC133095.2"; gene_source "ensembl"; p_id "P41584"; transcript_id "ENSMUST00000180208"; transcript_name "AC133095.2-201"; transcript_source "ensembl"; tss_id "TSS56729"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 921942 922228 . + . exon_id "ENSMUSE00001073060"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094855"; gene_name "AC133095.1"; gene_source "ensembl"; p_id "P10520"; transcript_id "ENSMUST00000178327"; transcript_name "AC133095.1-201"; transcript_source "ensembl"; tss_id "TSS36918"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 922694 923284 . + . exon_id "ENSMUSE00001050178"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094855"; gene_name "AC133095.1"; gene_source "ensembl"; p_id "P10520"; transcript_id "ENSMUST00000178327"; transcript_name "AC133095.1-201"; transcript_source "ensembl"; tss_id "TSS36918"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584299.1' not found in Genome fasta files for line: JH584299.1 protein_coding exon 924108 924675 . + . exon_id "ENSMUSE00001027513"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000094855"; gene_name "AC133095.1"; gene_source "ensembl"; p_id "P10520"; transcript_id "ENSMUST00000178327"; transcript_name "AC133095.1-201"; transcript_source "ensembl"; tss_id "TSS36918"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584303.1' not found in Genome fasta files for line: JH584303.1 protein_coding exon 81607 82689 . + . exon_id "ENSMUSE00001020092"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095019"; gene_name "AC234645.1"; gene_source "ensembl"; p_id "P41111"; transcript_id "ENSMUST00000178569"; transcript_name "AC234645.1-201"; transcript_source "ensembl"; tss_id "TSS11201"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584304.1' not found in Genome fasta files for line: JH584304.1 protein_coding exon 52190 52367 . - . exon_id "ENSMUSE00001057503"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095041"; gene_name "AC149090.1"; gene_source "ensembl"; p_id "P20645"; transcript_id "ENSMUST00000179505"; transcript_name "AC149090.1-201"; transcript_source "ensembl"; tss_id "TSS3659"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584304.1' not found in Genome fasta files for line: JH584304.1 protein_coding exon 52691 54867 . - . exon_id "ENSMUSE00001045433"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095041"; gene_name "AC149090.1"; gene_source "ensembl"; p_id "P20645"; transcript_id "ENSMUST00000178343"; transcript_name "AC149090.1-202"; transcript_source "ensembl"; tss_id "TSS73856"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584304.1' not found in Genome fasta files for line: JH584304.1 protein_coding exon 53536 54479 . - . exon_id "ENSMUSE00001047638"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095041"; gene_name "AC149090.1"; gene_source "ensembl"; p_id "P20645"; transcript_id "ENSMUST00000179505"; transcript_name "AC149090.1-201"; transcript_source "ensembl"; tss_id "TSS3659"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584304.1' not found in Genome fasta files for line: JH584304.1 protein_coding exon 54721 54867 . - . exon_id "ENSMUSE00001049168"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095041"; gene_name "AC149090.1"; gene_source "ensembl"; p_id "P20645"; transcript_id "ENSMUST00000179505"; transcript_name "AC149090.1-201"; transcript_source "ensembl"; tss_id "TSS3659"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584304.1' not found in Genome fasta files for line: JH584304.1 protein_coding exon 55112 55701 . - . exon_id "ENSMUSE00000986146"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095041"; gene_name "AC149090.1"; gene_source "ensembl"; p_id "P20645"; transcript_id "ENSMUST00000178343"; transcript_name "AC149090.1-202"; transcript_source "ensembl"; tss_id "TSS73856"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584304.1' not found in Genome fasta files for line: JH584304.1 protein_coding exon 55112 55701 . - . exon_id "ENSMUSE00000986146"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095041"; gene_name "AC149090.1"; gene_source "ensembl"; p_id "P20645"; transcript_id "ENSMUST00000179505"; transcript_name "AC149090.1-201"; transcript_source "ensembl"; tss_id "TSS3659"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584304.1' not found in Genome fasta files for line: JH584304.1 protein_coding exon 56986 57151 . - . exon_id "ENSMUSE00001053862"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095041"; gene_name "AC149090.1"; gene_source "ensembl"; p_id "P20645"; transcript_id "ENSMUST00000178343"; transcript_name "AC149090.1-202"; transcript_source "ensembl"; tss_id "TSS73856"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584304.1' not found in Genome fasta files for line: JH584304.1 protein_coding exon 56986 57151 . - . exon_id "ENSMUSE00001053862"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095041"; gene_name "AC149090.1"; gene_source "ensembl"; p_id "P20645"; transcript_id "ENSMUST00000179505"; transcript_name "AC149090.1-201"; transcript_source "ensembl"; tss_id "TSS3659"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584304.1' not found in Genome fasta files for line: JH584304.1 protein_coding exon 58564 58835 . - . exon_id "ENSMUSE00001002589"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095041"; gene_name "AC149090.1"; gene_source "ensembl"; p_id "P20645"; transcript_id "ENSMUST00000179505"; transcript_name "AC149090.1-201"; transcript_source "ensembl"; tss_id "TSS3659"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584304.1' not found in Genome fasta files for line: JH584304.1 protein_coding exon 58564 59690 . - . exon_id "ENSMUSE00001037709"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095041"; gene_name "AC149090.1"; gene_source "ensembl"; p_id "P20645"; transcript_id "ENSMUST00000178343"; transcript_name "AC149090.1-202"; transcript_source "ensembl"; tss_id "TSS73856"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'JH584304.1' not found in Genome fasta files for line: JH584304.1 protein_coding exon 59592 59667 . - . exon_id "ENSMUSE00000829265"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000095041"; gene_name "AC149090.1"; gene_source "ensembl"; p_id "P20645"; transcript_id "ENSMUST00000179505"; transcript_name "AC149090.1-201"; transcript_source "ensembl"; tss_id "TSS3659"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG132_PATCH' not found in Genome fasta files for line: MG132_PATCH protein_coding exon 124292991 124294101 . - . exon_id "ENSMUSE00001316829"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098810"; gene_name "CAAA01180111.1"; gene_source "ensembl"; p_id "P25900"; transcript_id "ENSMUST00000184310"; transcript_name "CAAA01180111.1-202"; transcript_source "ensembl"; tss_id "TSS29392"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG132_PATCH' not found in Genome fasta files for line: MG132_PATCH protein_coding exon 124292991 124294101 . - . exon_id "ENSMUSE00001316829"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098810"; gene_name "CAAA01180111.1"; gene_source "ensembl"; p_id "P21579"; transcript_id "ENSMUST00000184117"; transcript_name "CAAA01180111.1-201"; transcript_source "ensembl"; tss_id "TSS20232"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG132_PATCH' not found in Genome fasta files for line: MG132_PATCH protein_coding exon 124295098 124295158 . - . exon_id "ENSMUSE00001317587"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098810"; gene_name "CAAA01180111.1"; gene_source "ensembl"; p_id "P25900"; transcript_id "ENSMUST00000184310"; transcript_name "CAAA01180111.1-202"; transcript_source "ensembl"; tss_id "TSS29392"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG132_PATCH' not found in Genome fasta files for line: MG132_PATCH protein_coding exon 124295098 124295158 . - . exon_id "ENSMUSE00001317587"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098810"; gene_name "CAAA01180111.1"; gene_source "ensembl"; p_id "P21579"; transcript_id "ENSMUST00000184117"; transcript_name "CAAA01180111.1-201"; transcript_source "ensembl"; tss_id "TSS20232"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG132_PATCH' not found in Genome fasta files for line: MG132_PATCH protein_coding exon 124295358 124295484 . - . exon_id "ENSMUSE00001316246"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098810"; gene_name "CAAA01180111.1"; gene_source "ensembl"; p_id "P25900"; transcript_id "ENSMUST00000184310"; transcript_name "CAAA01180111.1-202"; transcript_source "ensembl"; tss_id "TSS29392"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG132_PATCH' not found in Genome fasta files for line: MG132_PATCH protein_coding exon 124295358 124295484 . - . exon_id "ENSMUSE00001316246"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098810"; gene_name "CAAA01180111.1"; gene_source "ensembl"; p_id "P21579"; transcript_id "ENSMUST00000184117"; transcript_name "CAAA01180111.1-201"; transcript_source "ensembl"; tss_id "TSS20232"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG132_PATCH' not found in Genome fasta files for line: MG132_PATCH protein_coding exon 124304656 124304718 . - . exon_id "ENSMUSE00001313687"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098810"; gene_name "CAAA01180111.1"; gene_source "ensembl"; p_id "P25900"; transcript_id "ENSMUST00000184310"; transcript_name "CAAA01180111.1-202"; transcript_source "ensembl"; tss_id "TSS29392"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG132_PATCH' not found in Genome fasta files for line: MG132_PATCH protein_coding exon 124311676 124311750 . - . exon_id "ENSMUSE00001315839"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098810"; gene_name "CAAA01180111.1"; gene_source "ensembl"; p_id "P21579"; transcript_id "ENSMUST00000184117"; transcript_name "CAAA01180111.1-201"; transcript_source "ensembl"; tss_id "TSS20232"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG132_PATCH' not found in Genome fasta files for line: MG132_PATCH protein_coding exon 124358303 124358471 . - . exon_id "ENSMUSE00001317277"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098512"; gene_name "NLRP4G"; gene_source "ensembl"; p_id "P12575"; transcript_id "ENSMUST00000183688"; transcript_name "NLRP4G-201"; transcript_source "ensembl"; tss_id "TSS2376"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG132_PATCH' not found in Genome fasta files for line: MG132_PATCH protein_coding exon 124358902 124359060 . - . exon_id "ENSMUSE00001313851"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098512"; gene_name "NLRP4G"; gene_source "ensembl"; p_id "P12575"; transcript_id "ENSMUST00000183688"; transcript_name "NLRP4G-201"; transcript_source "ensembl"; tss_id "TSS2376"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG132_PATCH' not found in Genome fasta files for line: MG132_PATCH protein_coding exon 124361888 124363500 . - . exon_id "ENSMUSE00001315212"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098512"; gene_name "NLRP4G"; gene_source "ensembl"; p_id "P12575"; transcript_id "ENSMUST00000183688"; transcript_name "NLRP4G-201"; transcript_source "ensembl"; tss_id "TSS2376"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG132_PATCH' not found in Genome fasta files for line: MG132_PATCH protein_coding exon 124422622 124422828 . - . exon_id "ENSMUSE00001315005"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099077"; gene_name "CAAA01154301.1"; gene_source "ensembl"; p_id "P32770"; transcript_id "ENSMUST00000184929"; transcript_name "CAAA01154301.1-201"; transcript_source "ensembl"; tss_id "TSS45232"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG132_PATCH' not found in Genome fasta files for line: MG132_PATCH protein_coding exon 124423912 124424154 . - . exon_id "ENSMUSE00001314128"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099077"; gene_name "CAAA01154301.1"; gene_source "ensembl"; p_id "P32770"; transcript_id "ENSMUST00000184929"; transcript_name "CAAA01154301.1-201"; transcript_source "ensembl"; tss_id "TSS45232"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG132_PATCH' not found in Genome fasta files for line: MG132_PATCH protein_coding exon 124428076 124428983 . - . exon_id "ENSMUSE00001314044"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099156"; gene_name "CAAA01154301.2"; gene_source "ensembl"; p_id "P23293"; transcript_id "ENSMUST00000183470"; transcript_name "CAAA01154301.2-201"; transcript_source "ensembl"; tss_id "TSS46247"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG132_PATCH' not found in Genome fasta files for line: MG132_PATCH protein_coding exon 124430146 124430265 . - . exon_id "ENSMUSE00001314673"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099156"; gene_name "CAAA01154301.2"; gene_source "ensembl"; p_id "P23293"; transcript_id "ENSMUST00000183470"; transcript_name "CAAA01154301.2-201"; transcript_source "ensembl"; tss_id "TSS46247"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG132_PATCH' not found in Genome fasta files for line: MG132_PATCH protein_coding exon 124431058 124431286 . - . exon_id "ENSMUSE00001314671"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099156"; gene_name "CAAA01154301.2"; gene_source "ensembl"; p_id "P23293"; transcript_id "ENSMUST00000183470"; transcript_name "CAAA01154301.2-201"; transcript_source "ensembl"; tss_id "TSS46247"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG132_PATCH' not found in Genome fasta files for line: MG132_PATCH protein_coding exon 124432624 124433430 . - . exon_id "ENSMUSE00001317924"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099156"; gene_name "CAAA01154301.2"; gene_source "ensembl"; p_id "P23293"; transcript_id "ENSMUST00000183470"; transcript_name "CAAA01154301.2-201"; transcript_source "ensembl"; tss_id "TSS46247"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG132_PATCH' not found in Genome fasta files for line: MG132_PATCH protein_coding exon 124433821 124434114 . - . exon_id "ENSMUSE00001314850"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099156"; gene_name "CAAA01154301.2"; gene_source "ensembl"; p_id "P23293"; transcript_id "ENSMUST00000183470"; transcript_name "CAAA01154301.2-201"; transcript_source "ensembl"; tss_id "TSS46247"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG132_PATCH' not found in Genome fasta files for line: MG132_PATCH protein_coding exon 124438996 124439151 . - . exon_id "ENSMUSE00001315900"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098256"; gene_name "CAAA01217562.1"; gene_source "ensembl"; p_id "P14611"; transcript_id "ENSMUST00000184298"; transcript_name "CAAA01217562.1-201"; transcript_source "ensembl"; tss_id "TSS80236"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG132_PATCH' not found in Genome fasta files for line: MG132_PATCH protein_coding exon 124439588 124439674 . - . exon_id "ENSMUSE00001314429"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098256"; gene_name "CAAA01217562.1"; gene_source "ensembl"; p_id "P14611"; transcript_id "ENSMUST00000184298"; transcript_name "CAAA01217562.1-201"; transcript_source "ensembl"; tss_id "TSS80236"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG132_PATCH' not found in Genome fasta files for line: MG132_PATCH protein_coding exon 124440048 124440122 . - . exon_id "ENSMUSE00001315450"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098256"; gene_name "CAAA01217562.1"; gene_source "ensembl"; p_id "P14611"; transcript_id "ENSMUST00000184298"; transcript_name "CAAA01217562.1-201"; transcript_source "ensembl"; tss_id "TSS80236"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG132_PATCH' not found in Genome fasta files for line: MG132_PATCH protein_coding exon 124440795 124440899 . - . exon_id "ENSMUSE00001316691"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098256"; gene_name "CAAA01217562.1"; gene_source "ensembl"; p_id "P14611"; transcript_id "ENSMUST00000184298"; transcript_name "CAAA01217562.1-201"; transcript_source "ensembl"; tss_id "TSS80236"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4035411 4035661 . - . exon_id "ENSMUSE00001101602"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097830"; gene_name "GSTP1"; gene_source "ensembl"; p_id "P5349"; transcript_id "ENSMUST00000180480"; transcript_name "GSTP1-201"; transcript_source "ensembl"; tss_id "TSS59508"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4035824 4035931 . - . exon_id "ENSMUSE00001144917"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097830"; gene_name "GSTP1"; gene_source "ensembl"; p_id "P5349"; transcript_id "ENSMUST00000180480"; transcript_name "GSTP1-201"; transcript_source "ensembl"; tss_id "TSS59508"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4036688 4036791 . - . exon_id "ENSMUSE00001202850"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097830"; gene_name "GSTP1"; gene_source "ensembl"; p_id "P5349"; transcript_id "ENSMUST00000180480"; transcript_name "GSTP1-201"; transcript_source "ensembl"; tss_id "TSS59508"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4037104 4037191 . - . exon_id "ENSMUSE00001118462"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097830"; gene_name "GSTP1"; gene_source "ensembl"; p_id "P5349"; transcript_id "ENSMUST00000180480"; transcript_name "GSTP1-201"; transcript_source "ensembl"; tss_id "TSS59508"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4037290 4037396 . - . exon_id "ENSMUSE00001204312"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097830"; gene_name "GSTP1"; gene_source "ensembl"; p_id "P5349"; transcript_id "ENSMUST00000180480"; transcript_name "GSTP1-201"; transcript_source "ensembl"; tss_id "TSS59508"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4037585 4037620 . - . exon_id "ENSMUSE00001127581"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097830"; gene_name "GSTP1"; gene_source "ensembl"; p_id "P5349"; transcript_id "ENSMUST00000180480"; transcript_name "GSTP1-201"; transcript_source "ensembl"; tss_id "TSS59508"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4037863 4037912 . - . exon_id "ENSMUSE00001185842"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097830"; gene_name "GSTP1"; gene_source "ensembl"; p_id "P5349"; transcript_id "ENSMUST00000180480"; transcript_name "GSTP1-201"; transcript_source "ensembl"; tss_id "TSS59508"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4040351 4040539 . - . exon_id "ENSMUSE00001107728"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097808"; gene_name "GSTP2"; gene_source "ensembl"; p_id "P370"; transcript_id "ENSMUST00000181010"; transcript_name "GSTP2-201"; transcript_source "ensembl"; tss_id "TSS39891"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4040708 4040815 . - . exon_id "ENSMUSE00001167481"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097808"; gene_name "GSTP2"; gene_source "ensembl"; p_id "P370"; transcript_id "ENSMUST00000181010"; transcript_name "GSTP2-201"; transcript_source "ensembl"; tss_id "TSS39891"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4040982 4041085 . - . exon_id "ENSMUSE00001145113"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097808"; gene_name "GSTP2"; gene_source "ensembl"; p_id "P370"; transcript_id "ENSMUST00000181010"; transcript_name "GSTP2-201"; transcript_source "ensembl"; tss_id "TSS39891"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4041398 4041485 . - . exon_id "ENSMUSE00001108776"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097808"; gene_name "GSTP2"; gene_source "ensembl"; p_id "P370"; transcript_id "ENSMUST00000181010"; transcript_name "GSTP2-201"; transcript_source "ensembl"; tss_id "TSS39891"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4041584 4041690 . - . exon_id "ENSMUSE00001157999"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097808"; gene_name "GSTP2"; gene_source "ensembl"; p_id "P370"; transcript_id "ENSMUST00000181010"; transcript_name "GSTP2-201"; transcript_source "ensembl"; tss_id "TSS39891"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4041903 4041938 . - . exon_id "ENSMUSE00001152692"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097808"; gene_name "GSTP2"; gene_source "ensembl"; p_id "P370"; transcript_id "ENSMUST00000181010"; transcript_name "GSTP2-201"; transcript_source "ensembl"; tss_id "TSS39891"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4042165 4042165 . - . exon_id "ENSMUSE00001120657"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097808"; gene_name "GSTP2"; gene_source "ensembl"; p_id "P370"; transcript_id "ENSMUST00000181010"; transcript_name "GSTP2-201"; transcript_source "ensembl"; tss_id "TSS39891"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4057478 4057718 . - . exon_id "ENSMUSE00001153614"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097663"; gene_name "AC109138.3"; gene_source "ensembl"; p_id "P6158"; transcript_id "ENSMUST00000180628"; transcript_name "AC109138.3-201"; transcript_source "ensembl"; tss_id "TSS77772"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4057888 4057995 . - . exon_id "ENSMUSE00001105083"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097663"; gene_name "AC109138.3"; gene_source "ensembl"; p_id "P6158"; transcript_id "ENSMUST00000180628"; transcript_name "AC109138.3-201"; transcript_source "ensembl"; tss_id "TSS77772"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4058086 4058189 . - . exon_id "ENSMUSE00001162065"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097663"; gene_name "AC109138.3"; gene_source "ensembl"; p_id "P6158"; transcript_id "ENSMUST00000180628"; transcript_name "AC109138.3-201"; transcript_source "ensembl"; tss_id "TSS77772"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4058529 4058616 . - . exon_id "ENSMUSE00001132707"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097663"; gene_name "AC109138.3"; gene_source "ensembl"; p_id "P6158"; transcript_id "ENSMUST00000180628"; transcript_name "AC109138.3-201"; transcript_source "ensembl"; tss_id "TSS77772"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4058735 4058841 . - . exon_id "ENSMUSE00001151922"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097663"; gene_name "AC109138.3"; gene_source "ensembl"; p_id "P6158"; transcript_id "ENSMUST00000180628"; transcript_name "AC109138.3-201"; transcript_source "ensembl"; tss_id "TSS77772"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4059259 4059295 . - . exon_id "ENSMUSE00001196645"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097663"; gene_name "AC109138.3"; gene_source "ensembl"; p_id "P6158"; transcript_id "ENSMUST00000180628"; transcript_name "AC109138.3-201"; transcript_source "ensembl"; tss_id "TSS77772"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH snoRNA exon 4078297 4078512 . - . exon_id "ENSMUSE00001314758"; exon_number "1"; gene_biotype "snoRNA"; gene_id "ENSMUSG00000098921"; gene_name "ACEA_U3"; gene_source "ensembl"; transcript_id "ENSMUST00000183806"; transcript_name "ACEA_U3.1-201"; transcript_source "ensembl"; tss_id "TSS70548"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH snoRNA exon 4078298 4078512 . - . exon_id "ENSMUSE00001095194"; exon_number "1"; gene_biotype "snoRNA"; gene_id "ENSMUSG00000097846"; gene_name "U3"; gene_source "ensembl"; transcript_id "ENSMUST00000181407"; transcript_name "U3.1-201"; transcript_source "ensembl"; tss_id "TSS70548"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4081578 4081607 . + . exon_id "ENSMUSE00001132032"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097733"; gene_name "CABP2"; gene_source "ensembl_havana"; p_id "P30838"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000181589"; transcript_name "CABP2-004"; transcript_source "havana"; tss_id "TSS45951"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4082488 4082867 . + . exon_id "ENSMUSE00001095368"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097733"; gene_name "CABP2"; gene_source "ensembl_havana"; p_id "P26464"; transcript_id "ENSMUST00000180578"; transcript_name "CABP2-003"; transcript_source "ensembl_havana"; tss_id "TSS82980"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4082660 4082867 . + . exon_id "ENSMUSE00001128162"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097733"; gene_name "CABP2"; gene_source "ensembl_havana"; p_id "P30838"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000181589"; transcript_name "CABP2-004"; transcript_source "havana"; tss_id "TSS45951"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4083490 4083616 . + . exon_id "ENSMUSE00001155313"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097733"; gene_name "CABP2"; gene_source "ensembl_havana"; p_id "P22103"; transcript_id "ENSMUST00000180694"; transcript_name "CABP2-002"; transcript_source "ensembl_havana"; tss_id "TSS35385"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4083519 4083616 . + . exon_id "ENSMUSE00001201673"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097733"; gene_name "CABP2"; gene_source "ensembl_havana"; p_id "P7184"; transcript_id "ENSMUST00000180961"; transcript_name "CABP2-001"; transcript_source "ensembl_havana"; tss_id "TSS3713"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4084087 4084245 . + . exon_id "ENSMUSE00001110373"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097733"; gene_name "CABP2"; gene_source "ensembl_havana"; p_id "P7184"; transcript_id "ENSMUST00000180961"; transcript_name "CABP2-001"; transcript_source "ensembl_havana"; tss_id "TSS3713"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4084878 4084908 . + . exon_id "ENSMUSE00001113335"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097733"; gene_name "CABP2"; gene_source "ensembl_havana"; p_id "P7184"; transcript_id "ENSMUST00000180961"; transcript_name "CABP2-001"; transcript_source "ensembl_havana"; tss_id "TSS3713"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4084878 4084908 . + . exon_id "ENSMUSE00001113335"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097733"; gene_name "CABP2"; gene_source "ensembl_havana"; p_id "P22103"; transcript_id "ENSMUST00000180694"; transcript_name "CABP2-002"; transcript_source "ensembl_havana"; tss_id "TSS35385"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4084878 4084908 . + . exon_id "ENSMUSE00001113335"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097733"; gene_name "CABP2"; gene_source "ensembl_havana"; p_id "P30838"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000181589"; transcript_name "CABP2-004"; transcript_source "havana"; tss_id "TSS45951"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4084878 4084908 . + . exon_id "ENSMUSE00001113335"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097733"; gene_name "CABP2"; gene_source "ensembl_havana"; p_id "P26464"; transcript_id "ENSMUST00000180578"; transcript_name "CABP2-003"; transcript_source "ensembl_havana"; tss_id "TSS82980"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4085559 4085676 . + . exon_id "ENSMUSE00001171502"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097733"; gene_name "CABP2"; gene_source "ensembl_havana"; p_id "P30838"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000181589"; transcript_name "CABP2-004"; transcript_source "havana"; tss_id "TSS45951"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4085559 4085693 . + . exon_id "ENSMUSE00001183130"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097733"; gene_name "CABP2"; gene_source "ensembl_havana"; p_id "P7184"; transcript_id "ENSMUST00000180961"; transcript_name "CABP2-001"; transcript_source "ensembl_havana"; tss_id "TSS3713"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4085559 4085693 . + . exon_id "ENSMUSE00001183130"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097733"; gene_name "CABP2"; gene_source "ensembl_havana"; p_id "P22103"; transcript_id "ENSMUST00000180694"; transcript_name "CABP2-002"; transcript_source "ensembl_havana"; tss_id "TSS35385"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4085559 4085693 . + . exon_id "ENSMUSE00001183130"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097733"; gene_name "CABP2"; gene_source "ensembl_havana"; p_id "P26464"; transcript_id "ENSMUST00000180578"; transcript_name "CABP2-003"; transcript_source "ensembl_havana"; tss_id "TSS82980"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4086218 4086327 . + . exon_id "ENSMUSE00001116064"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097733"; gene_name "CABP2"; gene_source "ensembl_havana"; p_id "P7184"; transcript_id "ENSMUST00000180961"; transcript_name "CABP2-001"; transcript_source "ensembl_havana"; tss_id "TSS3713"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4086218 4086327 . + . exon_id "ENSMUSE00001116064"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097733"; gene_name "CABP2"; gene_source "ensembl_havana"; p_id "P22103"; transcript_id "ENSMUST00000180694"; transcript_name "CABP2-002"; transcript_source "ensembl_havana"; tss_id "TSS35385"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4086218 4086327 . + . exon_id "ENSMUSE00001116064"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097733"; gene_name "CABP2"; gene_source "ensembl_havana"; p_id "P26464"; transcript_id "ENSMUST00000180578"; transcript_name "CABP2-003"; transcript_source "ensembl_havana"; tss_id "TSS82980"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4086448 4086595 . + . exon_id "ENSMUSE00001098310"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097733"; gene_name "CABP2"; gene_source "ensembl_havana"; p_id "P7184"; transcript_id "ENSMUST00000180961"; transcript_name "CABP2-001"; transcript_source "ensembl_havana"; tss_id "TSS3713"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4086448 4086595 . + . exon_id "ENSMUSE00001098310"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097733"; gene_name "CABP2"; gene_source "ensembl_havana"; p_id "P22103"; transcript_id "ENSMUST00000180694"; transcript_name "CABP2-002"; transcript_source "ensembl_havana"; tss_id "TSS35385"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4086448 4086595 . + . exon_id "ENSMUSE00001098310"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097733"; gene_name "CABP2"; gene_source "ensembl_havana"; p_id "P26464"; transcript_id "ENSMUST00000180578"; transcript_name "CABP2-003"; transcript_source "ensembl_havana"; tss_id "TSS82980"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4086475 4086595 . + . exon_id "ENSMUSE00001180991"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097733"; gene_name "CABP2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181024"; transcript_name "CABP2-005"; transcript_source "havana"; tss_id "TSS64226"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4087111 4087336 . + . exon_id "ENSMUSE00001162694"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097733"; gene_name "CABP2"; gene_source "ensembl_havana"; p_id "P26464"; transcript_id "ENSMUST00000180578"; transcript_name "CABP2-003"; transcript_source "ensembl_havana"; tss_id "TSS82980"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4087111 4087340 . + . exon_id "ENSMUSE00001164263"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097733"; gene_name "CABP2"; gene_source "ensembl_havana"; p_id "P7184"; transcript_id "ENSMUST00000180961"; transcript_name "CABP2-001"; transcript_source "ensembl_havana"; tss_id "TSS3713"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4087111 4087340 . + . exon_id "ENSMUSE00001164263"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097733"; gene_name "CABP2"; gene_source "ensembl_havana"; p_id "P22103"; transcript_id "ENSMUST00000180694"; transcript_name "CABP2-002"; transcript_source "ensembl_havana"; tss_id "TSS35385"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4087216 4087337 . + . exon_id "ENSMUSE00001154977"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097733"; gene_name "CABP2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181024"; transcript_name "CABP2-005"; transcript_source "havana"; tss_id "TSS64226"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4097182 4097507 . + . exon_id "ENSMUSE00001178355"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097485"; gene_name "CDK2AP2"; gene_source "ensembl_havana"; p_id "P45427"; transcript_id "ENSMUST00000180435"; transcript_name "CDK2AP2-001"; transcript_source "ensembl_havana"; tss_id "TSS43597"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4097401 4097507 . + . exon_id "ENSMUSE00001202500"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097485"; gene_name "CDK2AP2"; gene_source "ensembl_havana"; p_id "P23868"; transcript_id "ENSMUST00000180956"; transcript_name "CDK2AP2-002"; transcript_source "havana"; tss_id "TSS62472"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4097401 4097733 . + . exon_id "ENSMUSE00001140408"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097485"; gene_name "CDK2AP2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181040"; transcript_name "CDK2AP2-005"; transcript_source "havana"; tss_id "TSS62472"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4097402 4097507 . + . exon_id "ENSMUSE00001200017"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097485"; gene_name "CDK2AP2"; gene_source "ensembl_havana"; p_id "P34458"; transcript_id "ENSMUST00000181684"; transcript_name "CDK2AP2-004"; transcript_source "havana"; tss_id "TSS62473"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4097402 4097507 . + . exon_id "ENSMUSE00001200017"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097485"; gene_name "CDK2AP2"; gene_source "ensembl_havana"; p_id "P34458"; transcript_id "ENSMUST00000181806"; transcript_name "CDK2AP2-003"; transcript_source "havana"; tss_id "TSS62473"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4097817 4097907 . + . exon_id "ENSMUSE00001133828"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097485"; gene_name "CDK2AP2"; gene_source "ensembl_havana"; p_id "P34458"; transcript_id "ENSMUST00000181684"; transcript_name "CDK2AP2-004"; transcript_source "havana"; tss_id "TSS62473"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4097817 4097907 . + . exon_id "ENSMUSE00001133828"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097485"; gene_name "CDK2AP2"; gene_source "ensembl_havana"; p_id "P34458"; transcript_id "ENSMUST00000181806"; transcript_name "CDK2AP2-003"; transcript_source "havana"; tss_id "TSS62473"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4097817 4097917 . + . exon_id "ENSMUSE00001265870"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097485"; gene_name "CDK2AP2"; gene_source "ensembl_havana"; p_id "P23868"; transcript_id "ENSMUST00000180956"; transcript_name "CDK2AP2-002"; transcript_source "havana"; tss_id "TSS62472"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4097817 4097917 . + . exon_id "ENSMUSE00001265870"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097485"; gene_name "CDK2AP2"; gene_source "ensembl_havana"; p_id "P45427"; transcript_id "ENSMUST00000180435"; transcript_name "CDK2AP2-001"; transcript_source "ensembl_havana"; tss_id "TSS43597"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4097817 4097917 . + . exon_id "ENSMUSE00001290867"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097485"; gene_name "CDK2AP2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181040"; transcript_name "CDK2AP2-005"; transcript_source "havana"; tss_id "TSS62472"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4098005 4098137 . + . exon_id "ENSMUSE00001296504"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097485"; gene_name "CDK2AP2"; gene_source "ensembl_havana"; p_id "P34458"; transcript_id "ENSMUST00000181684"; transcript_name "CDK2AP2-004"; transcript_source "havana"; tss_id "TSS62473"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4098005 4098137 . + . exon_id "ENSMUSE00001235045"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097485"; gene_name "CDK2AP2"; gene_source "ensembl_havana"; p_id "P45427"; transcript_id "ENSMUST00000180435"; transcript_name "CDK2AP2-001"; transcript_source "ensembl_havana"; tss_id "TSS43597"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4098005 4098137 . + . exon_id "ENSMUSE00001275793"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097485"; gene_name "CDK2AP2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181040"; transcript_name "CDK2AP2-005"; transcript_source "havana"; tss_id "TSS62472"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4098005 4098193 . + . exon_id "ENSMUSE00001169594"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097485"; gene_name "CDK2AP2"; gene_source "ensembl_havana"; p_id "P34458"; transcript_id "ENSMUST00000181806"; transcript_name "CDK2AP2-003"; transcript_source "havana"; tss_id "TSS62473"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4098005 4098465 . + . exon_id "ENSMUSE00001097387"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097485"; gene_name "CDK2AP2"; gene_source "ensembl_havana"; p_id "P23868"; transcript_id "ENSMUST00000180956"; transcript_name "CDK2AP2-002"; transcript_source "havana"; tss_id "TSS62472"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4098498 4099010 . + . exon_id "ENSMUSE00001160588"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097485"; gene_name "CDK2AP2"; gene_source "ensembl_havana"; p_id "P34458"; transcript_id "ENSMUST00000181684"; transcript_name "CDK2AP2-004"; transcript_source "havana"; tss_id "TSS62473"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4098498 4099017 . + . exon_id "ENSMUSE00001147992"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097485"; gene_name "CDK2AP2"; gene_source "ensembl_havana"; p_id "P45427"; transcript_id "ENSMUST00000180435"; transcript_name "CDK2AP2-001"; transcript_source "ensembl_havana"; tss_id "TSS43597"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4098498 4099019 . + . exon_id "ENSMUSE00001185170"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097485"; gene_name "CDK2AP2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181040"; transcript_name "CDK2AP2-005"; transcript_source "havana"; tss_id "TSS62472"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4099998 4100213 . + . exon_id "ENSMUSE00001196165"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000180660"; transcript_name "PITPNM1-001"; transcript_source "ensembl_havana"; tss_id "TSS29021"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4100046 4100213 . + . exon_id "ENSMUSE00001126359"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181744"; transcript_name "PITPNM1-003"; transcript_source "havana"; tss_id "TSS78212"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4100269 4100514 . + . exon_id "ENSMUSE00001130998"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P12091"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000181798"; transcript_name "PITPNM1-004"; transcript_source "havana"; tss_id "TSS63974"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4100622 4101262 . + . exon_id "ENSMUSE00001175056"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000181715"; transcript_name "PITPNM1-002"; transcript_source "ensembl_havana"; tss_id "TSS43491"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4101144 4101262 . + . exon_id "ENSMUSE00001297590"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181744"; transcript_name "PITPNM1-003"; transcript_source "havana"; tss_id "TSS78212"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4101144 4101262 . + . exon_id "ENSMUSE00001249645"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P12091"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000181798"; transcript_name "PITPNM1-004"; transcript_source "havana"; tss_id "TSS63974"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4101144 4101262 . + . exon_id "ENSMUSE00001249645"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000180660"; transcript_name "PITPNM1-001"; transcript_source "ensembl_havana"; tss_id "TSS29021"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4102673 4102887 . + . exon_id "ENSMUSE00001311964"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181744"; transcript_name "PITPNM1-003"; transcript_source "havana"; tss_id "TSS78212"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4102673 4102887 . + . exon_id "ENSMUSE00001275837"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P12091"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000181798"; transcript_name "PITPNM1-004"; transcript_source "havana"; tss_id "TSS63974"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4102673 4102887 . + . exon_id "ENSMUSE00001275837"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000181715"; transcript_name "PITPNM1-002"; transcript_source "ensembl_havana"; tss_id "TSS43491"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4102673 4102887 . + . exon_id "ENSMUSE00001275837"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000180660"; transcript_name "PITPNM1-001"; transcript_source "ensembl_havana"; tss_id "TSS29021"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4102975 4103096 . + . exon_id "ENSMUSE00001287802"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181744"; transcript_name "PITPNM1-003"; transcript_source "havana"; tss_id "TSS78212"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4102975 4103096 . + . exon_id "ENSMUSE00001205861"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P12091"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000181798"; transcript_name "PITPNM1-004"; transcript_source "havana"; tss_id "TSS63974"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4102975 4103096 . + . exon_id "ENSMUSE00001205861"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000181715"; transcript_name "PITPNM1-002"; transcript_source "ensembl_havana"; tss_id "TSS43491"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4102975 4103096 . + . exon_id "ENSMUSE00001205861"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000180660"; transcript_name "PITPNM1-001"; transcript_source "ensembl_havana"; tss_id "TSS29021"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4103261 4103485 . + . exon_id "ENSMUSE00001267372"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181744"; transcript_name "PITPNM1-003"; transcript_source "havana"; tss_id "TSS78212"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4103261 4103485 . + . exon_id "ENSMUSE00001312092"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P12091"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000181798"; transcript_name "PITPNM1-004"; transcript_source "havana"; tss_id "TSS63974"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4103261 4103485 . + . exon_id "ENSMUSE00001312092"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000181715"; transcript_name "PITPNM1-002"; transcript_source "ensembl_havana"; tss_id "TSS43491"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4103261 4103485 . + . exon_id "ENSMUSE00001312092"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000180660"; transcript_name "PITPNM1-001"; transcript_source "ensembl_havana"; tss_id "TSS29021"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4104814 4104929 . + . exon_id "ENSMUSE00001112372"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P12091"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000181798"; transcript_name "PITPNM1-004"; transcript_source "havana"; tss_id "TSS63974"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4104814 4105140 . + . exon_id "ENSMUSE00001289283"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181744"; transcript_name "PITPNM1-003"; transcript_source "havana"; tss_id "TSS78212"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4104814 4105140 . + . exon_id "ENSMUSE00001262479"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000181715"; transcript_name "PITPNM1-002"; transcript_source "ensembl_havana"; tss_id "TSS43491"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4104814 4105140 . + . exon_id "ENSMUSE00001262479"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000180660"; transcript_name "PITPNM1-001"; transcript_source "ensembl_havana"; tss_id "TSS29021"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4105230 4105325 . + . exon_id "ENSMUSE00001222571"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181744"; transcript_name "PITPNM1-003"; transcript_source "havana"; tss_id "TSS78212"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4105230 4105325 . + . exon_id "ENSMUSE00001287785"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000181715"; transcript_name "PITPNM1-002"; transcript_source "ensembl_havana"; tss_id "TSS43491"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4105230 4105325 . + . exon_id "ENSMUSE00001287785"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000180660"; transcript_name "PITPNM1-001"; transcript_source "ensembl_havana"; tss_id "TSS29021"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4105415 4105522 . + . exon_id "ENSMUSE00001258118"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181744"; transcript_name "PITPNM1-003"; transcript_source "havana"; tss_id "TSS78212"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4105415 4105522 . + . exon_id "ENSMUSE00001276138"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000181715"; transcript_name "PITPNM1-002"; transcript_source "ensembl_havana"; tss_id "TSS43491"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4105415 4105522 . + . exon_id "ENSMUSE00001276138"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000180660"; transcript_name "PITPNM1-001"; transcript_source "ensembl_havana"; tss_id "TSS29021"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4106564 4106625 . + . exon_id "ENSMUSE00001302118"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181744"; transcript_name "PITPNM1-003"; transcript_source "havana"; tss_id "TSS78212"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4106564 4106625 . + . exon_id "ENSMUSE00001216077"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000181715"; transcript_name "PITPNM1-002"; transcript_source "ensembl_havana"; tss_id "TSS43491"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4106564 4106625 . + . exon_id "ENSMUSE00001216077"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000180660"; transcript_name "PITPNM1-001"; transcript_source "ensembl_havana"; tss_id "TSS29021"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4106712 4106962 . + . exon_id "ENSMUSE00001171600"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000181715"; transcript_name "PITPNM1-002"; transcript_source "ensembl_havana"; tss_id "TSS43491"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4106712 4106962 . + . exon_id "ENSMUSE00001171600"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000180660"; transcript_name "PITPNM1-001"; transcript_source "ensembl_havana"; tss_id "TSS29021"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4106712 4107975 . + . exon_id "ENSMUSE00001099172"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181744"; transcript_name "PITPNM1-003"; transcript_source "havana"; tss_id "TSS78212"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4107786 4107975 . + . exon_id "ENSMUSE00001154056"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000181715"; transcript_name "PITPNM1-002"; transcript_source "ensembl_havana"; tss_id "TSS43491"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4107786 4107975 . + . exon_id "ENSMUSE00001154056"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000180660"; transcript_name "PITPNM1-001"; transcript_source "ensembl_havana"; tss_id "TSS29021"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4108086 4108193 . + . exon_id "ENSMUSE00001230102"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181744"; transcript_name "PITPNM1-003"; transcript_source "havana"; tss_id "TSS78212"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4108086 4108193 . + . exon_id "ENSMUSE00001230998"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000181715"; transcript_name "PITPNM1-002"; transcript_source "ensembl_havana"; tss_id "TSS43491"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4108086 4108193 . + . exon_id "ENSMUSE00001230998"; exon_number "12"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000180660"; transcript_name "PITPNM1-001"; transcript_source "ensembl_havana"; tss_id "TSS29021"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4108204 4108580 . + . exon_id "ENSMUSE00001194352"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180607"; transcript_name "PITPNM1-005"; transcript_source "havana"; tss_id "TSS13688"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4108423 4108580 . + . exon_id "ENSMUSE00001262840"; exon_number "12"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181744"; transcript_name "PITPNM1-003"; transcript_source "havana"; tss_id "TSS78212"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4108423 4108580 . + . exon_id "ENSMUSE00001222112"; exon_number "12"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000181715"; transcript_name "PITPNM1-002"; transcript_source "ensembl_havana"; tss_id "TSS43491"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4108423 4108580 . + . exon_id "ENSMUSE00001222112"; exon_number "13"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000180660"; transcript_name "PITPNM1-001"; transcript_source "ensembl_havana"; tss_id "TSS29021"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4108665 4108867 . + . exon_id "ENSMUSE00001236059"; exon_number "13"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181744"; transcript_name "PITPNM1-003"; transcript_source "havana"; tss_id "TSS78212"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4108665 4108867 . + . exon_id "ENSMUSE00001236059"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180607"; transcript_name "PITPNM1-005"; transcript_source "havana"; tss_id "TSS13688"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4108665 4108867 . + . exon_id "ENSMUSE00001275179"; exon_number "13"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000181715"; transcript_name "PITPNM1-002"; transcript_source "ensembl_havana"; tss_id "TSS43491"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4108665 4108867 . + . exon_id "ENSMUSE00001275179"; exon_number "14"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000180660"; transcript_name "PITPNM1-001"; transcript_source "ensembl_havana"; tss_id "TSS29021"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4108752 4108827 . + . exon_id "ENSMUSE00001121890"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180760"; transcript_name "PITPNM1-006"; transcript_source "havana"; tss_id "TSS68794"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4109648 4109996 . + . exon_id "ENSMUSE00001193344"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181681"; transcript_name "PITPNM1-007"; transcript_source "havana"; tss_id "TSS64454"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4109826 4109907 . + . exon_id "ENSMUSE00001157720"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180607"; transcript_name "PITPNM1-005"; transcript_source "havana"; tss_id "TSS13688"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4109826 4109996 . + . exon_id "ENSMUSE00001258528"; exon_number "14"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181744"; transcript_name "PITPNM1-003"; transcript_source "havana"; tss_id "TSS78212"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4109826 4109996 . + . exon_id "ENSMUSE00001225077"; exon_number "14"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000181715"; transcript_name "PITPNM1-002"; transcript_source "ensembl_havana"; tss_id "TSS43491"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4109826 4109996 . + . exon_id "ENSMUSE00001225077"; exon_number "15"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000180660"; transcript_name "PITPNM1-001"; transcript_source "ensembl_havana"; tss_id "TSS29021"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4109927 4109996 . + . exon_id "ENSMUSE00001159846"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180760"; transcript_name "PITPNM1-006"; transcript_source "havana"; tss_id "TSS68794"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4110495 4110659 . + . exon_id "ENSMUSE00001218522"; exon_number "15"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181744"; transcript_name "PITPNM1-003"; transcript_source "havana"; tss_id "TSS78212"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4110495 4110659 . + . exon_id "ENSMUSE00001264492"; exon_number "15"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000181715"; transcript_name "PITPNM1-002"; transcript_source "ensembl_havana"; tss_id "TSS43491"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4110495 4110659 . + . exon_id "ENSMUSE00001264492"; exon_number "16"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000180660"; transcript_name "PITPNM1-001"; transcript_source "ensembl_havana"; tss_id "TSS29021"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4110495 4110659 . + . exon_id "ENSMUSE00001218522"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180760"; transcript_name "PITPNM1-006"; transcript_source "havana"; tss_id "TSS68794"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4110495 4110734 . + . exon_id "ENSMUSE00001139178"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181681"; transcript_name "PITPNM1-007"; transcript_source "havana"; tss_id "TSS64454"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4110800 4111189 . + . exon_id "ENSMUSE00001120647"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181372"; transcript_name "PITPNM1-008"; transcript_source "havana"; tss_id "TSS21595"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4110842 4110990 . + . exon_id "ENSMUSE00001254549"; exon_number "16"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181744"; transcript_name "PITPNM1-003"; transcript_source "havana"; tss_id "TSS78212"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4110842 4110990 . + . exon_id "ENSMUSE00001283865"; exon_number "16"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000181715"; transcript_name "PITPNM1-002"; transcript_source "ensembl_havana"; tss_id "TSS43491"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4110842 4110990 . + . exon_id "ENSMUSE00001283865"; exon_number "17"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000180660"; transcript_name "PITPNM1-001"; transcript_source "ensembl_havana"; tss_id "TSS29021"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4110948 4110990 . + . exon_id "ENSMUSE00001140340"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180760"; transcript_name "PITPNM1-006"; transcript_source "havana"; tss_id "TSS68794"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4111079 4111189 . + . exon_id "ENSMUSE00001208010"; exon_number "17"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181744"; transcript_name "PITPNM1-003"; transcript_source "havana"; tss_id "TSS78212"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4111079 4111189 . + . exon_id "ENSMUSE00001220743"; exon_number "17"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000181715"; transcript_name "PITPNM1-002"; transcript_source "ensembl_havana"; tss_id "TSS43491"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4111079 4111189 . + . exon_id "ENSMUSE00001220743"; exon_number "18"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000180660"; transcript_name "PITPNM1-001"; transcript_source "ensembl_havana"; tss_id "TSS29021"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4111079 4111189 . + . exon_id "ENSMUSE00001208010"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180760"; transcript_name "PITPNM1-006"; transcript_source "havana"; tss_id "TSS68794"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4111161 4111189 . + . exon_id "ENSMUSE00001183553"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180675"; transcript_name "PITPNM1-009"; transcript_source "havana"; tss_id "TSS7277"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4111582 4111698 . + . exon_id "ENSMUSE00001311980"; exon_number "18"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181744"; transcript_name "PITPNM1-003"; transcript_source "havana"; tss_id "TSS78212"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4111582 4111698 . + . exon_id "ENSMUSE00001294353"; exon_number "18"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000181715"; transcript_name "PITPNM1-002"; transcript_source "ensembl_havana"; tss_id "TSS43491"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4111582 4111698 . + . exon_id "ENSMUSE00001294353"; exon_number "19"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000180660"; transcript_name "PITPNM1-001"; transcript_source "ensembl_havana"; tss_id "TSS29021"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4111582 4111698 . + . exon_id "ENSMUSE00001311980"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180760"; transcript_name "PITPNM1-006"; transcript_source "havana"; tss_id "TSS68794"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4111582 4111698 . + . exon_id "ENSMUSE00001311980"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181372"; transcript_name "PITPNM1-008"; transcript_source "havana"; tss_id "TSS21595"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4111582 4112014 . + . exon_id "ENSMUSE00001116457"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180675"; transcript_name "PITPNM1-009"; transcript_source "havana"; tss_id "TSS7277"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4111866 4112014 . + . exon_id "ENSMUSE00001280799"; exon_number "19"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181744"; transcript_name "PITPNM1-003"; transcript_source "havana"; tss_id "TSS78212"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4111866 4112014 . + . exon_id "ENSMUSE00001286030"; exon_number "19"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000181715"; transcript_name "PITPNM1-002"; transcript_source "ensembl_havana"; tss_id "TSS43491"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4111866 4112014 . + . exon_id "ENSMUSE00001286030"; exon_number "20"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000180660"; transcript_name "PITPNM1-001"; transcript_source "ensembl_havana"; tss_id "TSS29021"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4111866 4112014 . + . exon_id "ENSMUSE00001280799"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180760"; transcript_name "PITPNM1-006"; transcript_source "havana"; tss_id "TSS68794"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4111866 4112024 . + . exon_id "ENSMUSE00001112601"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181372"; transcript_name "PITPNM1-008"; transcript_source "havana"; tss_id "TSS21595"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4111929 4112014 . + . exon_id "ENSMUSE00001155728"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181069"; transcript_name "PITPNM1-011"; transcript_source "havana"; tss_id "TSS25942"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4112101 4112217 . + . exon_id "ENSMUSE00001162841"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180760"; transcript_name "PITPNM1-006"; transcript_source "havana"; tss_id "TSS68794"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4112101 4112250 . + . exon_id "ENSMUSE00001289557"; exon_number "20"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181744"; transcript_name "PITPNM1-003"; transcript_source "havana"; tss_id "TSS78212"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4112101 4112250 . + . exon_id "ENSMUSE00001289557"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181069"; transcript_name "PITPNM1-011"; transcript_source "havana"; tss_id "TSS25942"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4112101 4112250 . + . exon_id "ENSMUSE00001209843"; exon_number "20"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000181715"; transcript_name "PITPNM1-002"; transcript_source "ensembl_havana"; tss_id "TSS43491"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4112101 4112250 . + . exon_id "ENSMUSE00001209843"; exon_number "21"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000180660"; transcript_name "PITPNM1-001"; transcript_source "ensembl_havana"; tss_id "TSS29021"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4112101 4112371 . + . exon_id "ENSMUSE00001145021"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180675"; transcript_name "PITPNM1-009"; transcript_source "havana"; tss_id "TSS7277"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4112320 4112876 . + . exon_id "ENSMUSE00001177825"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181468"; transcript_name "PITPNM1-010"; transcript_source "havana"; tss_id "TSS5596"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4112327 4112510 . + . exon_id "ENSMUSE00001215836"; exon_number "21"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181744"; transcript_name "PITPNM1-003"; transcript_source "havana"; tss_id "TSS78212"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4112327 4112510 . + . exon_id "ENSMUSE00001215836"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181069"; transcript_name "PITPNM1-011"; transcript_source "havana"; tss_id "TSS25942"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4112327 4112510 . + . exon_id "ENSMUSE00001283208"; exon_number "21"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000181715"; transcript_name "PITPNM1-002"; transcript_source "ensembl_havana"; tss_id "TSS43491"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4112327 4112510 . + . exon_id "ENSMUSE00001283208"; exon_number "22"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000180660"; transcript_name "PITPNM1-001"; transcript_source "ensembl_havana"; tss_id "TSS29021"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4112662 4112876 . + . exon_id "ENSMUSE00001190537"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181069"; transcript_name "PITPNM1-011"; transcript_source "havana"; tss_id "TSS25942"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4112748 4112876 . + . exon_id "ENSMUSE00001237986"; exon_number "22"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181744"; transcript_name "PITPNM1-003"; transcript_source "havana"; tss_id "TSS78212"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4112748 4112876 . + . exon_id "ENSMUSE00001254670"; exon_number "22"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000181715"; transcript_name "PITPNM1-002"; transcript_source "ensembl_havana"; tss_id "TSS43491"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4112748 4112876 . + . exon_id "ENSMUSE00001254670"; exon_number "23"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000180660"; transcript_name "PITPNM1-001"; transcript_source "ensembl_havana"; tss_id "TSS29021"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4113485 4113615 . + . exon_id "ENSMUSE00001161536"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181069"; transcript_name "PITPNM1-011"; transcript_source "havana"; tss_id "TSS25942"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4113485 4113965 . + . exon_id "ENSMUSE00001270902"; exon_number "23"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181744"; transcript_name "PITPNM1-003"; transcript_source "havana"; tss_id "TSS78212"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4113485 4113965 . + . exon_id "ENSMUSE00001270902"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181468"; transcript_name "PITPNM1-010"; transcript_source "havana"; tss_id "TSS5596"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4113485 4113965 . + . exon_id "ENSMUSE00001265923"; exon_number "23"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000181715"; transcript_name "PITPNM1-002"; transcript_source "ensembl_havana"; tss_id "TSS43491"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4113485 4113965 . + . exon_id "ENSMUSE00001265923"; exon_number "24"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097096"; gene_name "PITPNM1"; gene_source "ensembl_havana"; p_id "P15233"; transcript_id "ENSMUST00000180660"; transcript_name "PITPNM1-001"; transcript_source "ensembl_havana"; tss_id "TSS29021"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4114446 4114796 . - . exon_id "ENSMUSE00001118901"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097319"; gene_name "AIP"; gene_source "ensembl_havana"; p_id "P25674"; transcript_id "ENSMUST00000181243"; transcript_name "AIP-001"; transcript_source "ensembl_havana"; tss_id "TSS65991"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4114464 4114796 . - . exon_id "ENSMUSE00001192541"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097319"; gene_name "AIP"; gene_source "ensembl_havana"; p_id "P25674"; transcript_id "ENSMUST00000180758"; transcript_name "AIP-002"; transcript_source "havana"; tss_id "TSS20707"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4115081 4115222 . - . exon_id "ENSMUSE00001148223"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097319"; gene_name "AIP"; gene_source "ensembl_havana"; p_id "P25674"; transcript_id "ENSMUST00000181243"; transcript_name "AIP-001"; transcript_source "ensembl_havana"; tss_id "TSS65991"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4115081 4115222 . - . exon_id "ENSMUSE00001148223"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097319"; gene_name "AIP"; gene_source "ensembl_havana"; p_id "P25674"; transcript_id "ENSMUST00000180758"; transcript_name "AIP-002"; transcript_source "havana"; tss_id "TSS20707"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4115320 4115496 . - . exon_id "ENSMUSE00001175435"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097319"; gene_name "AIP"; gene_source "ensembl_havana"; p_id "P25674"; transcript_id "ENSMUST00000181243"; transcript_name "AIP-001"; transcript_source "ensembl_havana"; tss_id "TSS65991"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4115320 4115496 . - . exon_id "ENSMUSE00001175435"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097319"; gene_name "AIP"; gene_source "ensembl_havana"; p_id "P25674"; transcript_id "ENSMUST00000180758"; transcript_name "AIP-002"; transcript_source "havana"; tss_id "TSS20707"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4115447 4115496 . - . exon_id "ENSMUSE00001154905"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097319"; gene_name "AIP"; gene_source "ensembl_havana"; p_id "P33542"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000181061"; transcript_name "AIP-003"; transcript_source "havana"; tss_id "TSS68099"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4115982 4116170 . - . exon_id "ENSMUSE00001095317"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097319"; gene_name "AIP"; gene_source "ensembl_havana"; p_id "P25674"; transcript_id "ENSMUST00000181243"; transcript_name "AIP-001"; transcript_source "ensembl_havana"; tss_id "TSS65991"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4115982 4116170 . - . exon_id "ENSMUSE00001095317"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097319"; gene_name "AIP"; gene_source "ensembl_havana"; p_id "P33542"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000181061"; transcript_name "AIP-003"; transcript_source "havana"; tss_id "TSS68099"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4115982 4116170 . - . exon_id "ENSMUSE00001095317"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097319"; gene_name "AIP"; gene_source "ensembl_havana"; p_id "P25674"; transcript_id "ENSMUST00000180758"; transcript_name "AIP-002"; transcript_source "havana"; tss_id "TSS20707"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4118087 4118266 . - . exon_id "ENSMUSE00001131083"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097319"; gene_name "AIP"; gene_source "ensembl_havana"; p_id "P25674"; transcript_id "ENSMUST00000181243"; transcript_name "AIP-001"; transcript_source "ensembl_havana"; tss_id "TSS65991"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4118087 4118266 . - . exon_id "ENSMUSE00001131083"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097319"; gene_name "AIP"; gene_source "ensembl_havana"; p_id "P33542"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000181061"; transcript_name "AIP-003"; transcript_source "havana"; tss_id "TSS68099"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4118087 4118266 . - . exon_id "ENSMUSE00001131083"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097319"; gene_name "AIP"; gene_source "ensembl_havana"; p_id "P25674"; transcript_id "ENSMUST00000180758"; transcript_name "AIP-002"; transcript_source "havana"; tss_id "TSS20707"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4118256 4118266 . - . exon_id "ENSMUSE00001145160"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097319"; gene_name "AIP"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180814"; transcript_name "AIP-005"; transcript_source "havana"; tss_id "TSS69087"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4120933 4121545 . - . exon_id "ENSMUSE00001103370"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097319"; gene_name "AIP"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180644"; transcript_name "AIP-004"; transcript_source "havana"; tss_id "TSS59048"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4121336 4121545 . - . exon_id "ENSMUSE00001273464"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097319"; gene_name "AIP"; gene_source "ensembl_havana"; p_id "P25674"; transcript_id "ENSMUST00000181243"; transcript_name "AIP-001"; transcript_source "ensembl_havana"; tss_id "TSS65991"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4121336 4121545 . - . exon_id "ENSMUSE00001273464"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097319"; gene_name "AIP"; gene_source "ensembl_havana"; p_id "P33542"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000181061"; transcript_name "AIP-003"; transcript_source "havana"; tss_id "TSS68099"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4121336 4121545 . - . exon_id "ENSMUSE00001208425"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097319"; gene_name "AIP"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180814"; transcript_name "AIP-005"; transcript_source "havana"; tss_id "TSS69087"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4121336 4121575 . - . exon_id "ENSMUSE00001119229"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097319"; gene_name "AIP"; gene_source "ensembl_havana"; p_id "P25674"; transcript_id "ENSMUST00000180758"; transcript_name "AIP-002"; transcript_source "havana"; tss_id "TSS20707"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4124439 4124564 . - . exon_id "ENSMUSE00001183405"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097319"; gene_name "AIP"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180814"; transcript_name "AIP-005"; transcript_source "havana"; tss_id "TSS69087"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4125730 4125790 . - . exon_id "ENSMUSE00001098680"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097319"; gene_name "AIP"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180644"; transcript_name "AIP-004"; transcript_source "havana"; tss_id "TSS59048"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4125730 4125858 . - . exon_id "ENSMUSE00001107575"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097319"; gene_name "AIP"; gene_source "ensembl_havana"; p_id "P25674"; transcript_id "ENSMUST00000181243"; transcript_name "AIP-001"; transcript_source "ensembl_havana"; tss_id "TSS65991"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4125778 4125848 . - . exon_id "ENSMUSE00001105248"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097319"; gene_name "AIP"; gene_source "ensembl_havana"; p_id "P33542"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000181061"; transcript_name "AIP-003"; transcript_source "havana"; tss_id "TSS68099"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4125960 4126199 . + . exon_id "ENSMUSE00001187698"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097394"; gene_name "TMEM134"; gene_source "ensembl"; p_id "P5816"; transcript_id "ENSMUST00000181375"; transcript_name "TMEM134-201"; transcript_source "ensembl"; tss_id "TSS46689"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4127053 4127120 . + . exon_id "ENSMUSE00001128163"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097394"; gene_name "TMEM134"; gene_source "ensembl"; p_id "P5816"; transcript_id "ENSMUST00000181375"; transcript_name "TMEM134-201"; transcript_source "ensembl"; tss_id "TSS46689"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4127549 4127638 . + . exon_id "ENSMUSE00001157361"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097394"; gene_name "TMEM134"; gene_source "ensembl"; p_id "P5816"; transcript_id "ENSMUST00000181375"; transcript_name "TMEM134-201"; transcript_source "ensembl"; tss_id "TSS46689"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4127759 4127835 . + . exon_id "ENSMUSE00001137006"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097394"; gene_name "TMEM134"; gene_source "ensembl"; p_id "P5816"; transcript_id "ENSMUST00000181375"; transcript_name "TMEM134-201"; transcript_source "ensembl"; tss_id "TSS46689"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4131030 4131074 . + . exon_id "ENSMUSE00001119908"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097394"; gene_name "TMEM134"; gene_source "ensembl"; p_id "P5816"; transcript_id "ENSMUST00000181375"; transcript_name "TMEM134-201"; transcript_source "ensembl"; tss_id "TSS46689"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4131228 4131281 . + . exon_id "ENSMUSE00001175144"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097394"; gene_name "TMEM134"; gene_source "ensembl"; p_id "P5816"; transcript_id "ENSMUST00000181375"; transcript_name "TMEM134-201"; transcript_source "ensembl"; tss_id "TSS46689"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4131361 4132306 . + . exon_id "ENSMUSE00001149386"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097394"; gene_name "TMEM134"; gene_source "ensembl"; p_id "P5816"; transcript_id "ENSMUST00000181375"; transcript_name "TMEM134-201"; transcript_source "ensembl"; tss_id "TSS46689"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4135424 4136014 . - . exon_id "ENSMUSE00001145789"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097687"; gene_name "CABP4"; gene_source "ensembl"; p_id "P46839"; transcript_id "ENSMUST00000181080"; transcript_name "CABP4-201"; transcript_source "ensembl"; tss_id "TSS54645"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4136113 4136260 . - . exon_id "ENSMUSE00001103441"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097687"; gene_name "CABP4"; gene_source "ensembl"; p_id "P46839"; transcript_id "ENSMUST00000181080"; transcript_name "CABP4-201"; transcript_source "ensembl"; tss_id "TSS54645"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4137106 4137215 . - . exon_id "ENSMUSE00001190553"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097687"; gene_name "CABP4"; gene_source "ensembl"; p_id "P46839"; transcript_id "ENSMUST00000181080"; transcript_name "CABP4-201"; transcript_source "ensembl"; tss_id "TSS54645"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4138548 4138691 . - . exon_id "ENSMUSE00001160512"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097687"; gene_name "CABP4"; gene_source "ensembl"; p_id "P46839"; transcript_id "ENSMUST00000181080"; transcript_name "CABP4-201"; transcript_source "ensembl"; tss_id "TSS54645"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4138773 4138803 . - . exon_id "ENSMUSE00001137988"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097687"; gene_name "CABP4"; gene_source "ensembl"; p_id "P46839"; transcript_id "ENSMUST00000181080"; transcript_name "CABP4-201"; transcript_source "ensembl"; tss_id "TSS54645"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4139202 4139608 . - . exon_id "ENSMUSE00001098191"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097687"; gene_name "CABP4"; gene_source "ensembl"; p_id "P46839"; transcript_id "ENSMUST00000181080"; transcript_name "CABP4-201"; transcript_source "ensembl"; tss_id "TSS54645"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4139798 4140403 . + . exon_id "ENSMUSE00001162510"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097905"; gene_name "GPR152"; gene_source "ensembl"; p_id "P22795"; transcript_id "ENSMUST00000181548"; transcript_name "GPR152-201"; transcript_source "ensembl"; tss_id "TSS72391"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4142422 4145737 . + . exon_id "ENSMUSE00001137301"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097905"; gene_name "GPR152"; gene_source "ensembl"; p_id "P22795"; transcript_id "ENSMUST00000181548"; transcript_name "GPR152-201"; transcript_source "ensembl"; tss_id "TSS72391"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4148618 4148721 . + . exon_id "ENSMUSE00001126679"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; p_id "P2288"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000180620"; transcript_name "CORO1B-002"; transcript_source "havana"; tss_id "TSS59362"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4148618 4148735 . + . exon_id "ENSMUSE00001191030"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; p_id "P14097"; transcript_id "ENSMUST00000181494"; transcript_name "CORO1B-001"; transcript_source "ensembl_havana"; tss_id "TSS59362"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4148627 4148735 . + . exon_id "ENSMUSE00001179917"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180891"; transcript_name "CORO1B-003"; transcript_source "havana"; tss_id "TSS8194"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4148631 4148721 . + . exon_id "ENSMUSE00001190236"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181909"; transcript_name "CORO1B-004"; transcript_source "havana"; tss_id "TSS80222"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4148660 4148735 . + . exon_id "ENSMUSE00001139331"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180605"; transcript_name "CORO1B-005"; transcript_source "havana"; tss_id "TSS10218"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4148663 4148735 . + . exon_id "ENSMUSE00001096926"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181861"; transcript_name "CORO1B-006"; transcript_source "havana"; tss_id "TSS31035"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4149341 4149543 . + . exon_id "ENSMUSE00001237567"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; p_id "P2288"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000180620"; transcript_name "CORO1B-002"; transcript_source "havana"; tss_id "TSS59362"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4149341 4149543 . + . exon_id "ENSMUSE00001237567"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; p_id "P14097"; transcript_id "ENSMUST00000181494"; transcript_name "CORO1B-001"; transcript_source "ensembl_havana"; tss_id "TSS59362"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4149341 4149543 . + . exon_id "ENSMUSE00001208970"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181861"; transcript_name "CORO1B-006"; transcript_source "havana"; tss_id "TSS31035"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4149341 4149553 . + . exon_id "ENSMUSE00001198702"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180891"; transcript_name "CORO1B-003"; transcript_source "havana"; tss_id "TSS8194"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4149341 4149633 . + . exon_id "ENSMUSE00001161614"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181909"; transcript_name "CORO1B-004"; transcript_source "havana"; tss_id "TSS80222"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4149862 4149984 . + . exon_id "ENSMUSE00001310731"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; p_id "P2288"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000180620"; transcript_name "CORO1B-002"; transcript_source "havana"; tss_id "TSS59362"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4149862 4149984 . + . exon_id "ENSMUSE00001310731"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; p_id "P14097"; transcript_id "ENSMUST00000181494"; transcript_name "CORO1B-001"; transcript_source "ensembl_havana"; tss_id "TSS59362"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4149862 4149984 . + . exon_id "ENSMUSE00001236897"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181861"; transcript_name "CORO1B-006"; transcript_source "havana"; tss_id "TSS31035"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4149862 4149984 . + . exon_id "ENSMUSE00001236897"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180605"; transcript_name "CORO1B-005"; transcript_source "havana"; tss_id "TSS10218"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4150089 4150218 . + . exon_id "ENSMUSE00001281481"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; p_id "P2288"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000180620"; transcript_name "CORO1B-002"; transcript_source "havana"; tss_id "TSS59362"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4150089 4150218 . + . exon_id "ENSMUSE00001281481"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; p_id "P14097"; transcript_id "ENSMUST00000181494"; transcript_name "CORO1B-001"; transcript_source "ensembl_havana"; tss_id "TSS59362"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4150089 4150218 . + . exon_id "ENSMUSE00001253639"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180605"; transcript_name "CORO1B-005"; transcript_source "havana"; tss_id "TSS10218"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4150089 4150252 . + . exon_id "ENSMUSE00001128430"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181861"; transcript_name "CORO1B-006"; transcript_source "havana"; tss_id "TSS31035"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4150439 4150503 . + . exon_id "ENSMUSE00001188919"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; p_id "P2288"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000180620"; transcript_name "CORO1B-002"; transcript_source "havana"; tss_id "TSS59362"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4150439 4150620 . + . exon_id "ENSMUSE00001235654"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; p_id "P14097"; transcript_id "ENSMUST00000181494"; transcript_name "CORO1B-001"; transcript_source "ensembl_havana"; tss_id "TSS59362"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4150439 4150620 . + . exon_id "ENSMUSE00001228166"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180605"; transcript_name "CORO1B-005"; transcript_source "havana"; tss_id "TSS10218"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4150542 4150620 . + . exon_id "ENSMUSE00001157360"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180560"; transcript_name "CORO1B-007"; transcript_source "havana"; tss_id "TSS51607"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4150706 4150825 . + . exon_id "ENSMUSE00001209841"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180560"; transcript_name "CORO1B-007"; transcript_source "havana"; tss_id "TSS51607"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4150706 4150825 . + . exon_id "ENSMUSE00001270456"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; p_id "P14097"; transcript_id "ENSMUST00000181494"; transcript_name "CORO1B-001"; transcript_source "ensembl_havana"; tss_id "TSS59362"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4150706 4150825 . + . exon_id "ENSMUSE00001209841"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180605"; transcript_name "CORO1B-005"; transcript_source "havana"; tss_id "TSS10218"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4151369 4151498 . + . exon_id "ENSMUSE00001097396"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181608"; transcript_name "CORO1B-008"; transcript_source "havana"; tss_id "TSS87227"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4151394 4151498 . + . exon_id "ENSMUSE00001286658"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180560"; transcript_name "CORO1B-007"; transcript_source "havana"; tss_id "TSS51607"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4151394 4151498 . + . exon_id "ENSMUSE00001241637"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; p_id "P14097"; transcript_id "ENSMUST00000181494"; transcript_name "CORO1B-001"; transcript_source "ensembl_havana"; tss_id "TSS59362"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4151394 4151498 . + . exon_id "ENSMUSE00001286658"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180605"; transcript_name "CORO1B-005"; transcript_source "havana"; tss_id "TSS10218"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4151579 4151724 . + . exon_id "ENSMUSE00001265854"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180560"; transcript_name "CORO1B-007"; transcript_source "havana"; tss_id "TSS51607"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4151579 4151724 . + . exon_id "ENSMUSE00001250625"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; p_id "P14097"; transcript_id "ENSMUST00000181494"; transcript_name "CORO1B-001"; transcript_source "ensembl_havana"; tss_id "TSS59362"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4151579 4151724 . + . exon_id "ENSMUSE00001265854"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181219"; transcript_name "CORO1B-009"; transcript_source "havana"; tss_id "TSS51064"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4151579 4151724 . + . exon_id "ENSMUSE00001265854"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181608"; transcript_name "CORO1B-008"; transcript_source "havana"; tss_id "TSS87227"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4152521 4152578 . + . exon_id "ENSMUSE00001283153"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; p_id "P14097"; transcript_id "ENSMUST00000181494"; transcript_name "CORO1B-001"; transcript_source "ensembl_havana"; tss_id "TSS59362"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4152521 4152578 . + . exon_id "ENSMUSE00001230682"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181219"; transcript_name "CORO1B-009"; transcript_source "havana"; tss_id "TSS51064"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4152521 4152578 . + . exon_id "ENSMUSE00001230682"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181608"; transcript_name "CORO1B-008"; transcript_source "havana"; tss_id "TSS87227"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4152521 4152807 . + . exon_id "ENSMUSE00001149245"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180560"; transcript_name "CORO1B-007"; transcript_source "havana"; tss_id "TSS51607"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4153226 4153443 . + . exon_id "ENSMUSE00001150892"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181608"; transcript_name "CORO1B-008"; transcript_source "havana"; tss_id "TSS87227"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4153226 4153489 . + . exon_id "ENSMUSE00001175999"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; p_id "P14097"; transcript_id "ENSMUST00000181494"; transcript_name "CORO1B-001"; transcript_source "ensembl_havana"; tss_id "TSS59362"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4153226 4153660 . + . exon_id "ENSMUSE00001176448"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181219"; transcript_name "CORO1B-009"; transcript_source "havana"; tss_id "TSS51064"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4153596 4154034 . + . exon_id "ENSMUSE00001129742"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097771"; gene_name "CORO1B"; gene_source "ensembl_havana"; p_id "P14097"; transcript_id "ENSMUST00000181494"; transcript_name "CORO1B-001"; transcript_source "ensembl_havana"; tss_id "TSS59362"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4154605 4154702 . + . exon_id "ENSMUSE00001136735"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097132"; gene_name "PTPRCAP"; gene_source "ensembl_havana"; p_id "P932"; transcript_id "ENSMUST00000180710"; transcript_name "PTPRCAP-001"; transcript_source "ensembl_havana"; tss_id "TSS13804"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4155922 4156750 . + . exon_id "ENSMUSE00001121577"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097132"; gene_name "PTPRCAP"; gene_source "ensembl_havana"; p_id "P932"; transcript_id "ENSMUST00000180710"; transcript_name "PTPRCAP-001"; transcript_source "ensembl_havana"; tss_id "TSS13804"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4156712 4157198 . - . exon_id "ENSMUSE00001181619"; exon_number "15"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P40330"; transcript_id "ENSMUST00000181245"; transcript_name "RPS6KB2-001"; transcript_source "ensembl_havana"; tss_id "TSS58965"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4156791 4157198 . - . exon_id "ENSMUSE00001122801"; exon_number "15"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P37230"; transcript_id "ENSMUST00000181415"; transcript_name "RPS6KB2-004"; transcript_source "havana"; tss_id "TSS39907"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4156794 4157198 . - . exon_id "ENSMUSE00001160750"; exon_number "14"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181753"; transcript_name "RPS6KB2-002"; transcript_source "havana"; tss_id "TSS36141"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4156794 4157198 . - . exon_id "ENSMUSE00001160750"; exon_number "15"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P16631"; transcript_id "ENSMUST00000181844"; transcript_name "RPS6KB2-003"; transcript_source "havana"; tss_id "TSS39902"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4156794 4157198 . - . exon_id "ENSMUSE00001160750"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181544"; transcript_name "RPS6KB2-011"; transcript_source "havana"; tss_id "TSS22671"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4156985 4157198 . - . exon_id "ENSMUSE00001252146"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181386"; transcript_name "RPS6KB2-008"; transcript_source "havana"; tss_id "TSS67006"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4156985 4157198 . - . exon_id "ENSMUSE00001252146"; exon_number "14"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P6000"; transcript_id "ENSMUST00000180903"; transcript_name "RPS6KB2-005"; transcript_source "havana"; tss_id "TSS23497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4156985 4157198 . - . exon_id "ENSMUSE00001206288"; exon_number "14"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P46636"; transcript_id "ENSMUST00000181559"; transcript_name "RPS6KB2-006"; transcript_source "havana"; tss_id "TSS23497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4157481 4157593 . - . exon_id "ENSMUSE00001233282"; exon_number "13"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181753"; transcript_name "RPS6KB2-002"; transcript_source "havana"; tss_id "TSS36141"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4157481 4157593 . - . exon_id "ENSMUSE00001233282"; exon_number "14"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P16631"; transcript_id "ENSMUST00000181844"; transcript_name "RPS6KB2-003"; transcript_source "havana"; tss_id "TSS39902"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4157481 4157593 . - . exon_id "ENSMUSE00001233282"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181386"; transcript_name "RPS6KB2-008"; transcript_source "havana"; tss_id "TSS67006"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4157481 4157593 . - . exon_id "ENSMUSE00001233282"; exon_number "13"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P6000"; transcript_id "ENSMUST00000180903"; transcript_name "RPS6KB2-005"; transcript_source "havana"; tss_id "TSS23497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4157481 4157593 . - . exon_id "ENSMUSE00001233282"; exon_number "14"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P37230"; transcript_id "ENSMUST00000181415"; transcript_name "RPS6KB2-004"; transcript_source "havana"; tss_id "TSS39907"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4157481 4157593 . - . exon_id "ENSMUSE00001263844"; exon_number "14"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P40330"; transcript_id "ENSMUST00000181245"; transcript_name "RPS6KB2-001"; transcript_source "ensembl_havana"; tss_id "TSS58965"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4157681 4157788 . - . exon_id "ENSMUSE00001255611"; exon_number "12"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181753"; transcript_name "RPS6KB2-002"; transcript_source "havana"; tss_id "TSS36141"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4157681 4157788 . - . exon_id "ENSMUSE00001255611"; exon_number "13"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P16631"; transcript_id "ENSMUST00000181844"; transcript_name "RPS6KB2-003"; transcript_source "havana"; tss_id "TSS39902"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4157681 4157788 . - . exon_id "ENSMUSE00001255611"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181386"; transcript_name "RPS6KB2-008"; transcript_source "havana"; tss_id "TSS67006"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4157681 4157788 . - . exon_id "ENSMUSE00001255611"; exon_number "12"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P6000"; transcript_id "ENSMUST00000180903"; transcript_name "RPS6KB2-005"; transcript_source "havana"; tss_id "TSS23497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4157681 4157788 . - . exon_id "ENSMUSE00001255611"; exon_number "13"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P37230"; transcript_id "ENSMUST00000181415"; transcript_name "RPS6KB2-004"; transcript_source "havana"; tss_id "TSS39907"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4157681 4157788 . - . exon_id "ENSMUSE00001285917"; exon_number "13"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P40330"; transcript_id "ENSMUST00000181245"; transcript_name "RPS6KB2-001"; transcript_source "ensembl_havana"; tss_id "TSS58965"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4157681 4157788 . - . exon_id "ENSMUSE00001255611"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181544"; transcript_name "RPS6KB2-011"; transcript_source "havana"; tss_id "TSS22671"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4157681 4157788 . - . exon_id "ENSMUSE00001285917"; exon_number "13"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P46636"; transcript_id "ENSMUST00000181559"; transcript_name "RPS6KB2-006"; transcript_source "havana"; tss_id "TSS23497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4157878 4157955 . - . exon_id "ENSMUSE00001220168"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181753"; transcript_name "RPS6KB2-002"; transcript_source "havana"; tss_id "TSS36141"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4157878 4157955 . - . exon_id "ENSMUSE00001220168"; exon_number "12"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P16631"; transcript_id "ENSMUST00000181844"; transcript_name "RPS6KB2-003"; transcript_source "havana"; tss_id "TSS39902"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4157878 4157955 . - . exon_id "ENSMUSE00001220168"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181386"; transcript_name "RPS6KB2-008"; transcript_source "havana"; tss_id "TSS67006"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4157878 4157955 . - . exon_id "ENSMUSE00001220168"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P6000"; transcript_id "ENSMUST00000180903"; transcript_name "RPS6KB2-005"; transcript_source "havana"; tss_id "TSS23497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4157878 4157955 . - . exon_id "ENSMUSE00001220168"; exon_number "12"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P37230"; transcript_id "ENSMUST00000181415"; transcript_name "RPS6KB2-004"; transcript_source "havana"; tss_id "TSS39907"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4157878 4157955 . - . exon_id "ENSMUSE00001300023"; exon_number "12"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P40330"; transcript_id "ENSMUST00000181245"; transcript_name "RPS6KB2-001"; transcript_source "ensembl_havana"; tss_id "TSS58965"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4157878 4157955 . - . exon_id "ENSMUSE00001220168"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181544"; transcript_name "RPS6KB2-011"; transcript_source "havana"; tss_id "TSS22671"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4157878 4157955 . - . exon_id "ENSMUSE00001300023"; exon_number "12"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P46636"; transcript_id "ENSMUST00000181559"; transcript_name "RPS6KB2-006"; transcript_source "havana"; tss_id "TSS23497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4158065 4158127 . - . exon_id "ENSMUSE00001219508"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P16631"; transcript_id "ENSMUST00000181844"; transcript_name "RPS6KB2-003"; transcript_source "havana"; tss_id "TSS39902"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4158065 4158127 . - . exon_id "ENSMUSE00001219508"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181386"; transcript_name "RPS6KB2-008"; transcript_source "havana"; tss_id "TSS67006"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4158065 4158127 . - . exon_id "ENSMUSE00001241667"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P6000"; transcript_id "ENSMUST00000180903"; transcript_name "RPS6KB2-005"; transcript_source "havana"; tss_id "TSS23497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4158065 4158127 . - . exon_id "ENSMUSE00001205259"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P37230"; transcript_id "ENSMUST00000181415"; transcript_name "RPS6KB2-004"; transcript_source "havana"; tss_id "TSS39907"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4158065 4158127 . - . exon_id "ENSMUSE00001226860"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P40330"; transcript_id "ENSMUST00000181245"; transcript_name "RPS6KB2-001"; transcript_source "ensembl_havana"; tss_id "TSS58965"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4158065 4158127 . - . exon_id "ENSMUSE00001226860"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P46636"; transcript_id "ENSMUST00000181559"; transcript_name "RPS6KB2-006"; transcript_source "havana"; tss_id "TSS23497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4158065 4158151 . - . exon_id "ENSMUSE00001100687"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181544"; transcript_name "RPS6KB2-011"; transcript_source "havana"; tss_id "TSS22671"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4158065 4158362 . - . exon_id "ENSMUSE00001170624"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181753"; transcript_name "RPS6KB2-002"; transcript_source "havana"; tss_id "TSS36141"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4158609 4158716 . - . exon_id "ENSMUSE00001226314"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181386"; transcript_name "RPS6KB2-008"; transcript_source "havana"; tss_id "TSS67006"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4158609 4158716 . - . exon_id "ENSMUSE00001220037"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P37230"; transcript_id "ENSMUST00000181415"; transcript_name "RPS6KB2-004"; transcript_source "havana"; tss_id "TSS39907"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4158609 4158716 . - . exon_id "ENSMUSE00001242571"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P40330"; transcript_id "ENSMUST00000181245"; transcript_name "RPS6KB2-001"; transcript_source "ensembl_havana"; tss_id "TSS58965"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4158609 4158716 . - . exon_id "ENSMUSE00001242571"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P46636"; transcript_id "ENSMUST00000181559"; transcript_name "RPS6KB2-006"; transcript_source "havana"; tss_id "TSS23497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4158609 4158918 . - . exon_id "ENSMUSE00001198923"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181753"; transcript_name "RPS6KB2-002"; transcript_source "havana"; tss_id "TSS36141"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4158609 4158918 . - . exon_id "ENSMUSE00001198923"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P16631"; transcript_id "ENSMUST00000181844"; transcript_name "RPS6KB2-003"; transcript_source "havana"; tss_id "TSS39902"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4158802 4158918 . - . exon_id "ENSMUSE00001192508"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P37230"; transcript_id "ENSMUST00000181415"; transcript_name "RPS6KB2-004"; transcript_source "havana"; tss_id "TSS39907"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4158824 4158918 . - . exon_id "ENSMUSE00001123395"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P6000"; transcript_id "ENSMUST00000180903"; transcript_name "RPS6KB2-005"; transcript_source "havana"; tss_id "TSS23497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4158828 4158918 . - . exon_id "ENSMUSE00001221673"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181386"; transcript_name "RPS6KB2-008"; transcript_source "havana"; tss_id "TSS67006"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4158828 4158918 . - . exon_id "ENSMUSE00001210478"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P40330"; transcript_id "ENSMUST00000181245"; transcript_name "RPS6KB2-001"; transcript_source "ensembl_havana"; tss_id "TSS58965"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4158828 4158918 . - . exon_id "ENSMUSE00001210478"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P46636"; transcript_id "ENSMUST00000181559"; transcript_name "RPS6KB2-006"; transcript_source "havana"; tss_id "TSS23497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4159002 4159092 . - . exon_id "ENSMUSE00001209001"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181753"; transcript_name "RPS6KB2-002"; transcript_source "havana"; tss_id "TSS36141"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4159002 4159092 . - . exon_id "ENSMUSE00001209001"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P16631"; transcript_id "ENSMUST00000181844"; transcript_name "RPS6KB2-003"; transcript_source "havana"; tss_id "TSS39902"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4159002 4159092 . - . exon_id "ENSMUSE00001209001"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181386"; transcript_name "RPS6KB2-008"; transcript_source "havana"; tss_id "TSS67006"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4159002 4159092 . - . exon_id "ENSMUSE00001255614"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P6000"; transcript_id "ENSMUST00000180903"; transcript_name "RPS6KB2-005"; transcript_source "havana"; tss_id "TSS23497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4159002 4159092 . - . exon_id "ENSMUSE00001255614"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P37230"; transcript_id "ENSMUST00000181415"; transcript_name "RPS6KB2-004"; transcript_source "havana"; tss_id "TSS39907"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4159002 4159092 . - . exon_id "ENSMUSE00001255614"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P40330"; transcript_id "ENSMUST00000181245"; transcript_name "RPS6KB2-001"; transcript_source "ensembl_havana"; tss_id "TSS58965"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4159002 4159092 . - . exon_id "ENSMUSE00001255614"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P46636"; transcript_id "ENSMUST00000181559"; transcript_name "RPS6KB2-006"; transcript_source "havana"; tss_id "TSS23497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4159226 4159326 . - . exon_id "ENSMUSE00001244953"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181753"; transcript_name "RPS6KB2-002"; transcript_source "havana"; tss_id "TSS36141"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4159226 4159326 . - . exon_id "ENSMUSE00001244953"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P16631"; transcript_id "ENSMUST00000181844"; transcript_name "RPS6KB2-003"; transcript_source "havana"; tss_id "TSS39902"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4159226 4159326 . - . exon_id "ENSMUSE00001240496"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P6000"; transcript_id "ENSMUST00000180903"; transcript_name "RPS6KB2-005"; transcript_source "havana"; tss_id "TSS23497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4159226 4159326 . - . exon_id "ENSMUSE00001240496"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P37230"; transcript_id "ENSMUST00000181415"; transcript_name "RPS6KB2-004"; transcript_source "havana"; tss_id "TSS39907"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4159226 4159326 . - . exon_id "ENSMUSE00001240496"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P40330"; transcript_id "ENSMUST00000181245"; transcript_name "RPS6KB2-001"; transcript_source "ensembl_havana"; tss_id "TSS58965"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4159226 4159326 . - . exon_id "ENSMUSE00001240496"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P46636"; transcript_id "ENSMUST00000181559"; transcript_name "RPS6KB2-006"; transcript_source "havana"; tss_id "TSS23497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4159402 4159459 . - . exon_id "ENSMUSE00001299974"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181753"; transcript_name "RPS6KB2-002"; transcript_source "havana"; tss_id "TSS36141"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4159402 4159459 . - . exon_id "ENSMUSE00001299974"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P16631"; transcript_id "ENSMUST00000181844"; transcript_name "RPS6KB2-003"; transcript_source "havana"; tss_id "TSS39902"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4159402 4159459 . - . exon_id "ENSMUSE00001299974"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181386"; transcript_name "RPS6KB2-008"; transcript_source "havana"; tss_id "TSS67006"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4159402 4159459 . - . exon_id "ENSMUSE00001211864"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P6000"; transcript_id "ENSMUST00000180903"; transcript_name "RPS6KB2-005"; transcript_source "havana"; tss_id "TSS23497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4159402 4159459 . - . exon_id "ENSMUSE00001211864"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P37230"; transcript_id "ENSMUST00000181415"; transcript_name "RPS6KB2-004"; transcript_source "havana"; tss_id "TSS39907"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4159402 4159459 . - . exon_id "ENSMUSE00001211864"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P40330"; transcript_id "ENSMUST00000181245"; transcript_name "RPS6KB2-001"; transcript_source "ensembl_havana"; tss_id "TSS58965"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4159402 4159459 . - . exon_id "ENSMUSE00001211864"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P46636"; transcript_id "ENSMUST00000181559"; transcript_name "RPS6KB2-006"; transcript_source "havana"; tss_id "TSS23497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4159565 4159704 . - . exon_id "ENSMUSE00001199005"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P16631"; transcript_id "ENSMUST00000181844"; transcript_name "RPS6KB2-003"; transcript_source "havana"; tss_id "TSS39902"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4161067 4161214 . - . exon_id "ENSMUSE00001219533"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181753"; transcript_name "RPS6KB2-002"; transcript_source "havana"; tss_id "TSS36141"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4161067 4161214 . - . exon_id "ENSMUSE00001305637"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P16631"; transcript_id "ENSMUST00000181844"; transcript_name "RPS6KB2-003"; transcript_source "havana"; tss_id "TSS39902"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4161067 4161214 . - . exon_id "ENSMUSE00001219533"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181386"; transcript_name "RPS6KB2-008"; transcript_source "havana"; tss_id "TSS67006"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4161067 4161214 . - . exon_id "ENSMUSE00001305637"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P6000"; transcript_id "ENSMUST00000180903"; transcript_name "RPS6KB2-005"; transcript_source "havana"; tss_id "TSS23497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4161067 4161214 . - . exon_id "ENSMUSE00001305637"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P37230"; transcript_id "ENSMUST00000181415"; transcript_name "RPS6KB2-004"; transcript_source "havana"; tss_id "TSS39907"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4161067 4161214 . - . exon_id "ENSMUSE00001305637"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P40330"; transcript_id "ENSMUST00000181245"; transcript_name "RPS6KB2-001"; transcript_source "ensembl_havana"; tss_id "TSS58965"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4161067 4161214 . - . exon_id "ENSMUSE00001305637"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P46636"; transcript_id "ENSMUST00000181559"; transcript_name "RPS6KB2-006"; transcript_source "havana"; tss_id "TSS23497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4162259 4162327 . - . exon_id "ENSMUSE00001241663"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181753"; transcript_name "RPS6KB2-002"; transcript_source "havana"; tss_id "TSS36141"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4162259 4162327 . - . exon_id "ENSMUSE00001270685"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P16631"; transcript_id "ENSMUST00000181844"; transcript_name "RPS6KB2-003"; transcript_source "havana"; tss_id "TSS39902"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4162259 4162327 . - . exon_id "ENSMUSE00001241663"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181853"; transcript_name "RPS6KB2-010"; transcript_source "havana"; tss_id "TSS39902"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4162259 4162327 . - . exon_id "ENSMUSE00001270685"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P6000"; transcript_id "ENSMUST00000180903"; transcript_name "RPS6KB2-005"; transcript_source "havana"; tss_id "TSS23497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4162259 4162327 . - . exon_id "ENSMUSE00001270685"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P37230"; transcript_id "ENSMUST00000181415"; transcript_name "RPS6KB2-004"; transcript_source "havana"; tss_id "TSS39907"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4162259 4162327 . - . exon_id "ENSMUSE00001270685"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P40330"; transcript_id "ENSMUST00000181245"; transcript_name "RPS6KB2-001"; transcript_source "ensembl_havana"; tss_id "TSS58965"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4162259 4162327 . - . exon_id "ENSMUSE00001270685"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P46636"; transcript_id "ENSMUST00000181559"; transcript_name "RPS6KB2-006"; transcript_source "havana"; tss_id "TSS23497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4162259 4162329 . - . exon_id "ENSMUSE00001176276"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181386"; transcript_name "RPS6KB2-008"; transcript_source "havana"; tss_id "TSS67006"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4162516 4162722 . - . exon_id "ENSMUSE00001104498"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180873"; transcript_name "RPS6KB2-009"; transcript_source "havana"; tss_id "TSS19791"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4162602 4162717 . - . exon_id "ENSMUSE00001125192"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181853"; transcript_name "RPS6KB2-010"; transcript_source "havana"; tss_id "TSS39902"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4162602 4162722 . - . exon_id "ENSMUSE00001270904"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181753"; transcript_name "RPS6KB2-002"; transcript_source "havana"; tss_id "TSS36141"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4162602 4162722 . - . exon_id "ENSMUSE00001269092"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P16631"; transcript_id "ENSMUST00000181844"; transcript_name "RPS6KB2-003"; transcript_source "havana"; tss_id "TSS39902"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4162602 4162722 . - . exon_id "ENSMUSE00001269092"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P6000"; transcript_id "ENSMUST00000180903"; transcript_name "RPS6KB2-005"; transcript_source "havana"; tss_id "TSS23497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4162602 4162722 . - . exon_id "ENSMUSE00001269092"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P37230"; transcript_id "ENSMUST00000181415"; transcript_name "RPS6KB2-004"; transcript_source "havana"; tss_id "TSS39907"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4162602 4162722 . - . exon_id "ENSMUSE00001269092"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P40330"; transcript_id "ENSMUST00000181245"; transcript_name "RPS6KB2-001"; transcript_source "ensembl_havana"; tss_id "TSS58965"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4162602 4162722 . - . exon_id "ENSMUSE00001269092"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P46636"; transcript_id "ENSMUST00000181559"; transcript_name "RPS6KB2-006"; transcript_source "havana"; tss_id "TSS23497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4162814 4162861 . - . exon_id "ENSMUSE00001115182"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180827"; transcript_name "RPS6KB2-012"; transcript_source "havana"; tss_id "TSS58965"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4162821 4162861 . - . exon_id "ENSMUSE00001285535"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181753"; transcript_name "RPS6KB2-002"; transcript_source "havana"; tss_id "TSS36141"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4162821 4162861 . - . exon_id "ENSMUSE00001257391"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P16631"; transcript_id "ENSMUST00000181844"; transcript_name "RPS6KB2-003"; transcript_source "havana"; tss_id "TSS39902"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4162821 4162861 . - . exon_id "ENSMUSE00001257391"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P6000"; transcript_id "ENSMUST00000180903"; transcript_name "RPS6KB2-005"; transcript_source "havana"; tss_id "TSS23497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4162821 4162861 . - . exon_id "ENSMUSE00001257391"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P37230"; transcript_id "ENSMUST00000181415"; transcript_name "RPS6KB2-004"; transcript_source "havana"; tss_id "TSS39907"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4162821 4162861 . - . exon_id "ENSMUSE00001257391"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P40330"; transcript_id "ENSMUST00000181245"; transcript_name "RPS6KB2-001"; transcript_source "ensembl_havana"; tss_id "TSS58965"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4162821 4162861 . - . exon_id "ENSMUSE00001257391"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P46636"; transcript_id "ENSMUST00000181559"; transcript_name "RPS6KB2-006"; transcript_source "havana"; tss_id "TSS23497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4162821 4162861 . - . exon_id "ENSMUSE00001285535"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180873"; transcript_name "RPS6KB2-009"; transcript_source "havana"; tss_id "TSS19791"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4163167 4163284 . - . exon_id "ENSMUSE00001148812"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P6000"; transcript_id "ENSMUST00000180903"; transcript_name "RPS6KB2-005"; transcript_source "havana"; tss_id "TSS23497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4163167 4163284 . - . exon_id "ENSMUSE00001148812"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P46636"; transcript_id "ENSMUST00000181559"; transcript_name "RPS6KB2-006"; transcript_source "havana"; tss_id "TSS23497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4163167 4163295 . - . exon_id "ENSMUSE00001166172"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P37230"; transcript_id "ENSMUST00000181415"; transcript_name "RPS6KB2-004"; transcript_source "havana"; tss_id "TSS39907"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4163167 4163299 . - . exon_id "ENSMUSE00001228884"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P16631"; transcript_id "ENSMUST00000181844"; transcript_name "RPS6KB2-003"; transcript_source "havana"; tss_id "TSS39902"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4163167 4163299 . - . exon_id "ENSMUSE00001286165"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181853"; transcript_name "RPS6KB2-010"; transcript_source "havana"; tss_id "TSS39902"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4163167 4163315 . - . exon_id "ENSMUSE00001147336"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181753"; transcript_name "RPS6KB2-002"; transcript_source "havana"; tss_id "TSS36141"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4163167 4163329 . - . exon_id "ENSMUSE00001154466"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180873"; transcript_name "RPS6KB2-009"; transcript_source "havana"; tss_id "TSS19791"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4163167 4163353 . - . exon_id "ENSMUSE00001251488"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180827"; transcript_name "RPS6KB2-012"; transcript_source "havana"; tss_id "TSS58965"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4163167 4163353 . - . exon_id "ENSMUSE00001303603"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097721"; gene_name "RPS6KB2"; gene_source "ensembl_havana"; p_id "P40330"; transcript_id "ENSMUST00000181245"; transcript_name "RPS6KB2-001"; transcript_source "ensembl_havana"; tss_id "TSS58965"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4164323 4166563 . - . exon_id "ENSMUSE00001158765"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097064"; gene_name "CARNS1"; gene_source "ensembl"; p_id "P1376"; transcript_id "ENSMUST00000181869"; transcript_name "CARNS1-201"; transcript_source "ensembl"; tss_id "TSS56416"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4169527 4169807 . - . exon_id "ENSMUSE00001185339"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097064"; gene_name "CARNS1"; gene_source "ensembl"; p_id "P1376"; transcript_id "ENSMUST00000181869"; transcript_name "CARNS1-201"; transcript_source "ensembl"; tss_id "TSS56416"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH lincRNA exon 4169565 4171740 . + . exon_id "ENSMUSE00001139740"; exon_number "1"; gene_biotype "lincRNA"; gene_id "ENSMUSG00000097556"; gene_name "AC109138.2"; gene_source "ensembl"; transcript_id "ENSMUST00000181675"; transcript_name "AC109138.2-201"; transcript_source "ensembl"; tss_id "TSS31704"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4169898 4170129 . - . exon_id "ENSMUSE00001101107"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097064"; gene_name "CARNS1"; gene_source "ensembl"; p_id "P1376"; transcript_id "ENSMUST00000181869"; transcript_name "CARNS1-201"; transcript_source "ensembl"; tss_id "TSS56416"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4170825 4170910 . - . exon_id "ENSMUSE00001202401"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097064"; gene_name "CARNS1"; gene_source "ensembl"; p_id "P1376"; transcript_id "ENSMUST00000181869"; transcript_name "CARNS1-201"; transcript_source "ensembl"; tss_id "TSS56416"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4170995 4171169 . - . exon_id "ENSMUSE00001100335"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097064"; gene_name "CARNS1"; gene_source "ensembl"; p_id "P1376"; transcript_id "ENSMUST00000181869"; transcript_name "CARNS1-201"; transcript_source "ensembl"; tss_id "TSS56416"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4171411 4171898 . - . exon_id "ENSMUSE00001170671"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097064"; gene_name "CARNS1"; gene_source "ensembl"; p_id "P1376"; transcript_id "ENSMUST00000181869"; transcript_name "CARNS1-201"; transcript_source "ensembl"; tss_id "TSS56416"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4172145 4172234 . - . exon_id "ENSMUSE00001127296"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097064"; gene_name "CARNS1"; gene_source "ensembl"; p_id "P1376"; transcript_id "ENSMUST00000181869"; transcript_name "CARNS1-201"; transcript_source "ensembl"; tss_id "TSS56416"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH lincRNA exon 4172583 4174283 . + . exon_id "ENSMUSE00001182857"; exon_number "2"; gene_biotype "lincRNA"; gene_id "ENSMUSG00000097556"; gene_name "AC109138.2"; gene_source "ensembl"; transcript_id "ENSMUST00000181675"; transcript_name "AC109138.2-201"; transcript_source "ensembl"; tss_id "TSS31704"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4172958 4173219 . - . exon_id "ENSMUSE00001114210"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097064"; gene_name "CARNS1"; gene_source "ensembl"; p_id "P1376"; transcript_id "ENSMUST00000181869"; transcript_name "CARNS1-201"; transcript_source "ensembl"; tss_id "TSS56416"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4175004 4175030 . - . exon_id "ENSMUSE00001197936"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097064"; gene_name "CARNS1"; gene_source "ensembl"; p_id "P1376"; transcript_id "ENSMUST00000181869"; transcript_name "CARNS1-201"; transcript_source "ensembl"; tss_id "TSS56416"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4175393 4175478 . - . exon_id "ENSMUSE00001118175"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097064"; gene_name "CARNS1"; gene_source "ensembl"; p_id "P1376"; transcript_id "ENSMUST00000181869"; transcript_name "CARNS1-201"; transcript_source "ensembl"; tss_id "TSS56416"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4184357 4185072 . - . exon_id "ENSMUSE00001157641"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097708"; gene_name "TBC1D10C"; gene_source "ensembl"; p_id "P45599"; transcript_id "ENSMUST00000181228"; transcript_name "TBC1D10C-201"; transcript_source "ensembl"; tss_id "TSS40390"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4185351 4185505 . - . exon_id "ENSMUSE00001190353"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097708"; gene_name "TBC1D10C"; gene_source "ensembl"; p_id "P45599"; transcript_id "ENSMUST00000181228"; transcript_name "TBC1D10C-201"; transcript_source "ensembl"; tss_id "TSS40390"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4187941 4188130 . - . exon_id "ENSMUSE00001140442"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097708"; gene_name "TBC1D10C"; gene_source "ensembl"; p_id "P45599"; transcript_id "ENSMUST00000181228"; transcript_name "TBC1D10C-201"; transcript_source "ensembl"; tss_id "TSS40390"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4188245 4188310 . - . exon_id "ENSMUSE00001118514"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097708"; gene_name "TBC1D10C"; gene_source "ensembl"; p_id "P45599"; transcript_id "ENSMUST00000181228"; transcript_name "TBC1D10C-201"; transcript_source "ensembl"; tss_id "TSS40390"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4188943 4189057 . - . exon_id "ENSMUSE00001185356"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097708"; gene_name "TBC1D10C"; gene_source "ensembl"; p_id "P45599"; transcript_id "ENSMUST00000181228"; transcript_name "TBC1D10C-201"; transcript_source "ensembl"; tss_id "TSS40390"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4189212 4189318 . - . exon_id "ENSMUSE00001176992"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097708"; gene_name "TBC1D10C"; gene_source "ensembl"; p_id "P45599"; transcript_id "ENSMUST00000181228"; transcript_name "TBC1D10C-201"; transcript_source "ensembl"; tss_id "TSS40390"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4189405 4189512 . - . exon_id "ENSMUSE00001141576"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097708"; gene_name "TBC1D10C"; gene_source "ensembl"; p_id "P45599"; transcript_id "ENSMUST00000181228"; transcript_name "TBC1D10C-201"; transcript_source "ensembl"; tss_id "TSS40390"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4189863 4189962 . - . exon_id "ENSMUSE00001141001"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097708"; gene_name "TBC1D10C"; gene_source "ensembl"; p_id "P45599"; transcript_id "ENSMUST00000181228"; transcript_name "TBC1D10C-201"; transcript_source "ensembl"; tss_id "TSS40390"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4190663 4190834 . - . exon_id "ENSMUSE00001119122"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097708"; gene_name "TBC1D10C"; gene_source "ensembl"; p_id "P45599"; transcript_id "ENSMUST00000181228"; transcript_name "TBC1D10C-201"; transcript_source "ensembl"; tss_id "TSS40390"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4191018 4191046 . - . exon_id "ENSMUSE00001102869"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097708"; gene_name "TBC1D10C"; gene_source "ensembl"; p_id "P45599"; transcript_id "ENSMUST00000181228"; transcript_name "TBC1D10C-201"; transcript_source "ensembl"; tss_id "TSS40390"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4192157 4192270 . + . exon_id "ENSMUSE00001160867"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096994"; gene_name "PPP1CA"; gene_source "ensembl"; p_id "P37937"; transcript_id "ENSMUST00000180575"; transcript_name "PPP1CA-201"; transcript_source "ensembl"; tss_id "TSS20855"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4192744 4192875 . + . exon_id "ENSMUSE00001134807"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096994"; gene_name "PPP1CA"; gene_source "ensembl"; p_id "P37937"; transcript_id "ENSMUST00000180575"; transcript_name "PPP1CA-201"; transcript_source "ensembl"; tss_id "TSS20855"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4193021 4193251 . + . exon_id "ENSMUSE00001183994"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096994"; gene_name "PPP1CA"; gene_source "ensembl"; p_id "P37937"; transcript_id "ENSMUST00000180575"; transcript_name "PPP1CA-201"; transcript_source "ensembl"; tss_id "TSS20855"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4193766 4193870 . + . exon_id "ENSMUSE00001201024"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096994"; gene_name "PPP1CA"; gene_source "ensembl"; p_id "P37937"; transcript_id "ENSMUST00000180575"; transcript_name "PPP1CA-201"; transcript_source "ensembl"; tss_id "TSS20855"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4194466 4194689 . + . exon_id "ENSMUSE00001096025"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096994"; gene_name "PPP1CA"; gene_source "ensembl"; p_id "P37937"; transcript_id "ENSMUST00000180575"; transcript_name "PPP1CA-201"; transcript_source "ensembl"; tss_id "TSS20855"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4194771 4194905 . + . exon_id "ENSMUSE00001135657"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096994"; gene_name "PPP1CA"; gene_source "ensembl"; p_id "P37937"; transcript_id "ENSMUST00000180575"; transcript_name "PPP1CA-201"; transcript_source "ensembl"; tss_id "TSS20855"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4194981 4195418 . + . exon_id "ENSMUSE00001167806"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096994"; gene_name "PPP1CA"; gene_source "ensembl"; p_id "P37937"; transcript_id "ENSMUST00000180575"; transcript_name "PPP1CA-201"; transcript_source "ensembl"; tss_id "TSS20855"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4195197 4196081 . - . exon_id "ENSMUSE00001169118"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097909"; gene_name "RAD9A"; gene_source "ensembl"; p_id "P31950"; transcript_id "ENSMUST00000181329"; transcript_name "RAD9A-201"; transcript_source "ensembl"; tss_id "TSS24742"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4196180 4196381 . - . exon_id "ENSMUSE00001184613"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097909"; gene_name "RAD9A"; gene_source "ensembl"; p_id "P31950"; transcript_id "ENSMUST00000181329"; transcript_name "RAD9A-201"; transcript_source "ensembl"; tss_id "TSS24742"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4197112 4197249 . - . exon_id "ENSMUSE00001117502"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097909"; gene_name "RAD9A"; gene_source "ensembl"; p_id "P31950"; transcript_id "ENSMUST00000181329"; transcript_name "RAD9A-201"; transcript_source "ensembl"; tss_id "TSS24742"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4197338 4197402 . - . exon_id "ENSMUSE00001201528"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097909"; gene_name "RAD9A"; gene_source "ensembl"; p_id "P31950"; transcript_id "ENSMUST00000181329"; transcript_name "RAD9A-201"; transcript_source "ensembl"; tss_id "TSS24742"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4197476 4197585 . - . exon_id "ENSMUSE00001147608"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097909"; gene_name "RAD9A"; gene_source "ensembl"; p_id "P31950"; transcript_id "ENSMUST00000181329"; transcript_name "RAD9A-201"; transcript_source "ensembl"; tss_id "TSS24742"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4197670 4197779 . - . exon_id "ENSMUSE00001121579"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097909"; gene_name "RAD9A"; gene_source "ensembl"; p_id "P31950"; transcript_id "ENSMUST00000181329"; transcript_name "RAD9A-201"; transcript_source "ensembl"; tss_id "TSS24742"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4200271 4200370 . - . exon_id "ENSMUSE00001095642"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097909"; gene_name "RAD9A"; gene_source "ensembl"; p_id "P31950"; transcript_id "ENSMUST00000181329"; transcript_name "RAD9A-201"; transcript_source "ensembl"; tss_id "TSS24742"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4200464 4200578 . - . exon_id "ENSMUSE00001193091"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097909"; gene_name "RAD9A"; gene_source "ensembl"; p_id "P31950"; transcript_id "ENSMUST00000181329"; transcript_name "RAD9A-201"; transcript_source "ensembl"; tss_id "TSS24742"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4200928 4201056 . - . exon_id "ENSMUSE00001204500"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097909"; gene_name "RAD9A"; gene_source "ensembl"; p_id "P31950"; transcript_id "ENSMUST00000181329"; transcript_name "RAD9A-201"; transcript_source "ensembl"; tss_id "TSS24742"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4201328 4201398 . - . exon_id "ENSMUSE00001096383"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097909"; gene_name "RAD9A"; gene_source "ensembl"; p_id "P31950"; transcript_id "ENSMUST00000181329"; transcript_name "RAD9A-201"; transcript_source "ensembl"; tss_id "TSS24742"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4201482 4201602 . - . exon_id "ENSMUSE00001132442"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097909"; gene_name "RAD9A"; gene_source "ensembl"; p_id "P31950"; transcript_id "ENSMUST00000181329"; transcript_name "RAD9A-201"; transcript_source "ensembl"; tss_id "TSS24742"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4214237 4214499 . + . exon_id "ENSMUSE00001119775"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097629"; gene_name "CLCF1"; gene_source "ensembl_havana"; p_id "P32832"; transcript_id "ENSMUST00000180925"; transcript_name "CLCF1-001"; transcript_source "ensembl_havana"; tss_id "TSS83614"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4214263 4214499 . + . exon_id "ENSMUSE00001141202"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097629"; gene_name "CLCF1"; gene_source "ensembl_havana"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000180402"; transcript_name "CLCF1-003"; transcript_source "havana"; tss_id "TSS34726"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4214304 4214499 . + . exon_id "ENSMUSE00001124119"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097629"; gene_name "CLCF1"; gene_source "ensembl_havana"; p_id "P26276"; transcript_id "ENSMUST00000181917"; transcript_name "CLCF1-002"; transcript_source "havana"; tss_id "TSS57422"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4214593 4214631 . + . exon_id "ENSMUSE00001147455"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097629"; gene_name "CLCF1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180776"; transcript_name "CLCF1-004"; transcript_source "havana"; tss_id "TSS15437"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH miRNA exon 4215401 4215487 . - . exon_id "ENSMUSE00001148598"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000097512"; gene_name "AC109138.1"; gene_source "ensembl"; transcript_id "ENSMUST00000181946"; transcript_name "AC109138.1-201"; transcript_source "ensembl"; tss_id "TSS39549"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4215732 4215829 . + . exon_id "ENSMUSE00001182999"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097629"; gene_name "CLCF1"; gene_source "ensembl_havana"; p_id "P26276"; transcript_id "ENSMUST00000181917"; transcript_name "CLCF1-002"; transcript_source "havana"; tss_id "TSS57422"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4220177 4220343 . + . exon_id "ENSMUSE00001238586"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097629"; gene_name "CLCF1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180776"; transcript_name "CLCF1-004"; transcript_source "havana"; tss_id "TSS15437"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4220177 4220343 . + . exon_id "ENSMUSE00001284902"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097629"; gene_name "CLCF1"; gene_source "ensembl_havana"; p_id "P26276"; transcript_id "ENSMUST00000181917"; transcript_name "CLCF1-002"; transcript_source "havana"; tss_id "TSS57422"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4220177 4220343 . + . exon_id "ENSMUSE00001280455"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097629"; gene_name "CLCF1"; gene_source "ensembl_havana"; p_id "P32832"; transcript_id "ENSMUST00000180925"; transcript_name "CLCF1-001"; transcript_source "ensembl_havana"; tss_id "TSS83614"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH retained_intron exon 4220177 4223489 . + . exon_id "ENSMUSE00001097668"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097629"; gene_name "CLCF1"; gene_source "ensembl_havana"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000180402"; transcript_name "CLCF1-003"; transcript_source "havana"; tss_id "TSS34726"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH processed_transcript exon 4222073 4222512 . + . exon_id "ENSMUSE00001164901"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097629"; gene_name "CLCF1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180776"; transcript_name "CLCF1-004"; transcript_source "havana"; tss_id "TSS15437"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH nonsense_mediated_decay exon 4222073 4223489 . + . exon_id "ENSMUSE00001256044"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097629"; gene_name "CLCF1"; gene_source "ensembl_havana"; p_id "P26276"; transcript_id "ENSMUST00000181917"; transcript_name "CLCF1-002"; transcript_source "havana"; tss_id "TSS57422"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4222073 4223489 . + . exon_id "ENSMUSE00001225011"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097629"; gene_name "CLCF1"; gene_source "ensembl_havana"; p_id "P32832"; transcript_id "ENSMUST00000180925"; transcript_name "CLCF1-001"; transcript_source "ensembl_havana"; tss_id "TSS83614"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4231898 4232187 . + . exon_id "ENSMUSE00001150300"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097508"; gene_name "POLD4"; gene_source "ensembl"; p_id "P27965"; transcript_id "ENSMUST00000180621"; transcript_name "POLD4-201"; transcript_source "ensembl"; tss_id "TSS66310"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4232462 4232551 . + . exon_id "ENSMUSE00001179635"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097508"; gene_name "POLD4"; gene_source "ensembl"; p_id "P27965"; transcript_id "ENSMUST00000180621"; transcript_name "POLD4-201"; transcript_source "ensembl"; tss_id "TSS66310"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4232747 4232858 . + . exon_id "ENSMUSE00001099105"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097508"; gene_name "POLD4"; gene_source "ensembl"; p_id "P27965"; transcript_id "ENSMUST00000180621"; transcript_name "POLD4-201"; transcript_source "ensembl"; tss_id "TSS66310"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG153_PATCH' not found in Genome fasta files for line: MG153_PATCH protein_coding exon 4233213 4233630 . + . exon_id "ENSMUSE00001172361"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097508"; gene_name "POLD4"; gene_source "ensembl"; p_id "P27965"; transcript_id "ENSMUST00000180621"; transcript_name "POLD4-201"; transcript_source "ensembl"; tss_id "TSS66310"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3829_PATCH' not found in Genome fasta files for line: MG3829_PATCH protein_coding exon 88047381 88048032 . + . exon_id "ENSMUSE00001316060"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098301"; gene_name "SRSF1"; gene_source "ensembl"; p_id "P2824"; transcript_id "ENSMUST00000183352"; transcript_name "SRSF1-201"; transcript_source "ensembl"; tss_id "TSS53825"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3829_PATCH' not found in Genome fasta files for line: MG3829_PATCH protein_coding exon 88048490 88048674 . + . exon_id "ENSMUSE00001316587"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098301"; gene_name "SRSF1"; gene_source "ensembl"; p_id "P2824"; transcript_id "ENSMUST00000183352"; transcript_name "SRSF1-201"; transcript_source "ensembl"; tss_id "TSS53825"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3829_PATCH' not found in Genome fasta files for line: MG3829_PATCH protein_coding exon 88049043 88049215 . + . exon_id "ENSMUSE00001317059"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098301"; gene_name "SRSF1"; gene_source "ensembl"; p_id "P2824"; transcript_id "ENSMUST00000183352"; transcript_name "SRSF1-201"; transcript_source "ensembl"; tss_id "TSS53825"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3829_PATCH' not found in Genome fasta files for line: MG3829_PATCH protein_coding exon 88049412 88053757 . + . exon_id "ENSMUSE00001313848"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098301"; gene_name "SRSF1"; gene_source "ensembl"; p_id "P2824"; transcript_id "ENSMUST00000183352"; transcript_name "SRSF1-201"; transcript_source "ensembl"; tss_id "TSS53825"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3829_PATCH' not found in Genome fasta files for line: MG3829_PATCH protein_coding exon 88068279 88068433 . + . exon_id "ENSMUSE00001314978"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098546"; gene_name "AL593853.1"; gene_source "ensembl"; p_id "P34479"; transcript_id "ENSMUST00000183959"; transcript_name "AL593853.1-201"; transcript_source "ensembl"; tss_id "TSS32628"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3829_PATCH' not found in Genome fasta files for line: MG3829_PATCH protein_coding exon 88073057 88073751 . + . exon_id "ENSMUSE00001315642"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098546"; gene_name "AL593853.1"; gene_source "ensembl"; p_id "P34479"; transcript_id "ENSMUST00000183959"; transcript_name "AL593853.1-201"; transcript_source "ensembl"; tss_id "TSS32628"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3829_PATCH' not found in Genome fasta files for line: MG3829_PATCH protein_coding exon 88074662 88074725 . + . exon_id "ENSMUSE00001313736"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098546"; gene_name "AL593853.1"; gene_source "ensembl"; p_id "P34479"; transcript_id "ENSMUST00000183959"; transcript_name "AL593853.1-201"; transcript_source "ensembl"; tss_id "TSS32628"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3829_PATCH' not found in Genome fasta files for line: MG3829_PATCH protein_coding exon 88076191 88076374 . + . exon_id "ENSMUSE00001314228"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098546"; gene_name "AL593853.1"; gene_source "ensembl"; p_id "P34479"; transcript_id "ENSMUST00000183959"; transcript_name "AL593853.1-201"; transcript_source "ensembl"; tss_id "TSS32628"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3829_PATCH' not found in Genome fasta files for line: MG3829_PATCH protein_coding exon 88078403 88078555 . + . exon_id "ENSMUSE00001314649"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098546"; gene_name "AL593853.1"; gene_source "ensembl"; p_id "P34479"; transcript_id "ENSMUST00000183959"; transcript_name "AL593853.1-201"; transcript_source "ensembl"; tss_id "TSS32628"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3829_PATCH' not found in Genome fasta files for line: MG3829_PATCH protein_coding exon 88081398 88084728 . + . exon_id "ENSMUSE00001313764"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098546"; gene_name "AL593853.1"; gene_source "ensembl"; p_id "P34479"; transcript_id "ENSMUST00000183959"; transcript_name "AL593853.1-201"; transcript_source "ensembl"; tss_id "TSS32628"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3829_PATCH' not found in Genome fasta files for line: MG3829_PATCH protein_coding exon 88099146 88099343 . + . exon_id "ENSMUSE00001313741"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098571"; gene_name "AL593853.2"; gene_source "ensembl"; p_id "P17515"; transcript_id "ENSMUST00000184231"; transcript_name "AL593853.2-201"; transcript_source "ensembl"; tss_id "TSS19181"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3829_PATCH' not found in Genome fasta files for line: MG3829_PATCH protein_coding exon 88169565 88170174 . + . exon_id "ENSMUSE00001315468"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098571"; gene_name "AL593853.2"; gene_source "ensembl"; p_id "P17515"; transcript_id "ENSMUST00000184231"; transcript_name "AL593853.2-201"; transcript_source "ensembl"; tss_id "TSS19181"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3829_PATCH' not found in Genome fasta files for line: MG3829_PATCH protein_coding exon 88177270 88177397 . + . exon_id "ENSMUSE00001313660"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098571"; gene_name "AL593853.2"; gene_source "ensembl"; p_id "P17515"; transcript_id "ENSMUST00000184231"; transcript_name "AL593853.2-201"; transcript_source "ensembl"; tss_id "TSS19181"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3829_PATCH' not found in Genome fasta files for line: MG3829_PATCH protein_coding exon 88182481 88182607 . + . exon_id "ENSMUSE00001316347"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098571"; gene_name "AL593853.2"; gene_source "ensembl"; p_id "P17515"; transcript_id "ENSMUST00000184231"; transcript_name "AL593853.2-201"; transcript_source "ensembl"; tss_id "TSS19181"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3829_PATCH' not found in Genome fasta files for line: MG3829_PATCH protein_coding exon 88183239 88183431 . + . exon_id "ENSMUSE00001315442"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098571"; gene_name "AL593853.2"; gene_source "ensembl"; p_id "P17515"; transcript_id "ENSMUST00000184231"; transcript_name "AL593853.2-201"; transcript_source "ensembl"; tss_id "TSS19181"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3829_PATCH' not found in Genome fasta files for line: MG3829_PATCH protein_coding exon 88184634 88184717 . + . exon_id "ENSMUSE00001315112"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098571"; gene_name "AL593853.2"; gene_source "ensembl"; p_id "P17515"; transcript_id "ENSMUST00000184231"; transcript_name "AL593853.2-201"; transcript_source "ensembl"; tss_id "TSS19181"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3829_PATCH' not found in Genome fasta files for line: MG3829_PATCH protein_coding exon 88187061 88187132 . + . exon_id "ENSMUSE00001316199"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098571"; gene_name "AL593853.2"; gene_source "ensembl"; p_id "P17515"; transcript_id "ENSMUST00000184231"; transcript_name "AL593853.2-201"; transcript_source "ensembl"; tss_id "TSS19181"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3829_PATCH' not found in Genome fasta files for line: MG3829_PATCH protein_coding exon 88187994 88188087 . + . exon_id "ENSMUSE00001317754"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098571"; gene_name "AL593853.2"; gene_source "ensembl"; p_id "P17515"; transcript_id "ENSMUST00000184231"; transcript_name "AL593853.2-201"; transcript_source "ensembl"; tss_id "TSS19181"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3829_PATCH' not found in Genome fasta files for line: MG3829_PATCH protein_coding exon 88188783 88188850 . + . exon_id "ENSMUSE00001314721"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098571"; gene_name "AL593853.2"; gene_source "ensembl"; p_id "P17515"; transcript_id "ENSMUST00000184231"; transcript_name "AL593853.2-201"; transcript_source "ensembl"; tss_id "TSS19181"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3829_PATCH' not found in Genome fasta files for line: MG3829_PATCH protein_coding exon 88190055 88190125 . + . exon_id "ENSMUSE00001316831"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098571"; gene_name "AL593853.2"; gene_source "ensembl"; p_id "P17515"; transcript_id "ENSMUST00000184231"; transcript_name "AL593853.2-201"; transcript_source "ensembl"; tss_id "TSS19181"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3829_PATCH' not found in Genome fasta files for line: MG3829_PATCH protein_coding exon 88192597 88194139 . + . exon_id "ENSMUSE00001317580"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098571"; gene_name "AL593853.2"; gene_source "ensembl"; p_id "P17515"; transcript_id "ENSMUST00000184231"; transcript_name "AL593853.2-201"; transcript_source "ensembl"; tss_id "TSS19181"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3829_PATCH' not found in Genome fasta files for line: MG3829_PATCH protein_coding exon 88204418 88204485 . + . exon_id "ENSMUSE00001316756"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098375"; gene_name "MRPS23"; gene_source "ensembl"; p_id "P31440"; transcript_id "ENSMUST00000183742"; transcript_name "MRPS23-201"; transcript_source "ensembl"; tss_id "TSS29420"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3829_PATCH' not found in Genome fasta files for line: MG3829_PATCH protein_coding exon 88205189 88205359 . + . exon_id "ENSMUSE00001317801"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098375"; gene_name "MRPS23"; gene_source "ensembl"; p_id "P31440"; transcript_id "ENSMUST00000183742"; transcript_name "MRPS23-201"; transcript_source "ensembl"; tss_id "TSS29420"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3829_PATCH' not found in Genome fasta files for line: MG3829_PATCH protein_coding exon 88209853 88209930 . + . exon_id "ENSMUSE00001313854"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098375"; gene_name "MRPS23"; gene_source "ensembl"; p_id "P31440"; transcript_id "ENSMUST00000183742"; transcript_name "MRPS23-201"; transcript_source "ensembl"; tss_id "TSS29420"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3829_PATCH' not found in Genome fasta files for line: MG3829_PATCH protein_coding exon 88210104 88210230 . + . exon_id "ENSMUSE00001315147"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098375"; gene_name "MRPS23"; gene_source "ensembl"; p_id "P31440"; transcript_id "ENSMUST00000183742"; transcript_name "MRPS23-201"; transcript_source "ensembl"; tss_id "TSS29420"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3829_PATCH' not found in Genome fasta files for line: MG3829_PATCH protein_coding exon 88210650 88211507 . + . exon_id "ENSMUSE00001317574"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098375"; gene_name "MRPS23"; gene_source "ensembl"; p_id "P31440"; transcript_id "ENSMUST00000183742"; transcript_name "MRPS23-201"; transcript_source "ensembl"; tss_id "TSS29420"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3829_PATCH' not found in Genome fasta files for line: MG3829_PATCH protein_coding exon 88294043 88295261 . + . exon_id "ENSMUSE00001316089"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098681"; gene_name "RP24-402O2.1"; gene_source "ensembl_havana"; p_id "P35100"; transcript_id "ENSMUST00000183390"; transcript_name "RP24-402O2.1-001"; transcript_source "ensembl_havana"; tss_id "TSS22338"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18220754 18223377 . - . exon_id "ENSMUSE00001317334"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099262"; gene_name "ZDHHC8"; gene_source "ensembl"; p_id "P6468"; transcript_id "ENSMUST00000184988"; transcript_name "ZDHHC8-201"; transcript_source "ensembl"; tss_id "TSS35769"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18224218 18225215 . - . exon_id "ENSMUSE00001313635"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099262"; gene_name "ZDHHC8"; gene_source "ensembl"; p_id "P6468"; transcript_id "ENSMUST00000184988"; transcript_name "ZDHHC8-201"; transcript_source "ensembl"; tss_id "TSS35769"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18226459 18226568 . - . exon_id "ENSMUSE00001314689"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099262"; gene_name "ZDHHC8"; gene_source "ensembl"; p_id "P6468"; transcript_id "ENSMUST00000184988"; transcript_name "ZDHHC8-201"; transcript_source "ensembl"; tss_id "TSS35769"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18226646 18226766 . - . exon_id "ENSMUSE00001316996"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099262"; gene_name "ZDHHC8"; gene_source "ensembl"; p_id "P6468"; transcript_id "ENSMUST00000184988"; transcript_name "ZDHHC8-201"; transcript_source "ensembl"; tss_id "TSS35769"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18227053 18227188 . - . exon_id "ENSMUSE00001317120"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099262"; gene_name "ZDHHC8"; gene_source "ensembl"; p_id "P6468"; transcript_id "ENSMUST00000184988"; transcript_name "ZDHHC8-201"; transcript_source "ensembl"; tss_id "TSS35769"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18227355 18227446 . - . exon_id "ENSMUSE00001315464"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099262"; gene_name "ZDHHC8"; gene_source "ensembl"; p_id "P6468"; transcript_id "ENSMUST00000184988"; transcript_name "ZDHHC8-201"; transcript_source "ensembl"; tss_id "TSS35769"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18227776 18227878 . - . exon_id "ENSMUSE00001316932"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099262"; gene_name "ZDHHC8"; gene_source "ensembl"; p_id "P6468"; transcript_id "ENSMUST00000184988"; transcript_name "ZDHHC8-201"; transcript_source "ensembl"; tss_id "TSS35769"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18228059 18228231 . - . exon_id "ENSMUSE00001317855"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099262"; gene_name "ZDHHC8"; gene_source "ensembl"; p_id "P6468"; transcript_id "ENSMUST00000184988"; transcript_name "ZDHHC8-201"; transcript_source "ensembl"; tss_id "TSS35769"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18228314 18228471 . - . exon_id "ENSMUSE00001316869"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099262"; gene_name "ZDHHC8"; gene_source "ensembl"; p_id "P6468"; transcript_id "ENSMUST00000184988"; transcript_name "ZDHHC8-201"; transcript_source "ensembl"; tss_id "TSS35769"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18228635 18228756 . - . exon_id "ENSMUSE00001315235"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099262"; gene_name "ZDHHC8"; gene_source "ensembl"; p_id "P6468"; transcript_id "ENSMUST00000184988"; transcript_name "ZDHHC8-201"; transcript_source "ensembl"; tss_id "TSS35769"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18234907 18235136 . - . exon_id "ENSMUSE00001313636"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099262"; gene_name "ZDHHC8"; gene_source "ensembl"; p_id "P6468"; transcript_id "ENSMUST00000184988"; transcript_name "ZDHHC8-201"; transcript_source "ensembl"; tss_id "TSS35769"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18239784 18240193 . - . exon_id "ENSMUSE00001317631"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099164"; gene_name "RANBP1"; gene_source "ensembl_havana"; p_id "P17833"; transcript_id "ENSMUST00000183528"; transcript_name "RANBP1-001"; transcript_source "ensembl_havana"; tss_id "TSS23357"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18239802 18240193 . - . exon_id "ENSMUSE00001317354"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099164"; gene_name "RANBP1"; gene_source "ensembl_havana"; p_id "P35316"; transcript_id "ENSMUST00000185058"; transcript_name "RANBP1-003"; transcript_source "havana"; tss_id "TSS14062"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH snoRNA exon 18240717 18240842 . - . exon_id "ENSMUSE00001314889"; exon_number "1"; gene_biotype "snoRNA"; gene_id "ENSMUSG00000099277"; gene_name "SNORA77"; gene_source "ensembl"; transcript_id "ENSMUST00000183789"; transcript_name "SNORA77.1-201"; transcript_source "ensembl"; tss_id "TSS49288"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18240894 18240959 . - . exon_id "ENSMUSE00001317152"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099164"; gene_name "RANBP1"; gene_source "ensembl_havana"; p_id "P35316"; transcript_id "ENSMUST00000185058"; transcript_name "RANBP1-003"; transcript_source "havana"; tss_id "TSS14062"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18240894 18240959 . - . exon_id "ENSMUSE00001317152"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099164"; gene_name "RANBP1"; gene_source "ensembl_havana"; p_id "P17833"; transcript_id "ENSMUST00000183528"; transcript_name "RANBP1-001"; transcript_source "ensembl_havana"; tss_id "TSS23357"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18241745 18241873 . - . exon_id "ENSMUSE00001315183"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099164"; gene_name "RANBP1"; gene_source "ensembl_havana"; p_id "P35316"; transcript_id "ENSMUST00000185058"; transcript_name "RANBP1-003"; transcript_source "havana"; tss_id "TSS14062"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18241745 18241873 . - . exon_id "ENSMUSE00001315183"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099164"; gene_name "RANBP1"; gene_source "ensembl_havana"; p_id "P17833"; transcript_id "ENSMUST00000183528"; transcript_name "RANBP1-001"; transcript_source "ensembl_havana"; tss_id "TSS23357"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18244969 18245358 . - . exon_id "ENSMUSE00001314910"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099164"; gene_name "RANBP1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184634"; transcript_name "RANBP1-004"; transcript_source "havana"; tss_id "TSS26111"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18245201 18245358 . - . exon_id "ENSMUSE00001314016"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099164"; gene_name "RANBP1"; gene_source "ensembl_havana"; p_id "P35316"; transcript_id "ENSMUST00000185058"; transcript_name "RANBP1-003"; transcript_source "havana"; tss_id "TSS14062"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18245201 18245358 . - . exon_id "ENSMUSE00001314016"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099164"; gene_name "RANBP1"; gene_source "ensembl_havana"; p_id "P17833"; transcript_id "ENSMUST00000183528"; transcript_name "RANBP1-001"; transcript_source "ensembl_havana"; tss_id "TSS23357"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH processed_transcript exon 18245205 18245358 . - . exon_id "ENSMUSE00001313695"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099164"; gene_name "RANBP1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000185140"; transcript_name "RANBP1-002"; transcript_source "havana"; tss_id "TSS76589"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18247289 18247425 . - . exon_id "ENSMUSE00001315868"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099164"; gene_name "RANBP1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184634"; transcript_name "RANBP1-004"; transcript_source "havana"; tss_id "TSS26111"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18247289 18247425 . - . exon_id "ENSMUSE00001315700"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099164"; gene_name "RANBP1"; gene_source "ensembl_havana"; p_id "P35316"; transcript_id "ENSMUST00000185058"; transcript_name "RANBP1-003"; transcript_source "havana"; tss_id "TSS14062"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH processed_transcript exon 18247289 18247425 . - . exon_id "ENSMUSE00001315868"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099164"; gene_name "RANBP1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000185140"; transcript_name "RANBP1-002"; transcript_source "havana"; tss_id "TSS76589"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18247289 18247425 . - . exon_id "ENSMUSE00001317536"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099164"; gene_name "RANBP1"; gene_source "ensembl_havana"; p_id "P17833"; transcript_id "ENSMUST00000183528"; transcript_name "RANBP1-001"; transcript_source "ensembl_havana"; tss_id "TSS23357"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18248027 18248067 . - . exon_id "ENSMUSE00001317778"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099164"; gene_name "RANBP1"; gene_source "ensembl_havana"; p_id "P35316"; transcript_id "ENSMUST00000185058"; transcript_name "RANBP1-003"; transcript_source "havana"; tss_id "TSS14062"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH processed_transcript exon 18248127 18248434 . - . exon_id "ENSMUSE00001314932"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099164"; gene_name "RANBP1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000185140"; transcript_name "RANBP1-002"; transcript_source "havana"; tss_id "TSS76589"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18248548 18248646 . - . exon_id "ENSMUSE00001313680"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099164"; gene_name "RANBP1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184634"; transcript_name "RANBP1-004"; transcript_source "havana"; tss_id "TSS26111"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18248548 18248732 . - . exon_id "ENSMUSE00001316919"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099164"; gene_name "RANBP1"; gene_source "ensembl_havana"; p_id "P17833"; transcript_id "ENSMUST00000183528"; transcript_name "RANBP1-001"; transcript_source "ensembl_havana"; tss_id "TSS23357"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18248679 18250033 . + . exon_id "ENSMUSE00001314340"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000183889"; transcript_name "TRMT2A-003"; transcript_source "havana"; tss_id "TSS27911"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18248883 18249251 . + . exon_id "ENSMUSE00001314290"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P13135"; transcript_id "ENSMUST00000183589"; transcript_name "TRMT2A-001"; transcript_source "havana"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18248883 18249251 . + . exon_id "ENSMUSE00001314384"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P16731"; transcript_id "ENSMUST00000183774"; transcript_name "TRMT2A-201"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18248883 18249251 . + . exon_id "ENSMUSE00001314290"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P39281"; transcript_id "ENSMUST00000183969"; transcript_name "TRMT2A-002"; transcript_source "ensembl_havana"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18248883 18249251 . + . exon_id "ENSMUSE00001314384"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P39281"; transcript_id "ENSMUST00000183921"; transcript_name "TRMT2A-203"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18248883 18249251 . + . exon_id "ENSMUSE00001314384"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P13135"; transcript_id "ENSMUST00000185142"; transcript_name "TRMT2A-204"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18249002 18249251 . + . exon_id "ENSMUSE00001315973"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184144"; transcript_name "TRMT2A-006"; transcript_source "havana"; tss_id "TSS29707"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18249009 18249251 . + . exon_id "ENSMUSE00001317552"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184076"; transcript_name "TRMT2A-005"; transcript_source "havana"; tss_id "TSS29713"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18249009 18249251 . + . exon_id "ENSMUSE00001317552"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184496"; transcript_name "TRMT2A-004"; transcript_source "havana"; tss_id "TSS29713"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18249062 18249298 . + . exon_id "ENSMUSE00001316053"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P21137"; transcript_id "ENSMUST00000184895"; transcript_name "TRMT2A-010"; transcript_source "ensembl_havana"; tss_id "TSS19906"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18249278 18249298 . + . exon_id "ENSMUSE00001316257"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P21137"; transcript_id "ENSMUST00000183848"; transcript_name "TRMT2A-202"; transcript_source "ensembl"; tss_id "TSS80814"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18249486 18250033 . + . exon_id "ENSMUSE00001315160"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P13135"; transcript_id "ENSMUST00000183589"; transcript_name "TRMT2A-001"; transcript_source "havana"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18249486 18250033 . + . exon_id "ENSMUSE00001315387"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P21137"; transcript_id "ENSMUST00000183848"; transcript_name "TRMT2A-202"; transcript_source "ensembl"; tss_id "TSS80814"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18249486 18250033 . + . exon_id "ENSMUSE00001315387"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P16731"; transcript_id "ENSMUST00000183774"; transcript_name "TRMT2A-201"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18249486 18250033 . + . exon_id "ENSMUSE00001315160"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P21137"; transcript_id "ENSMUST00000184895"; transcript_name "TRMT2A-010"; transcript_source "ensembl_havana"; tss_id "TSS19906"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18249486 18250033 . + . exon_id "ENSMUSE00001315160"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P39281"; transcript_id "ENSMUST00000183969"; transcript_name "TRMT2A-002"; transcript_source "ensembl_havana"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18249486 18250033 . + . exon_id "ENSMUSE00001317718"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184076"; transcript_name "TRMT2A-005"; transcript_source "havana"; tss_id "TSS29713"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18249486 18250033 . + . exon_id "ENSMUSE00001317718"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184496"; transcript_name "TRMT2A-004"; transcript_source "havana"; tss_id "TSS29713"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18249486 18250033 . + . exon_id "ENSMUSE00001317718"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184144"; transcript_name "TRMT2A-006"; transcript_source "havana"; tss_id "TSS29707"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18249486 18250033 . + . exon_id "ENSMUSE00001315387"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P39281"; transcript_id "ENSMUST00000183921"; transcript_name "TRMT2A-203"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18249486 18250033 . + . exon_id "ENSMUSE00001315387"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P13135"; transcript_id "ENSMUST00000185142"; transcript_name "TRMT2A-204"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18250021 18250033 . + . exon_id "ENSMUSE00001314731"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P33498"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000185170"; transcript_name "TRMT2A-008"; transcript_source "havana"; tss_id "TSS81579"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18250454 18250562 . + . exon_id "ENSMUSE00001313703"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000183889"; transcript_name "TRMT2A-003"; transcript_source "havana"; tss_id "TSS27911"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18250454 18250562 . + . exon_id "ENSMUSE00001317424"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P13135"; transcript_id "ENSMUST00000183589"; transcript_name "TRMT2A-001"; transcript_source "havana"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18250454 18250562 . + . exon_id "ENSMUSE00001317804"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P21137"; transcript_id "ENSMUST00000183848"; transcript_name "TRMT2A-202"; transcript_source "ensembl"; tss_id "TSS80814"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18250454 18250562 . + . exon_id "ENSMUSE00001317804"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P16731"; transcript_id "ENSMUST00000183774"; transcript_name "TRMT2A-201"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18250454 18250562 . + . exon_id "ENSMUSE00001317424"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P21137"; transcript_id "ENSMUST00000184895"; transcript_name "TRMT2A-010"; transcript_source "ensembl_havana"; tss_id "TSS19906"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18250454 18250562 . + . exon_id "ENSMUSE00001317424"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P33498"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000185170"; transcript_name "TRMT2A-008"; transcript_source "havana"; tss_id "TSS81579"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18250454 18250562 . + . exon_id "ENSMUSE00001317424"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P39281"; transcript_id "ENSMUST00000183969"; transcript_name "TRMT2A-002"; transcript_source "ensembl_havana"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18250454 18250562 . + . exon_id "ENSMUSE00001313703"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184076"; transcript_name "TRMT2A-005"; transcript_source "havana"; tss_id "TSS29713"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18250454 18250562 . + . exon_id "ENSMUSE00001313703"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184496"; transcript_name "TRMT2A-004"; transcript_source "havana"; tss_id "TSS29713"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18250454 18250562 . + . exon_id "ENSMUSE00001313703"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184144"; transcript_name "TRMT2A-006"; transcript_source "havana"; tss_id "TSS29707"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18250454 18250562 . + . exon_id "ENSMUSE00001317804"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P39281"; transcript_id "ENSMUST00000183921"; transcript_name "TRMT2A-203"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18250454 18250562 . + . exon_id "ENSMUSE00001317804"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P13135"; transcript_id "ENSMUST00000185142"; transcript_name "TRMT2A-204"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18250820 18251001 . + . exon_id "ENSMUSE00001315141"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000183889"; transcript_name "TRMT2A-003"; transcript_source "havana"; tss_id "TSS27911"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18250820 18251001 . + . exon_id "ENSMUSE00001313877"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P13135"; transcript_id "ENSMUST00000183589"; transcript_name "TRMT2A-001"; transcript_source "havana"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18250820 18251001 . + . exon_id "ENSMUSE00001313946"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P21137"; transcript_id "ENSMUST00000183848"; transcript_name "TRMT2A-202"; transcript_source "ensembl"; tss_id "TSS80814"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18250820 18251001 . + . exon_id "ENSMUSE00001313946"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P16731"; transcript_id "ENSMUST00000183774"; transcript_name "TRMT2A-201"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18250820 18251001 . + . exon_id "ENSMUSE00001313877"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P21137"; transcript_id "ENSMUST00000184895"; transcript_name "TRMT2A-010"; transcript_source "ensembl_havana"; tss_id "TSS19906"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18250820 18251001 . + . exon_id "ENSMUSE00001313877"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P33498"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000185170"; transcript_name "TRMT2A-008"; transcript_source "havana"; tss_id "TSS81579"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18250820 18251001 . + . exon_id "ENSMUSE00001313877"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P39281"; transcript_id "ENSMUST00000183969"; transcript_name "TRMT2A-002"; transcript_source "ensembl_havana"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18250820 18251001 . + . exon_id "ENSMUSE00001315141"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184144"; transcript_name "TRMT2A-006"; transcript_source "havana"; tss_id "TSS29707"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18250820 18251001 . + . exon_id "ENSMUSE00001313946"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P39281"; transcript_id "ENSMUST00000183921"; transcript_name "TRMT2A-203"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18250820 18251001 . + . exon_id "ENSMUSE00001313946"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P13135"; transcript_id "ENSMUST00000185142"; transcript_name "TRMT2A-204"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18250820 18251660 . + . exon_id "ENSMUSE00001316085"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184076"; transcript_name "TRMT2A-005"; transcript_source "havana"; tss_id "TSS29713"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18250820 18251660 . + . exon_id "ENSMUSE00001316085"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184496"; transcript_name "TRMT2A-004"; transcript_source "havana"; tss_id "TSS29713"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18251156 18251270 . + . exon_id "ENSMUSE00001315794"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000183889"; transcript_name "TRMT2A-003"; transcript_source "havana"; tss_id "TSS27911"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18251156 18251270 . + . exon_id "ENSMUSE00001315620"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P13135"; transcript_id "ENSMUST00000183589"; transcript_name "TRMT2A-001"; transcript_source "havana"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18251156 18251270 . + . exon_id "ENSMUSE00001317943"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P21137"; transcript_id "ENSMUST00000183848"; transcript_name "TRMT2A-202"; transcript_source "ensembl"; tss_id "TSS80814"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18251156 18251270 . + . exon_id "ENSMUSE00001317943"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P16731"; transcript_id "ENSMUST00000183774"; transcript_name "TRMT2A-201"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18251156 18251270 . + . exon_id "ENSMUSE00001315620"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P21137"; transcript_id "ENSMUST00000184895"; transcript_name "TRMT2A-010"; transcript_source "ensembl_havana"; tss_id "TSS19906"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18251156 18251270 . + . exon_id "ENSMUSE00001315620"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P39281"; transcript_id "ENSMUST00000183969"; transcript_name "TRMT2A-002"; transcript_source "ensembl_havana"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18251156 18251270 . + . exon_id "ENSMUSE00001315794"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184144"; transcript_name "TRMT2A-006"; transcript_source "havana"; tss_id "TSS29707"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18251156 18251270 . + . exon_id "ENSMUSE00001317943"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P39281"; transcript_id "ENSMUST00000183921"; transcript_name "TRMT2A-203"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18251156 18251270 . + . exon_id "ENSMUSE00001317943"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P13135"; transcript_id "ENSMUST00000185142"; transcript_name "TRMT2A-204"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18251359 18251474 . + . exon_id "ENSMUSE00001317807"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000183889"; transcript_name "TRMT2A-003"; transcript_source "havana"; tss_id "TSS27911"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18251359 18251474 . + . exon_id "ENSMUSE00001317497"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P13135"; transcript_id "ENSMUST00000183589"; transcript_name "TRMT2A-001"; transcript_source "havana"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18251359 18251474 . + . exon_id "ENSMUSE00001313957"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P21137"; transcript_id "ENSMUST00000183848"; transcript_name "TRMT2A-202"; transcript_source "ensembl"; tss_id "TSS80814"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18251359 18251474 . + . exon_id "ENSMUSE00001313957"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P16731"; transcript_id "ENSMUST00000183774"; transcript_name "TRMT2A-201"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18251359 18251474 . + . exon_id "ENSMUSE00001317497"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P21137"; transcript_id "ENSMUST00000184895"; transcript_name "TRMT2A-010"; transcript_source "ensembl_havana"; tss_id "TSS19906"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18251359 18251474 . + . exon_id "ENSMUSE00001317497"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P39281"; transcript_id "ENSMUST00000183969"; transcript_name "TRMT2A-002"; transcript_source "ensembl_havana"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18251359 18251474 . + . exon_id "ENSMUSE00001313957"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P39281"; transcript_id "ENSMUST00000183921"; transcript_name "TRMT2A-203"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18251359 18251474 . + . exon_id "ENSMUSE00001313957"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P13135"; transcript_id "ENSMUST00000185142"; transcript_name "TRMT2A-204"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18251359 18251660 . + . exon_id "ENSMUSE00001313751"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184144"; transcript_name "TRMT2A-006"; transcript_source "havana"; tss_id "TSS29707"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18251422 18251474 . + . exon_id "ENSMUSE00001315970"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P37688"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000183593"; transcript_name "TRMT2A-009"; transcript_source "havana"; tss_id "TSS87769"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18251549 18251660 . + . exon_id "ENSMUSE00001316395"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000183889"; transcript_name "TRMT2A-003"; transcript_source "havana"; tss_id "TSS27911"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18251549 18251660 . + . exon_id "ENSMUSE00001316588"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P13135"; transcript_id "ENSMUST00000183589"; transcript_name "TRMT2A-001"; transcript_source "havana"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18251549 18251660 . + . exon_id "ENSMUSE00001315664"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P21137"; transcript_id "ENSMUST00000183848"; transcript_name "TRMT2A-202"; transcript_source "ensembl"; tss_id "TSS80814"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18251549 18251660 . + . exon_id "ENSMUSE00001315664"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P16731"; transcript_id "ENSMUST00000183774"; transcript_name "TRMT2A-201"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18251549 18251660 . + . exon_id "ENSMUSE00001316588"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P21137"; transcript_id "ENSMUST00000184895"; transcript_name "TRMT2A-010"; transcript_source "ensembl_havana"; tss_id "TSS19906"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18251549 18251660 . + . exon_id "ENSMUSE00001316588"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P33498"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000185170"; transcript_name "TRMT2A-008"; transcript_source "havana"; tss_id "TSS81579"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18251549 18251660 . + . exon_id "ENSMUSE00001316588"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P39281"; transcript_id "ENSMUST00000183969"; transcript_name "TRMT2A-002"; transcript_source "ensembl_havana"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18251549 18251660 . + . exon_id "ENSMUSE00001316588"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P37688"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000183593"; transcript_name "TRMT2A-009"; transcript_source "havana"; tss_id "TSS87769"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18251549 18251660 . + . exon_id "ENSMUSE00001315664"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P39281"; transcript_id "ENSMUST00000183921"; transcript_name "TRMT2A-203"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18251549 18251660 . + . exon_id "ENSMUSE00001315664"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P13135"; transcript_id "ENSMUST00000185142"; transcript_name "TRMT2A-204"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18252126 18252146 . + . exon_id "ENSMUSE00001314166"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P37688"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000183593"; transcript_name "TRMT2A-009"; transcript_source "havana"; tss_id "TSS87769"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18252126 18252248 . + . exon_id "ENSMUSE00001317822"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000183889"; transcript_name "TRMT2A-003"; transcript_source "havana"; tss_id "TSS27911"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18252126 18252248 . + . exon_id "ENSMUSE00001317896"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P13135"; transcript_id "ENSMUST00000183589"; transcript_name "TRMT2A-001"; transcript_source "havana"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18252126 18252248 . + . exon_id "ENSMUSE00001315051"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P21137"; transcript_id "ENSMUST00000183848"; transcript_name "TRMT2A-202"; transcript_source "ensembl"; tss_id "TSS80814"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18252126 18252248 . + . exon_id "ENSMUSE00001315051"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P16731"; transcript_id "ENSMUST00000183774"; transcript_name "TRMT2A-201"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18252126 18252248 . + . exon_id "ENSMUSE00001317896"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P21137"; transcript_id "ENSMUST00000184895"; transcript_name "TRMT2A-010"; transcript_source "ensembl_havana"; tss_id "TSS19906"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18252126 18252248 . + . exon_id "ENSMUSE00001317896"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P33498"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000185170"; transcript_name "TRMT2A-008"; transcript_source "havana"; tss_id "TSS81579"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18252126 18252248 . + . exon_id "ENSMUSE00001317896"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P39281"; transcript_id "ENSMUST00000183969"; transcript_name "TRMT2A-002"; transcript_source "ensembl_havana"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18252126 18252248 . + . exon_id "ENSMUSE00001317822"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184076"; transcript_name "TRMT2A-005"; transcript_source "havana"; tss_id "TSS29713"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18252126 18252248 . + . exon_id "ENSMUSE00001317822"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184496"; transcript_name "TRMT2A-004"; transcript_source "havana"; tss_id "TSS29713"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18252126 18252248 . + . exon_id "ENSMUSE00001315051"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P39281"; transcript_id "ENSMUST00000183921"; transcript_name "TRMT2A-203"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18252126 18252248 . + . exon_id "ENSMUSE00001315051"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P13135"; transcript_id "ENSMUST00000185142"; transcript_name "TRMT2A-204"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18252221 18252477 . + . exon_id "ENSMUSE00001315372"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000183985"; transcript_name "TRMT2A-007"; transcript_source "havana"; tss_id "TSS77512"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18252402 18252477 . + . exon_id "ENSMUSE00001317368"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000183889"; transcript_name "TRMT2A-003"; transcript_source "havana"; tss_id "TSS27911"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18252402 18252477 . + . exon_id "ENSMUSE00001313847"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P13135"; transcript_id "ENSMUST00000183589"; transcript_name "TRMT2A-001"; transcript_source "havana"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18252402 18252477 . + . exon_id "ENSMUSE00001313832"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P21137"; transcript_id "ENSMUST00000183848"; transcript_name "TRMT2A-202"; transcript_source "ensembl"; tss_id "TSS80814"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18252402 18252477 . + . exon_id "ENSMUSE00001313832"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P16731"; transcript_id "ENSMUST00000183774"; transcript_name "TRMT2A-201"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18252402 18252477 . + . exon_id "ENSMUSE00001313847"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P21137"; transcript_id "ENSMUST00000184895"; transcript_name "TRMT2A-010"; transcript_source "ensembl_havana"; tss_id "TSS19906"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18252402 18252477 . + . exon_id "ENSMUSE00001313847"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P33498"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000185170"; transcript_name "TRMT2A-008"; transcript_source "havana"; tss_id "TSS81579"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18252402 18252477 . + . exon_id "ENSMUSE00001313847"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P39281"; transcript_id "ENSMUST00000183969"; transcript_name "TRMT2A-002"; transcript_source "ensembl_havana"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18252402 18252477 . + . exon_id "ENSMUSE00001317368"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184496"; transcript_name "TRMT2A-004"; transcript_source "havana"; tss_id "TSS29713"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18252402 18252477 . + . exon_id "ENSMUSE00001317368"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184144"; transcript_name "TRMT2A-006"; transcript_source "havana"; tss_id "TSS29707"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18252402 18252477 . + . exon_id "ENSMUSE00001313832"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P39281"; transcript_id "ENSMUST00000183921"; transcript_name "TRMT2A-203"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18252402 18252477 . + . exon_id "ENSMUSE00001313832"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P13135"; transcript_id "ENSMUST00000185142"; transcript_name "TRMT2A-204"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18252402 18253508 . + . exon_id "ENSMUSE00001317933"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184076"; transcript_name "TRMT2A-005"; transcript_source "havana"; tss_id "TSS29713"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18252719 18252835 . + . exon_id "ENSMUSE00001316030"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000183889"; transcript_name "TRMT2A-003"; transcript_source "havana"; tss_id "TSS27911"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18252719 18252835 . + . exon_id "ENSMUSE00001315389"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P21137"; transcript_id "ENSMUST00000183848"; transcript_name "TRMT2A-202"; transcript_source "ensembl"; tss_id "TSS80814"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18252719 18252835 . + . exon_id "ENSMUSE00001315389"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P16731"; transcript_id "ENSMUST00000183774"; transcript_name "TRMT2A-201"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18252719 18252835 . + . exon_id "ENSMUSE00001316839"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P21137"; transcript_id "ENSMUST00000184895"; transcript_name "TRMT2A-010"; transcript_source "ensembl_havana"; tss_id "TSS19906"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18252719 18252835 . + . exon_id "ENSMUSE00001316839"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P33498"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000185170"; transcript_name "TRMT2A-008"; transcript_source "havana"; tss_id "TSS81579"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18252719 18252835 . + . exon_id "ENSMUSE00001316030"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000183985"; transcript_name "TRMT2A-007"; transcript_source "havana"; tss_id "TSS77512"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18252719 18252835 . + . exon_id "ENSMUSE00001316839"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P39281"; transcript_id "ENSMUST00000183969"; transcript_name "TRMT2A-002"; transcript_source "ensembl_havana"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18252719 18252835 . + . exon_id "ENSMUSE00001316030"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184496"; transcript_name "TRMT2A-004"; transcript_source "havana"; tss_id "TSS29713"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18252719 18252835 . + . exon_id "ENSMUSE00001315389"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P39281"; transcript_id "ENSMUST00000183921"; transcript_name "TRMT2A-203"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18252924 18253020 . + . exon_id "ENSMUSE00001316630"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000183889"; transcript_name "TRMT2A-003"; transcript_source "havana"; tss_id "TSS27911"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18252924 18253020 . + . exon_id "ENSMUSE00001315629"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P13135"; transcript_id "ENSMUST00000183589"; transcript_name "TRMT2A-001"; transcript_source "havana"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18252924 18253020 . + . exon_id "ENSMUSE00001316686"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P21137"; transcript_id "ENSMUST00000183848"; transcript_name "TRMT2A-202"; transcript_source "ensembl"; tss_id "TSS80814"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18252924 18253020 . + . exon_id "ENSMUSE00001316686"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P16731"; transcript_id "ENSMUST00000183774"; transcript_name "TRMT2A-201"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18252924 18253020 . + . exon_id "ENSMUSE00001315629"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P21137"; transcript_id "ENSMUST00000184895"; transcript_name "TRMT2A-010"; transcript_source "ensembl_havana"; tss_id "TSS19906"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18252924 18253020 . + . exon_id "ENSMUSE00001315629"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P33498"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000185170"; transcript_name "TRMT2A-008"; transcript_source "havana"; tss_id "TSS81579"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18252924 18253020 . + . exon_id "ENSMUSE00001316630"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000183985"; transcript_name "TRMT2A-007"; transcript_source "havana"; tss_id "TSS77512"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18252924 18253020 . + . exon_id "ENSMUSE00001315629"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P39281"; transcript_id "ENSMUST00000183969"; transcript_name "TRMT2A-002"; transcript_source "ensembl_havana"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18252924 18253020 . + . exon_id "ENSMUSE00001316630"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184496"; transcript_name "TRMT2A-004"; transcript_source "havana"; tss_id "TSS29713"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18252924 18253020 . + . exon_id "ENSMUSE00001316630"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184144"; transcript_name "TRMT2A-006"; transcript_source "havana"; tss_id "TSS29707"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18252924 18253020 . + . exon_id "ENSMUSE00001316686"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P39281"; transcript_id "ENSMUST00000183921"; transcript_name "TRMT2A-203"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18252924 18253020 . + . exon_id "ENSMUSE00001316686"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P13135"; transcript_id "ENSMUST00000185142"; transcript_name "TRMT2A-204"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18253100 18253112 . + . exon_id "ENSMUSE00001314766"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P33498"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000185170"; transcript_name "TRMT2A-008"; transcript_source "havana"; tss_id "TSS81579"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18253100 18253231 . + . exon_id "ENSMUSE00001315716"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000183985"; transcript_name "TRMT2A-007"; transcript_source "havana"; tss_id "TSS77512"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18253100 18253268 . + . exon_id "ENSMUSE00001313782"; exon_number "12"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P16731"; transcript_id "ENSMUST00000183774"; transcript_name "TRMT2A-201"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18253100 18253498 . + . exon_id "ENSMUSE00001314288"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184496"; transcript_name "TRMT2A-004"; transcript_source "havana"; tss_id "TSS29713"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18253100 18253502 . + . exon_id "ENSMUSE00001315853"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000183889"; transcript_name "TRMT2A-003"; transcript_source "havana"; tss_id "TSS27911"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18253100 18253502 . + . exon_id "ENSMUSE00001316432"; exon_number "12"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P21137"; transcript_id "ENSMUST00000184895"; transcript_name "TRMT2A-010"; transcript_source "ensembl_havana"; tss_id "TSS19906"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18253100 18253502 . + . exon_id "ENSMUSE00001316432"; exon_number "12"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P39281"; transcript_id "ENSMUST00000183969"; transcript_name "TRMT2A-002"; transcript_source "ensembl_havana"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18253100 18253502 . + . exon_id "ENSMUSE00001315853"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184144"; transcript_name "TRMT2A-006"; transcript_source "havana"; tss_id "TSS29707"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18253100 18254772 . + . exon_id "ENSMUSE00001315498"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P13135"; transcript_id "ENSMUST00000183589"; transcript_name "TRMT2A-001"; transcript_source "havana"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18253100 18254772 . + . exon_id "ENSMUSE00001317780"; exon_number "12"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P21137"; transcript_id "ENSMUST00000183848"; transcript_name "TRMT2A-202"; transcript_source "ensembl"; tss_id "TSS80814"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18253100 18254772 . + . exon_id "ENSMUSE00001317780"; exon_number "12"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P39281"; transcript_id "ENSMUST00000183921"; transcript_name "TRMT2A-203"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18253100 18254772 . + . exon_id "ENSMUSE00001317780"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P13135"; transcript_id "ENSMUST00000185142"; transcript_name "TRMT2A-204"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18253273 18254772 . + . exon_id "ENSMUSE00001315718"; exon_number "13"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099305"; gene_name "TRMT2A"; gene_source "ensembl"; p_id "P16731"; transcript_id "ENSMUST00000183774"; transcript_name "TRMT2A-201"; transcript_source "ensembl"; tss_id "TSS33331"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18253412 18253501 . + . exon_id "ENSMUSE00001315869"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098930"; gene_name "TRMT2A"; gene_source "ensembl_havana"; p_id "P37688"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000183593"; transcript_name "TRMT2A-009"; transcript_source "havana"; tss_id "TSS87769"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18253948 18255605 . - . exon_id "ENSMUSE00001316740"; exon_number "14"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; p_id "P38370"; transcript_id "ENSMUST00000184916"; transcript_name "DGCR8-001"; transcript_source "ensembl_havana"; tss_id "TSS68385"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18253957 18255605 . - . exon_id "ENSMUSE00001314132"; exon_number "15"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; p_id "P38370"; transcript_id "ENSMUST00000185053"; transcript_name "DGCR8-002"; transcript_source "havana"; tss_id "TSS68386"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH processed_transcript exon 18254941 18255605 . - . exon_id "ENSMUSE00001317655"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184628"; transcript_name "DGCR8-005"; transcript_source "havana"; tss_id "TSS11055"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH processed_transcript exon 18255442 18255605 . - . exon_id "ENSMUSE00001313655"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184033"; transcript_name "DGCR8-007"; transcript_source "havana"; tss_id "TSS77896"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18256672 18256785 . - . exon_id "ENSMUSE00001313645"; exon_number "13"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; p_id "P38370"; transcript_id "ENSMUST00000184916"; transcript_name "DGCR8-001"; transcript_source "ensembl_havana"; tss_id "TSS68385"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18256672 18256785 . - . exon_id "ENSMUSE00001313645"; exon_number "14"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; p_id "P38370"; transcript_id "ENSMUST00000185053"; transcript_name "DGCR8-002"; transcript_source "havana"; tss_id "TSS68386"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH processed_transcript exon 18256672 18256785 . - . exon_id "ENSMUSE00001316063"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184628"; transcript_name "DGCR8-005"; transcript_source "havana"; tss_id "TSS11055"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH processed_transcript exon 18256672 18257130 . - . exon_id "ENSMUSE00001313998"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184033"; transcript_name "DGCR8-007"; transcript_source "havana"; tss_id "TSS77896"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18258194 18258321 . - . exon_id "ENSMUSE00001317682"; exon_number "12"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; p_id "P38370"; transcript_id "ENSMUST00000184916"; transcript_name "DGCR8-001"; transcript_source "ensembl_havana"; tss_id "TSS68385"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18258194 18258321 . - . exon_id "ENSMUSE00001317682"; exon_number "13"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; p_id "P38370"; transcript_id "ENSMUST00000185053"; transcript_name "DGCR8-002"; transcript_source "havana"; tss_id "TSS68386"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH processed_transcript exon 18258194 18258321 . - . exon_id "ENSMUSE00001316110"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184628"; transcript_name "DGCR8-005"; transcript_source "havana"; tss_id "TSS11055"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18259549 18259655 . - . exon_id "ENSMUSE00001314572"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; p_id "P38370"; transcript_id "ENSMUST00000184916"; transcript_name "DGCR8-001"; transcript_source "ensembl_havana"; tss_id "TSS68385"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18259549 18259655 . - . exon_id "ENSMUSE00001314572"; exon_number "12"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; p_id "P38370"; transcript_id "ENSMUST00000185053"; transcript_name "DGCR8-002"; transcript_source "havana"; tss_id "TSS68386"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH processed_transcript exon 18259549 18259655 . - . exon_id "ENSMUSE00001315896"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184628"; transcript_name "DGCR8-005"; transcript_source "havana"; tss_id "TSS11055"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18259879 18259979 . - . exon_id "ENSMUSE00001315595"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; p_id "P38370"; transcript_id "ENSMUST00000184916"; transcript_name "DGCR8-001"; transcript_source "ensembl_havana"; tss_id "TSS68385"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18259879 18259979 . - . exon_id "ENSMUSE00001315595"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; p_id "P38370"; transcript_id "ENSMUST00000185053"; transcript_name "DGCR8-002"; transcript_source "havana"; tss_id "TSS68386"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH processed_transcript exon 18259879 18259979 . - . exon_id "ENSMUSE00001317061"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184628"; transcript_name "DGCR8-005"; transcript_source "havana"; tss_id "TSS11055"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH processed_transcript exon 18265139 18265269 . - . exon_id "ENSMUSE00001314095"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184628"; transcript_name "DGCR8-005"; transcript_source "havana"; tss_id "TSS11055"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18271246 18272803 . - . exon_id "ENSMUSE00001314511"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000183411"; transcript_name "DGCR8-003"; transcript_source "havana"; tss_id "TSS75351"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18271429 18272803 . - . exon_id "ENSMUSE00001317871"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000185133"; transcript_name "DGCR8-004"; transcript_source "havana"; tss_id "TSS14707"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18272721 18272803 . - . exon_id "ENSMUSE00001314991"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; p_id "P38370"; transcript_id "ENSMUST00000184916"; transcript_name "DGCR8-001"; transcript_source "ensembl_havana"; tss_id "TSS68385"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18272721 18272803 . - . exon_id "ENSMUSE00001314991"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; p_id "P38370"; transcript_id "ENSMUST00000185053"; transcript_name "DGCR8-002"; transcript_source "havana"; tss_id "TSS68386"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18277166 18277264 . - . exon_id "ENSMUSE00001316243"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000183411"; transcript_name "DGCR8-003"; transcript_source "havana"; tss_id "TSS75351"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18277166 18277264 . - . exon_id "ENSMUSE00001314619"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; p_id "P38370"; transcript_id "ENSMUST00000184916"; transcript_name "DGCR8-001"; transcript_source "ensembl_havana"; tss_id "TSS68385"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18277166 18277264 . - . exon_id "ENSMUSE00001314619"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; p_id "P38370"; transcript_id "ENSMUST00000185053"; transcript_name "DGCR8-002"; transcript_source "havana"; tss_id "TSS68386"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18277166 18278140 . - . exon_id "ENSMUSE00001315763"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000185133"; transcript_name "DGCR8-004"; transcript_source "havana"; tss_id "TSS14707"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18278039 18278140 . - . exon_id "ENSMUSE00001314818"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000183411"; transcript_name "DGCR8-003"; transcript_source "havana"; tss_id "TSS75351"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18278039 18278140 . - . exon_id "ENSMUSE00001317029"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; p_id "P38370"; transcript_id "ENSMUST00000184916"; transcript_name "DGCR8-001"; transcript_source "ensembl_havana"; tss_id "TSS68385"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18278039 18278140 . - . exon_id "ENSMUSE00001317029"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; p_id "P38370"; transcript_id "ENSMUST00000185053"; transcript_name "DGCR8-002"; transcript_source "havana"; tss_id "TSS68386"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18278319 18278516 . - . exon_id "ENSMUSE00001315724"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000183411"; transcript_name "DGCR8-003"; transcript_source "havana"; tss_id "TSS75351"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18278319 18278516 . - . exon_id "ENSMUSE00001314219"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; p_id "P38370"; transcript_id "ENSMUST00000184916"; transcript_name "DGCR8-001"; transcript_source "ensembl_havana"; tss_id "TSS68385"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18278319 18278516 . - . exon_id "ENSMUSE00001314219"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; p_id "P38370"; transcript_id "ENSMUST00000185053"; transcript_name "DGCR8-002"; transcript_source "havana"; tss_id "TSS68386"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18278319 18278516 . - . exon_id "ENSMUSE00001315724"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000185133"; transcript_name "DGCR8-004"; transcript_source "havana"; tss_id "TSS14707"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18280220 18280246 . - . exon_id "ENSMUSE00001313835"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000185133"; transcript_name "DGCR8-004"; transcript_source "havana"; tss_id "TSS14707"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18280220 18280502 . - . exon_id "ENSMUSE00001316875"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000183411"; transcript_name "DGCR8-003"; transcript_source "havana"; tss_id "TSS75351"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18280220 18280502 . - . exon_id "ENSMUSE00001314928"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; p_id "P38370"; transcript_id "ENSMUST00000184916"; transcript_name "DGCR8-001"; transcript_source "ensembl_havana"; tss_id "TSS68385"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18280220 18280502 . - . exon_id "ENSMUSE00001314928"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; p_id "P38370"; transcript_id "ENSMUST00000185053"; transcript_name "DGCR8-002"; transcript_source "havana"; tss_id "TSS68386"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18280614 18280756 . - . exon_id "ENSMUSE00001313658"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000183411"; transcript_name "DGCR8-003"; transcript_source "havana"; tss_id "TSS75351"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18280614 18280756 . - . exon_id "ENSMUSE00001315388"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; p_id "P38370"; transcript_id "ENSMUST00000184916"; transcript_name "DGCR8-001"; transcript_source "ensembl_havana"; tss_id "TSS68385"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18280614 18280756 . - . exon_id "ENSMUSE00001315388"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; p_id "P38370"; transcript_id "ENSMUST00000185053"; transcript_name "DGCR8-002"; transcript_source "havana"; tss_id "TSS68386"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18283124 18283283 . - . exon_id "ENSMUSE00001314029"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000183411"; transcript_name "DGCR8-003"; transcript_source "havana"; tss_id "TSS75351"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18283124 18283283 . - . exon_id "ENSMUSE00001317585"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; p_id "P38370"; transcript_id "ENSMUST00000184916"; transcript_name "DGCR8-001"; transcript_source "ensembl_havana"; tss_id "TSS68385"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18283124 18283283 . - . exon_id "ENSMUSE00001317585"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; p_id "P38370"; transcript_id "ENSMUST00000185053"; transcript_name "DGCR8-002"; transcript_source "havana"; tss_id "TSS68386"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18283697 18284563 . - . exon_id "ENSMUSE00001313610"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000183411"; transcript_name "DGCR8-003"; transcript_source "havana"; tss_id "TSS75351"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18283697 18284696 . - . exon_id "ENSMUSE00001314442"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; p_id "P38370"; transcript_id "ENSMUST00000184916"; transcript_name "DGCR8-001"; transcript_source "ensembl_havana"; tss_id "TSS68385"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18283697 18284696 . - . exon_id "ENSMUSE00001314442"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; p_id "P38370"; transcript_id "ENSMUST00000185053"; transcript_name "DGCR8-002"; transcript_source "havana"; tss_id "TSS68386"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH miRNA exon 18284238 18284317 . - . exon_id "ENSMUSE00001315148"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000099007"; gene_name "mmu-mir-1306"; gene_source "ensembl"; transcript_id "ENSMUST00000183591"; transcript_name "mmu-mir-1306.2-201"; transcript_source "ensembl"; tss_id "TSS53414"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH miRNA exon 18284550 18284637 . - . exon_id "ENSMUSE00001317972"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000099028"; gene_name "AC084822.2"; gene_source "ensembl"; transcript_id "ENSMUST00000184145"; transcript_name "AC084822.2-201"; transcript_source "ensembl"; tss_id "TSS28587"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18285101 18285308 . - . exon_id "ENSMUSE00001314170"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; p_id "P38370"; transcript_id "ENSMUST00000185053"; transcript_name "DGCR8-002"; transcript_source "havana"; tss_id "TSS68386"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH processed_transcript exon 18287583 18287612 . - . exon_id "ENSMUSE00001317872"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184409"; transcript_name "DGCR8-006"; transcript_source "havana"; tss_id "TSS66819"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH processed_transcript exon 18289103 18289170 . - . exon_id "ENSMUSE00001316519"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184409"; transcript_name "DGCR8-006"; transcript_source "havana"; tss_id "TSS66819"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18289103 18289246 . - . exon_id "ENSMUSE00001315774"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; p_id "P38370"; transcript_id "ENSMUST00000184916"; transcript_name "DGCR8-001"; transcript_source "ensembl_havana"; tss_id "TSS68385"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18289103 18289249 . - . exon_id "ENSMUSE00001317643"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098643"; gene_name "DGCR8"; gene_source "ensembl_havana"; p_id "P38370"; transcript_id "ENSMUST00000185053"; transcript_name "DGCR8-002"; transcript_source "havana"; tss_id "TSS68386"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH nonsense_mediated_decay exon 18300825 18301552 . - . exon_id "ENSMUSE00001317968"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; p_id "P16295"; transcript_id "ENSMUST00000184457"; transcript_name "TANGO2-002"; transcript_source "havana"; tss_id "TSS79170"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18300827 18301552 . - . exon_id "ENSMUSE00001313864"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; p_id "P39899"; transcript_id "ENSMUST00000183630"; transcript_name "TANGO2-001"; transcript_source "ensembl_havana"; tss_id "TSS55782"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18301223 18301552 . - . exon_id "ENSMUSE00001317620"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184443"; transcript_name "TANGO2-007"; transcript_source "havana"; tss_id "TSS25889"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH nonsense_mediated_decay exon 18302686 18302790 . - . exon_id "ENSMUSE00001316346"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; p_id "P16295"; transcript_id "ENSMUST00000184457"; transcript_name "TANGO2-002"; transcript_source "havana"; tss_id "TSS79170"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18302686 18302790 . - . exon_id "ENSMUSE00001316115"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; p_id "P39899"; transcript_id "ENSMUST00000183630"; transcript_name "TANGO2-001"; transcript_source "ensembl_havana"; tss_id "TSS55782"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18302686 18302790 . - . exon_id "ENSMUSE00001316346"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184443"; transcript_name "TANGO2-007"; transcript_source "havana"; tss_id "TSS25889"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18303683 18303836 . - . exon_id "ENSMUSE00001315635"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; p_id "P39899"; transcript_id "ENSMUST00000183630"; transcript_name "TANGO2-001"; transcript_source "ensembl_havana"; tss_id "TSS55782"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH nonsense_mediated_decay exon 18303683 18303855 . - . exon_id "ENSMUSE00001317519"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; p_id "P16295"; transcript_id "ENSMUST00000184457"; transcript_name "TANGO2-002"; transcript_source "havana"; tss_id "TSS79170"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18303683 18304145 . - . exon_id "ENSMUSE00001317091"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184443"; transcript_name "TANGO2-007"; transcript_source "havana"; tss_id "TSS25889"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH nonsense_mediated_decay exon 18307970 18308040 . - . exon_id "ENSMUSE00001315217"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; p_id "P16295"; transcript_id "ENSMUST00000184457"; transcript_name "TANGO2-002"; transcript_source "havana"; tss_id "TSS79170"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18307970 18308040 . - . exon_id "ENSMUSE00001315217"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; p_id "P39899"; transcript_id "ENSMUST00000183630"; transcript_name "TANGO2-001"; transcript_source "ensembl_havana"; tss_id "TSS55782"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH processed_transcript exon 18307987 18308040 . - . exon_id "ENSMUSE00001313872"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184548"; transcript_name "TANGO2-009"; transcript_source "havana"; tss_id "TSS59765"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18310780 18310983 . - . exon_id "ENSMUSE00001315349"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000183948"; transcript_name "TANGO2-008"; transcript_source "havana"; tss_id "TSS41263"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH nonsense_mediated_decay exon 18310869 18310983 . - . exon_id "ENSMUSE00001314872"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; p_id "P16295"; transcript_id "ENSMUST00000184457"; transcript_name "TANGO2-002"; transcript_source "havana"; tss_id "TSS79170"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18310869 18310983 . - . exon_id "ENSMUSE00001314872"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; p_id "P39899"; transcript_id "ENSMUST00000183630"; transcript_name "TANGO2-001"; transcript_source "ensembl_havana"; tss_id "TSS55782"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH processed_transcript exon 18310869 18311453 . - . exon_id "ENSMUSE00001313643"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184548"; transcript_name "TANGO2-009"; transcript_source "havana"; tss_id "TSS59765"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH nonsense_mediated_decay exon 18310888 18310983 . - . exon_id "ENSMUSE00001317642"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; p_id "P18060"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000184324"; transcript_name "TANGO2-004"; transcript_source "havana"; tss_id "TSS20077"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18310896 18310983 . - . exon_id "ENSMUSE00001314534"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; p_id "P37828"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000184631"; transcript_name "TANGO2-010"; transcript_source "havana"; tss_id "TSS22988"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18312425 18312758 . - . exon_id "ENSMUSE00001316828"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184698"; transcript_name "TANGO2-006"; transcript_source "havana"; tss_id "TSS79169"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH nonsense_mediated_decay exon 18312639 18312758 . - . exon_id "ENSMUSE00001317900"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; p_id "P16295"; transcript_id "ENSMUST00000184457"; transcript_name "TANGO2-002"; transcript_source "havana"; tss_id "TSS79170"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18312639 18312758 . - . exon_id "ENSMUSE00001317900"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; p_id "P39899"; transcript_id "ENSMUST00000183630"; transcript_name "TANGO2-001"; transcript_source "ensembl_havana"; tss_id "TSS55782"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18312639 18312758 . - . exon_id "ENSMUSE00001317900"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; p_id "P37828"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000184631"; transcript_name "TANGO2-010"; transcript_source "havana"; tss_id "TSS22988"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH nonsense_mediated_decay exon 18312639 18312758 . - . exon_id "ENSMUSE00001316527"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; p_id "P18060"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000184324"; transcript_name "TANGO2-004"; transcript_source "havana"; tss_id "TSS20077"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18312639 18313034 . - . exon_id "ENSMUSE00001314958"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000183948"; transcript_name "TANGO2-008"; transcript_source "havana"; tss_id "TSS41263"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18316310 18316734 . - . exon_id "ENSMUSE00001317048"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000185024"; transcript_name "TANGO2-005"; transcript_source "havana"; tss_id "TSS79169"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18316646 18316734 . - . exon_id "ENSMUSE00001315013"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184698"; transcript_name "TANGO2-006"; transcript_source "havana"; tss_id "TSS79169"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH nonsense_mediated_decay exon 18316646 18316734 . - . exon_id "ENSMUSE00001314784"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; p_id "P16295"; transcript_id "ENSMUST00000184457"; transcript_name "TANGO2-002"; transcript_source "havana"; tss_id "TSS79170"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18316646 18316734 . - . exon_id "ENSMUSE00001314784"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; p_id "P39899"; transcript_id "ENSMUST00000183630"; transcript_name "TANGO2-001"; transcript_source "ensembl_havana"; tss_id "TSS55782"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18316646 18316734 . - . exon_id "ENSMUSE00001314784"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; p_id "P37828"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000184631"; transcript_name "TANGO2-010"; transcript_source "havana"; tss_id "TSS22988"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH nonsense_mediated_decay exon 18316646 18316734 . - . exon_id "ENSMUSE00001315013"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; p_id "P18060"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000184324"; transcript_name "TANGO2-004"; transcript_source "havana"; tss_id "TSS20077"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18320851 18324450 . - . exon_id "ENSMUSE00001314428"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000183496"; transcript_name "TANGO2-003"; transcript_source "havana"; tss_id "TSS76236"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH nonsense_mediated_decay exon 18324357 18324450 . - . exon_id "ENSMUSE00001316092"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; p_id "P16295"; transcript_id "ENSMUST00000184457"; transcript_name "TANGO2-002"; transcript_source "havana"; tss_id "TSS79170"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18324357 18324450 . - . exon_id "ENSMUSE00001316092"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; p_id "P39899"; transcript_id "ENSMUST00000183630"; transcript_name "TANGO2-001"; transcript_source "ensembl_havana"; tss_id "TSS55782"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18324357 18324450 . - . exon_id "ENSMUSE00001316092"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; p_id "P37828"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000184631"; transcript_name "TANGO2-010"; transcript_source "havana"; tss_id "TSS22988"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH nonsense_mediated_decay exon 18324357 18324450 . - . exon_id "ENSMUSE00001317215"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; p_id "P18060"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000184324"; transcript_name "TANGO2-004"; transcript_source "havana"; tss_id "TSS20077"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18324357 18324451 . - . exon_id "ENSMUSE00001314916"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000185024"; transcript_name "TANGO2-005"; transcript_source "havana"; tss_id "TSS79169"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18324357 18324451 . - . exon_id "ENSMUSE00001314916"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184698"; transcript_name "TANGO2-006"; transcript_source "havana"; tss_id "TSS79169"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH miRNA exon 18327393 18327472 . - . exon_id "ENSMUSE00001317685"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000098554"; gene_name "mmu-mir-185"; gene_source "ensembl"; transcript_id "ENSMUST00000184719"; transcript_name "mmu-mir-185.1-201"; transcript_source "ensembl"; tss_id "TSS32943"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18343798 18343902 . - . exon_id "ENSMUSE00001313873"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; p_id "P37828"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000184631"; transcript_name "TANGO2-010"; transcript_source "havana"; tss_id "TSS22988"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18343895 18343927 . - . exon_id "ENSMUSE00001315089"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; p_id "P39899"; transcript_id "ENSMUST00000183630"; transcript_name "TANGO2-001"; transcript_source "ensembl_havana"; tss_id "TSS55782"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH retained_intron exon 18347871 18348083 . - . exon_id "ENSMUSE00001316443"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000183496"; transcript_name "TANGO2-003"; transcript_source "havana"; tss_id "TSS76236"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH nonsense_mediated_decay exon 18347871 18348103 . - . exon_id "ENSMUSE00001314895"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098377"; gene_name "TANGO2"; gene_source "ensembl_havana"; p_id "P18060"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000184324"; transcript_name "TANGO2-004"; transcript_source "havana"; tss_id "TSS20077"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18348182 18348456 . + . exon_id "ENSMUSE00001313676"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098615"; gene_name "ARVCF"; gene_source "ensembl"; p_id "P3554"; transcript_id "ENSMUST00000184717"; transcript_name "ARVCF-201"; transcript_source "ensembl"; tss_id "TSS20081"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18352786 18352837 . + . exon_id "ENSMUSE00001315486"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098615"; gene_name "ARVCF"; gene_source "ensembl"; p_id "P3554"; transcript_id "ENSMUST00000184717"; transcript_name "ARVCF-201"; transcript_source "ensembl"; tss_id "TSS20081"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH snRNA exon 18355616 18355763 . + . exon_id "ENSMUSE00001315692"; exon_number "1"; gene_biotype "snRNA"; gene_id "ENSMUSG00000099333"; gene_name "U1"; gene_source "ensembl"; transcript_id "ENSMUST00000184340"; transcript_name "U1.1-201"; transcript_source "ensembl"; tss_id "TSS38641"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH miRNA exon 18361436 18361506 . - . exon_id "ENSMUSE00001316203"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000098384"; gene_name "AC084822.1"; gene_source "ensembl"; transcript_id "ENSMUST00000184629"; transcript_name "AC084822.1-201"; transcript_source "ensembl"; tss_id "TSS72593"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18389160 18389390 . + . exon_id "ENSMUSE00001314331"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098615"; gene_name "ARVCF"; gene_source "ensembl"; p_id "P3554"; transcript_id "ENSMUST00000184717"; transcript_name "ARVCF-201"; transcript_source "ensembl"; tss_id "TSS20081"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18396959 18397117 . + . exon_id "ENSMUSE00001313979"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098615"; gene_name "ARVCF"; gene_source "ensembl"; p_id "P3554"; transcript_id "ENSMUST00000184717"; transcript_name "ARVCF-201"; transcript_source "ensembl"; tss_id "TSS20081"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18397297 18397826 . + . exon_id "ENSMUSE00001317255"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098615"; gene_name "ARVCF"; gene_source "ensembl"; p_id "P3554"; transcript_id "ENSMUST00000184717"; transcript_name "ARVCF-201"; transcript_source "ensembl"; tss_id "TSS20081"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18398712 18399211 . + . exon_id "ENSMUSE00001317133"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098615"; gene_name "ARVCF"; gene_source "ensembl"; p_id "P3554"; transcript_id "ENSMUST00000184717"; transcript_name "ARVCF-201"; transcript_source "ensembl"; tss_id "TSS20081"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18399847 18400030 . + . exon_id "ENSMUSE00001317601"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098615"; gene_name "ARVCF"; gene_source "ensembl"; p_id "P3554"; transcript_id "ENSMUST00000184717"; transcript_name "ARVCF-201"; transcript_source "ensembl"; tss_id "TSS20081"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18400541 18400658 . + . exon_id "ENSMUSE00001313956"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098615"; gene_name "ARVCF"; gene_source "ensembl"; p_id "P3554"; transcript_id "ENSMUST00000184717"; transcript_name "ARVCF-201"; transcript_source "ensembl"; tss_id "TSS20081"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18400970 18401138 . + . exon_id "ENSMUSE00001316142"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098615"; gene_name "ARVCF"; gene_source "ensembl"; p_id "P3554"; transcript_id "ENSMUST00000184717"; transcript_name "ARVCF-201"; transcript_source "ensembl"; tss_id "TSS20081"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18401666 18401683 . + . exon_id "ENSMUSE00001316397"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098615"; gene_name "ARVCF"; gene_source "ensembl"; p_id "P3554"; transcript_id "ENSMUST00000184717"; transcript_name "ARVCF-201"; transcript_source "ensembl"; tss_id "TSS20081"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18402452 18402523 . + . exon_id "ENSMUSE00001317988"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098615"; gene_name "ARVCF"; gene_source "ensembl"; p_id "P3554"; transcript_id "ENSMUST00000184717"; transcript_name "ARVCF-201"; transcript_source "ensembl"; tss_id "TSS20081"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18403493 18403620 . + . exon_id "ENSMUSE00001314974"; exon_number "12"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098615"; gene_name "ARVCF"; gene_source "ensembl"; p_id "P3554"; transcript_id "ENSMUST00000184717"; transcript_name "ARVCF-201"; transcript_source "ensembl"; tss_id "TSS20081"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18403785 18403935 . + . exon_id "ENSMUSE00001313809"; exon_number "13"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098615"; gene_name "ARVCF"; gene_source "ensembl"; p_id "P3554"; transcript_id "ENSMUST00000184717"; transcript_name "ARVCF-201"; transcript_source "ensembl"; tss_id "TSS20081"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18404211 18404409 . + . exon_id "ENSMUSE00001316556"; exon_number "14"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098615"; gene_name "ARVCF"; gene_source "ensembl"; p_id "P3554"; transcript_id "ENSMUST00000184717"; transcript_name "ARVCF-201"; transcript_source "ensembl"; tss_id "TSS20081"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18404513 18404624 . + . exon_id "ENSMUSE00001315369"; exon_number "15"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098615"; gene_name "ARVCF"; gene_source "ensembl"; p_id "P3554"; transcript_id "ENSMUST00000184717"; transcript_name "ARVCF-201"; transcript_source "ensembl"; tss_id "TSS20081"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18404719 18404806 . + . exon_id "ENSMUSE00001317288"; exon_number "16"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098615"; gene_name "ARVCF"; gene_source "ensembl"; p_id "P3554"; transcript_id "ENSMUST00000184717"; transcript_name "ARVCF-201"; transcript_source "ensembl"; tss_id "TSS20081"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18405020 18405073 . + . exon_id "ENSMUSE00001317715"; exon_number "17"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098615"; gene_name "ARVCF"; gene_source "ensembl"; p_id "P3554"; transcript_id "ENSMUST00000184717"; transcript_name "ARVCF-201"; transcript_source "ensembl"; tss_id "TSS20081"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18405345 18405430 . + . exon_id "ENSMUSE00001314094"; exon_number "18"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098615"; gene_name "ARVCF"; gene_source "ensembl"; p_id "P3554"; transcript_id "ENSMUST00000184717"; transcript_name "ARVCF-201"; transcript_source "ensembl"; tss_id "TSS20081"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18405987 18406106 . + . exon_id "ENSMUSE00001316328"; exon_number "19"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098615"; gene_name "ARVCF"; gene_source "ensembl"; p_id "P3554"; transcript_id "ENSMUST00000184717"; transcript_name "ARVCF-201"; transcript_source "ensembl"; tss_id "TSS20081"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18406492 18407957 . + . exon_id "ENSMUSE00001315540"; exon_number "20"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098615"; gene_name "ARVCF"; gene_source "ensembl"; p_id "P3554"; transcript_id "ENSMUST00000184717"; transcript_name "ARVCF-201"; transcript_source "ensembl"; tss_id "TSS20081"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18407771 18408925 . - . exon_id "ENSMUSE00001314692"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098892"; gene_name "COMT"; gene_source "ensembl"; p_id "P39165"; transcript_id "ENSMUST00000183626"; transcript_name "COMT-201"; transcript_source "ensembl"; tss_id "TSS49104"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18407771 18408925 . - . exon_id "ENSMUSE00001314692"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098892"; gene_name "COMT"; gene_source "ensembl"; p_id "P39165"; transcript_id "ENSMUST00000185030"; transcript_name "COMT-202"; transcript_source "ensembl"; tss_id "TSS49104"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18411568 18411699 . - . exon_id "ENSMUSE00001314070"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098892"; gene_name "COMT"; gene_source "ensembl"; p_id "P39165"; transcript_id "ENSMUST00000183626"; transcript_name "COMT-201"; transcript_source "ensembl"; tss_id "TSS49104"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18411568 18411699 . - . exon_id "ENSMUSE00001314070"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098892"; gene_name "COMT"; gene_source "ensembl"; p_id "P39165"; transcript_id "ENSMUST00000185030"; transcript_name "COMT-202"; transcript_source "ensembl"; tss_id "TSS49104"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18412012 18412205 . - . exon_id "ENSMUSE00001316390"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098892"; gene_name "COMT"; gene_source "ensembl"; p_id "P39165"; transcript_id "ENSMUST00000183626"; transcript_name "COMT-201"; transcript_source "ensembl"; tss_id "TSS49104"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18412012 18412205 . - . exon_id "ENSMUSE00001316390"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098892"; gene_name "COMT"; gene_source "ensembl"; p_id "P39165"; transcript_id "ENSMUST00000185030"; transcript_name "COMT-202"; transcript_source "ensembl"; tss_id "TSS49104"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18412575 18412842 . - . exon_id "ENSMUSE00001314471"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098892"; gene_name "COMT"; gene_source "ensembl"; p_id "P39165"; transcript_id "ENSMUST00000183626"; transcript_name "COMT-201"; transcript_source "ensembl"; tss_id "TSS49104"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18412575 18412842 . - . exon_id "ENSMUSE00001315178"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098892"; gene_name "COMT"; gene_source "ensembl"; p_id "P39165"; transcript_id "ENSMUST00000185030"; transcript_name "COMT-202"; transcript_source "ensembl"; tss_id "TSS49104"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18425189 18425245 . - . exon_id "ENSMUSE00001316548"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098892"; gene_name "COMT"; gene_source "ensembl"; p_id "P39165"; transcript_id "ENSMUST00000185030"; transcript_name "COMT-202"; transcript_source "ensembl"; tss_id "TSS49104"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18427241 18427601 . - . exon_id "ENSMUSE00001317823"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098892"; gene_name "COMT"; gene_source "ensembl"; p_id "P39165"; transcript_id "ENSMUST00000183626"; transcript_name "COMT-201"; transcript_source "ensembl"; tss_id "TSS49104"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18427241 18427601 . - . exon_id "ENSMUSE00001317823"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098892"; gene_name "COMT"; gene_source "ensembl"; p_id "P39165"; transcript_id "ENSMUST00000185030"; transcript_name "COMT-202"; transcript_source "ensembl"; tss_id "TSS49104"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18427302 18427444 . + . exon_id "ENSMUSE00001317605"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P30862"; transcript_id "ENSMUST00000184600"; transcript_name "AC133487.1-201"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18427302 18427444 . + . exon_id "ENSMUSE00001317605"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P31447"; transcript_id "ENSMUST00000185160"; transcript_name "AC133487.1-202"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18430696 18430761 . + . exon_id "ENSMUSE00001317965"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P30862"; transcript_id "ENSMUST00000184600"; transcript_name "AC133487.1-201"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18430696 18430761 . + . exon_id "ENSMUSE00001317965"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P31447"; transcript_id "ENSMUST00000185160"; transcript_name "AC133487.1-202"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18437446 18437502 . + . exon_id "ENSMUSE00001316916"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P30862"; transcript_id "ENSMUST00000184600"; transcript_name "AC133487.1-201"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18437446 18437502 . + . exon_id "ENSMUSE00001316916"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P31447"; transcript_id "ENSMUST00000185160"; transcript_name "AC133487.1-202"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18438387 18438531 . + . exon_id "ENSMUSE00001315499"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P30862"; transcript_id "ENSMUST00000184600"; transcript_name "AC133487.1-201"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18438387 18438531 . + . exon_id "ENSMUSE00001315499"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P31447"; transcript_id "ENSMUST00000185160"; transcript_name "AC133487.1-202"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18439204 18439278 . + . exon_id "ENSMUSE00001316433"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P30862"; transcript_id "ENSMUST00000184600"; transcript_name "AC133487.1-201"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18439204 18439278 . + . exon_id "ENSMUSE00001316433"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P31447"; transcript_id "ENSMUST00000185160"; transcript_name "AC133487.1-202"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18441678 18441756 . + . exon_id "ENSMUSE00001317579"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P30862"; transcript_id "ENSMUST00000184600"; transcript_name "AC133487.1-201"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18441678 18441756 . + . exon_id "ENSMUSE00001317579"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P31447"; transcript_id "ENSMUST00000185160"; transcript_name "AC133487.1-202"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18442633 18442695 . + . exon_id "ENSMUSE00001317917"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P30862"; transcript_id "ENSMUST00000184600"; transcript_name "AC133487.1-201"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18442633 18442695 . + . exon_id "ENSMUSE00001317917"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P31447"; transcript_id "ENSMUST00000185160"; transcript_name "AC133487.1-202"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18444089 18444159 . + . exon_id "ENSMUSE00001315271"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P30862"; transcript_id "ENSMUST00000184600"; transcript_name "AC133487.1-201"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18444089 18444159 . + . exon_id "ENSMUSE00001315271"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P31447"; transcript_id "ENSMUST00000185160"; transcript_name "AC133487.1-202"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18447571 18447580 . + . exon_id "ENSMUSE00001314201"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P30862"; transcript_id "ENSMUST00000184600"; transcript_name "AC133487.1-201"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18454606 18454625 . + . exon_id "ENSMUSE00001315962"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P31447"; transcript_id "ENSMUST00000185160"; transcript_name "AC133487.1-202"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18455361 18455465 . + . exon_id "ENSMUSE00001317200"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P30862"; transcript_id "ENSMUST00000184600"; transcript_name "AC133487.1-201"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18455374 18455465 . + . exon_id "ENSMUSE00001313649"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P31447"; transcript_id "ENSMUST00000185160"; transcript_name "AC133487.1-202"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18456909 18457083 . + . exon_id "ENSMUSE00001314531"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P30862"; transcript_id "ENSMUST00000184600"; transcript_name "AC133487.1-201"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18456909 18457083 . + . exon_id "ENSMUSE00001314531"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P31447"; transcript_id "ENSMUST00000185160"; transcript_name "AC133487.1-202"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18469635 18469771 . + . exon_id "ENSMUSE00001313837"; exon_number "12"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P30862"; transcript_id "ENSMUST00000184600"; transcript_name "AC133487.1-201"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18469635 18469771 . + . exon_id "ENSMUSE00001313837"; exon_number "12"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P31447"; transcript_id "ENSMUST00000185160"; transcript_name "AC133487.1-202"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18473039 18473134 . + . exon_id "ENSMUSE00001315300"; exon_number "13"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P30862"; transcript_id "ENSMUST00000184600"; transcript_name "AC133487.1-201"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18473039 18473134 . + . exon_id "ENSMUSE00001315300"; exon_number "13"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P31447"; transcript_id "ENSMUST00000185160"; transcript_name "AC133487.1-202"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18473679 18473771 . + . exon_id "ENSMUSE00001315743"; exon_number "14"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P30862"; transcript_id "ENSMUST00000184600"; transcript_name "AC133487.1-201"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18473679 18473771 . + . exon_id "ENSMUSE00001315743"; exon_number "14"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P31447"; transcript_id "ENSMUST00000185160"; transcript_name "AC133487.1-202"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18475567 18475638 . + . exon_id "ENSMUSE00001316522"; exon_number "15"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P30862"; transcript_id "ENSMUST00000184600"; transcript_name "AC133487.1-201"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18475567 18475638 . + . exon_id "ENSMUSE00001316522"; exon_number "15"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P31447"; transcript_id "ENSMUST00000185160"; transcript_name "AC133487.1-202"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18476407 18476504 . + . exon_id "ENSMUSE00001317282"; exon_number "16"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P30862"; transcript_id "ENSMUST00000184600"; transcript_name "AC133487.1-201"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18476407 18476504 . + . exon_id "ENSMUSE00001317282"; exon_number "16"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P31447"; transcript_id "ENSMUST00000185160"; transcript_name "AC133487.1-202"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18478536 18478656 . + . exon_id "ENSMUSE00001317185"; exon_number "17"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P31447"; transcript_id "ENSMUST00000185160"; transcript_name "AC133487.1-202"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18478536 18478742 . + . exon_id "ENSMUSE00001314175"; exon_number "17"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P30862"; transcript_id "ENSMUST00000184600"; transcript_name "AC133487.1-201"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18478660 18478742 . + . exon_id "ENSMUSE00001314500"; exon_number "18"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P31447"; transcript_id "ENSMUST00000185160"; transcript_name "AC133487.1-202"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18479743 18479957 . + . exon_id "ENSMUSE00001316551"; exon_number "18"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P30862"; transcript_id "ENSMUST00000184600"; transcript_name "AC133487.1-201"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG3833_PATCH' not found in Genome fasta files for line: MG3833_PATCH protein_coding exon 18479743 18479957 . + . exon_id "ENSMUSE00001316551"; exon_number "19"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099282"; gene_name "AC133487.1"; gene_source "ensembl"; p_id "P31447"; transcript_id "ENSMUST00000185160"; transcript_name "AC133487.1-202"; transcript_source "ensembl"; tss_id "TSS18253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH processed_pseudogene exon 143242024 143243368 . - . exon_id "ENSMUSE00001128709"; exon_number "1"; gene_biotype "pseudogene"; gene_id "ENSMUSG00000096961"; gene_name "RP23-348F1.1"; gene_source "havana"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000181923"; transcript_name "RP23-348F1.1-001"; transcript_source "havana"; tss_id "TSS78829"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143267431 143268426 . - . exon_id "ENSMUSE00001161146"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096951"; gene_name "PDPN"; gene_source "ensembl_havana"; p_id "P33247"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000181754"; transcript_name "PDPN-001"; transcript_source "ensembl_havana"; tss_id "TSS31483"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143268346 143268426 . - . exon_id "ENSMUSE00001144639"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096951"; gene_name "PDPN"; gene_source "ensembl_havana"; p_id "P4687"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000181012"; transcript_name "PDPN-002"; transcript_source "havana"; tss_id "TSS38323"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143269188 143269299 . - . exon_id "ENSMUSE00001112037"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096951"; gene_name "PDPN"; gene_source "ensembl_havana"; p_id "P33247"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000181754"; transcript_name "PDPN-001"; transcript_source "ensembl_havana"; tss_id "TSS31483"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143269188 143269299 . - . exon_id "ENSMUSE00001112037"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096951"; gene_name "PDPN"; gene_source "ensembl_havana"; p_id "P4687"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000181012"; transcript_name "PDPN-002"; transcript_source "havana"; tss_id "TSS38323"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143270523 143270561 . - . exon_id "ENSMUSE00001188295"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096951"; gene_name "PDPN"; gene_source "ensembl_havana"; p_id "P33247"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000181754"; transcript_name "PDPN-001"; transcript_source "ensembl_havana"; tss_id "TSS31483"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143273900 143274056 . - . exon_id "ENSMUSE00001148797"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096951"; gene_name "PDPN"; gene_source "ensembl_havana"; p_id "P33247"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000181754"; transcript_name "PDPN-001"; transcript_source "ensembl_havana"; tss_id "TSS31483"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143273900 143274056 . - . exon_id "ENSMUSE00001148797"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096951"; gene_name "PDPN"; gene_source "ensembl_havana"; p_id "P4687"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000181012"; transcript_name "PDPN-002"; transcript_source "havana"; tss_id "TSS38323"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143276071 143276207 . - . exon_id "ENSMUSE00001192252"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096951"; gene_name "PDPN"; gene_source "ensembl_havana"; p_id "P33247"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000181754"; transcript_name "PDPN-001"; transcript_source "ensembl_havana"; tss_id "TSS31483"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143276071 143276207 . - . exon_id "ENSMUSE00001192252"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096951"; gene_name "PDPN"; gene_source "ensembl_havana"; p_id "P4687"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000181012"; transcript_name "PDPN-002"; transcript_source "havana"; tss_id "TSS38323"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143299189 143299463 . - . exon_id "ENSMUSE00001171565"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096951"; gene_name "PDPN"; gene_source "ensembl_havana"; p_id "P4687"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000181012"; transcript_name "PDPN-002"; transcript_source "havana"; tss_id "TSS38323"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143299189 143299564 . - . exon_id "ENSMUSE00001154561"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096951"; gene_name "PDPN"; gene_source "ensembl_havana"; p_id "P33247"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000181754"; transcript_name "PDPN-001"; transcript_source "ensembl_havana"; tss_id "TSS31483"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH misc_RNA exon 143340399 143340706 . + . exon_id "ENSMUSE00001153984"; exon_number "1"; gene_biotype "misc_RNA"; gene_id "ENSMUSG00000097647"; gene_name "7SK"; gene_source "ensembl"; transcript_id "ENSMUST00000180493"; transcript_name "7SK.1-201"; transcript_source "ensembl"; tss_id "TSS5726"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143349757 143350811 . + . exon_id "ENSMUSE00001181814"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097351"; gene_name "LRRC38"; gene_source "ensembl_havana"; p_id "P13401"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000181564"; transcript_name "LRRC38-001"; transcript_source "ensembl_havana"; tss_id "TSS61836"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143369764 143371032 . + . exon_id "ENSMUSE00001113957"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097351"; gene_name "LRRC38"; gene_source "ensembl_havana"; p_id "P13401"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000181564"; transcript_name "LRRC38-001"; transcript_source "ensembl_havana"; tss_id "TSS61836"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH processed_pseudogene exon 143389659 143390416 . + . exon_id "ENSMUSE00001186750"; exon_number "1"; gene_biotype "pseudogene"; gene_id "ENSMUSG00000097478"; gene_name "Anp32b-ps1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000181922"; transcript_name "Anp32b-ps1-001"; transcript_source "havana"; tss_id "TSS79527"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH processed_pseudogene exon 143389659 143390417 . + . exon_id "ENSMUSE00001134953"; exon_number "1"; gene_biotype "pseudogene"; gene_id "ENSMUSG00000097478"; gene_name "Anp32b-ps1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180641"; transcript_name "Anp32b-ps1-201"; transcript_source "ensembl"; tss_id "TSS79527"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143394428 143394543 . + . exon_id "ENSMUSE00001173051"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097880"; gene_name "PRAMEL1"; gene_source "ensembl_havana"; p_id "P17432"; transcript_id "ENSMUST00000181019"; transcript_name "PRAMEL1-001"; transcript_source "ensembl_havana"; tss_id "TSS47296"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143396430 143396747 . + . exon_id "ENSMUSE00001140215"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097880"; gene_name "PRAMEL1"; gene_source "ensembl_havana"; p_id "P17432"; transcript_id "ENSMUST00000181019"; transcript_name "PRAMEL1-001"; transcript_source "ensembl_havana"; tss_id "TSS47296"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143397050 143397616 . + . exon_id "ENSMUSE00001152844"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097880"; gene_name "PRAMEL1"; gene_source "ensembl_havana"; p_id "P17432"; transcript_id "ENSMUST00000181019"; transcript_name "PRAMEL1-001"; transcript_source "ensembl_havana"; tss_id "TSS47296"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143398368 143400160 . + . exon_id "ENSMUSE00001161469"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097880"; gene_name "PRAMEL1"; gene_source "ensembl_havana"; p_id "P17432"; transcript_id "ENSMUST00000181019"; transcript_name "PRAMEL1-001"; transcript_source "ensembl_havana"; tss_id "TSS47296"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH unprocessed_pseudogene exon 143402344 143402542 . + . exon_id "ENSMUSE00001198771"; exon_number "1"; gene_biotype "pseudogene"; gene_id "ENSMUSG00000097359"; gene_name "RP23-58H5.2"; gene_source "havana"; transcript_id "ENSMUST00000180724"; transcript_name "RP23-58H5.2-001"; transcript_source "havana"; tss_id "TSS34002"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH unprocessed_pseudogene exon 143402901 143403413 . + . exon_id "ENSMUSE00001164536"; exon_number "2"; gene_biotype "pseudogene"; gene_id "ENSMUSG00000097359"; gene_name "RP23-58H5.2"; gene_source "havana"; transcript_id "ENSMUST00000180724"; transcript_name "RP23-58H5.2-001"; transcript_source "havana"; tss_id "TSS34002"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143412426 143413091 . + . exon_id "ENSMUSE00001182249"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097778"; gene_name "PRAMEF8"; gene_source "ensembl_havana"; p_id "P2750"; transcript_id "ENSMUST00000180619"; transcript_name "PRAMEF8-001"; transcript_source "ensembl_havana"; tss_id "TSS3164"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143412972 143413091 . + . exon_id "ENSMUSE00001173491"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097778"; gene_name "PRAMEF8"; gene_source "ensembl_havana"; p_id "P43701"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000181624"; transcript_name "PRAMEF8-004"; transcript_source "havana"; tss_id "TSS70008"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143412987 143413091 . + . exon_id "ENSMUSE00001193408"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097778"; gene_name "PRAMEF8"; gene_source "ensembl_havana"; p_id "P2750"; transcript_id "ENSMUST00000180614"; transcript_name "PRAMEF8-002"; transcript_source "ensembl_havana"; tss_id "TSS30882"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143413009 143413091 . + . exon_id "ENSMUSE00001102689"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097778"; gene_name "PRAMEF8"; gene_source "ensembl_havana"; p_id "P10087"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000181314"; transcript_name "PRAMEF8-005"; transcript_source "havana"; tss_id "TSS16853"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH processed_transcript exon 143413010 143413091 . + . exon_id "ENSMUSE00001157474"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097778"; gene_name "PRAMEF8"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180510"; transcript_name "PRAMEF8-003"; transcript_source "havana"; tss_id "TSS71770"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH processed_transcript exon 143414105 143414374 . + . exon_id "ENSMUSE00001199274"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097778"; gene_name "PRAMEF8"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000180510"; transcript_name "PRAMEF8-003"; transcript_source "havana"; tss_id "TSS71770"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143415349 143415413 . + . exon_id "ENSMUSE00001114731"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097778"; gene_name "PRAMEF8"; gene_source "ensembl_havana"; p_id "P2750"; transcript_id "ENSMUST00000180619"; transcript_name "PRAMEF8-001"; transcript_source "ensembl_havana"; tss_id "TSS3164"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143415349 143415413 . + . exon_id "ENSMUSE00001114731"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097778"; gene_name "PRAMEF8"; gene_source "ensembl_havana"; p_id "P10087"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000181314"; transcript_name "PRAMEF8-005"; transcript_source "havana"; tss_id "TSS16853"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143416620 143416842 . + . exon_id "ENSMUSE00001156709"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097778"; gene_name "PRAMEF8"; gene_source "ensembl_havana"; p_id "P43701"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000181624"; transcript_name "PRAMEF8-004"; transcript_source "havana"; tss_id "TSS70008"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143416620 143416952 . + . exon_id "ENSMUSE00001175038"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097778"; gene_name "PRAMEF8"; gene_source "ensembl_havana"; p_id "P10087"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000181314"; transcript_name "PRAMEF8-005"; transcript_source "havana"; tss_id "TSS16853"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143416640 143416952 . + . exon_id "ENSMUSE00001136579"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097778"; gene_name "PRAMEF8"; gene_source "ensembl_havana"; p_id "P2750"; transcript_id "ENSMUST00000180619"; transcript_name "PRAMEF8-001"; transcript_source "ensembl_havana"; tss_id "TSS3164"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143416640 143416952 . + . exon_id "ENSMUSE00001136579"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097778"; gene_name "PRAMEF8"; gene_source "ensembl_havana"; p_id "P2750"; transcript_id "ENSMUST00000180614"; transcript_name "PRAMEF8-002"; transcript_source "ensembl_havana"; tss_id "TSS30882"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143417373 143417669 . + . exon_id "ENSMUSE00001146406"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097778"; gene_name "PRAMEF8"; gene_source "ensembl_havana"; p_id "P10087"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000181314"; transcript_name "PRAMEF8-005"; transcript_source "havana"; tss_id "TSS16853"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143417373 143417960 . + . exon_id "ENSMUSE00001116878"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097778"; gene_name "PRAMEF8"; gene_source "ensembl_havana"; p_id "P2750"; transcript_id "ENSMUST00000180619"; transcript_name "PRAMEF8-001"; transcript_source "ensembl_havana"; tss_id "TSS3164"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143417373 143417960 . + . exon_id "ENSMUSE00001116878"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097778"; gene_name "PRAMEF8"; gene_source "ensembl_havana"; p_id "P2750"; transcript_id "ENSMUST00000180614"; transcript_name "PRAMEF8-002"; transcript_source "ensembl_havana"; tss_id "TSS30882"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143418838 143421091 . + . exon_id "ENSMUSE00001132352"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097778"; gene_name "PRAMEF8"; gene_source "ensembl_havana"; p_id "P2750"; transcript_id "ENSMUST00000180619"; transcript_name "PRAMEF8-001"; transcript_source "ensembl_havana"; tss_id "TSS3164"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143418838 143421091 . + . exon_id "ENSMUSE00001132352"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097778"; gene_name "PRAMEF8"; gene_source "ensembl_havana"; p_id "P2750"; transcript_id "ENSMUST00000180614"; transcript_name "PRAMEF8-002"; transcript_source "ensembl_havana"; tss_id "TSS30882"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143437164 143438033 . - . exon_id "ENSMUSE00001178859"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097153"; gene_name "OOG4"; gene_source "ensembl_havana"; p_id "P24702"; transcript_id "ENSMUST00000180552"; transcript_name "OOG4-001"; transcript_source "ensembl_havana"; tss_id "TSS44820"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143437165 143438033 . - . exon_id "ENSMUSE00001141338"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097153"; gene_name "OOG4"; gene_source "ensembl_havana"; p_id "P31640"; transcript_id "ENSMUST00000180702"; transcript_name "OOG4-002"; transcript_source "havana"; tss_id "TSS77329"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143438650 143439234 . - . exon_id "ENSMUSE00001129485"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097153"; gene_name "OOG4"; gene_source "ensembl_havana"; p_id "P31640"; transcript_id "ENSMUST00000180702"; transcript_name "OOG4-002"; transcript_source "havana"; tss_id "TSS77329"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143438650 143439234 . - . exon_id "ENSMUSE00001129485"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097153"; gene_name "OOG4"; gene_source "ensembl_havana"; p_id "P24702"; transcript_id "ENSMUST00000180552"; transcript_name "OOG4-001"; transcript_source "ensembl_havana"; tss_id "TSS44820"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143439892 143440202 . - . exon_id "ENSMUSE00001284450"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097153"; gene_name "OOG4"; gene_source "ensembl_havana"; p_id "P31640"; transcript_id "ENSMUST00000180702"; transcript_name "OOG4-002"; transcript_source "havana"; tss_id "TSS77329"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143439892 143440202 . - . exon_id "ENSMUSE00001293540"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097153"; gene_name "OOG4"; gene_source "ensembl_havana"; p_id "P24702"; transcript_id "ENSMUST00000180552"; transcript_name "OOG4-001"; transcript_source "ensembl_havana"; tss_id "TSS44820"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143440657 143440799 . - . exon_id "ENSMUSE00001110008"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097153"; gene_name "OOG4"; gene_source "ensembl_havana"; p_id "P24702"; transcript_id "ENSMUST00000180552"; transcript_name "OOG4-001"; transcript_source "ensembl_havana"; tss_id "TSS44820"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143450253 143450304 . - . exon_id "ENSMUSE00001143891"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097153"; gene_name "OOG4"; gene_source "ensembl_havana"; p_id "P31640"; transcript_id "ENSMUST00000180702"; transcript_name "OOG4-002"; transcript_source "havana"; tss_id "TSS77329"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143450253 143450324 . - . exon_id "ENSMUSE00001134377"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097153"; gene_name "OOG4"; gene_source "ensembl_havana"; p_id "P24702"; transcript_id "ENSMUST00000180552"; transcript_name "OOG4-001"; transcript_source "ensembl_havana"; tss_id "TSS44820"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH processed_pseudogene exon 143458378 143458636 . - . exon_id "ENSMUSE00001100237"; exon_number "2"; gene_biotype "pseudogene"; gene_id "ENSMUSG00000097105"; gene_name "RP23-58H5.5"; gene_source "havana"; transcript_id "ENSMUST00000181783"; transcript_name "RP23-58H5.5-001"; transcript_source "havana"; tss_id "TSS53438"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH processed_pseudogene exon 143458843 143460538 . - . exon_id "ENSMUSE00001187766"; exon_number "1"; gene_biotype "pseudogene"; gene_id "ENSMUSG00000097105"; gene_name "RP23-58H5.5"; gene_source "havana"; transcript_id "ENSMUST00000181783"; transcript_name "RP23-58H5.5-001"; transcript_source "havana"; tss_id "TSS53438"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH unprocessed_pseudogene exon 143464274 143464774 . - . exon_id "ENSMUSE00001151511"; exon_number "1"; gene_biotype "pseudogene"; gene_id "ENSMUSG00000097549"; gene_name "RP23-58H5.6"; gene_source "havana"; transcript_id "ENSMUST00000181902"; transcript_name "RP23-58H5.6-001"; transcript_source "havana"; tss_id "TSS54291"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH processed_pseudogene exon 143487926 143488178 . + . exon_id "ENSMUSE00001132321"; exon_number "1"; gene_biotype "pseudogene"; gene_id "ENSMUSG00000097555"; gene_name "RP23-58H5.7"; gene_source "havana"; transcript_id "ENSMUST00000181037"; transcript_name "RP23-58H5.7-001"; transcript_source "havana"; tss_id "TSS19734"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH unprocessed_pseudogene exon 143499435 143499778 . + . exon_id "ENSMUSE00001126895"; exon_number "1"; gene_biotype "pseudogene"; gene_id "ENSMUSG00000097475"; gene_name "RP23-58H5.8"; gene_source "havana"; transcript_id "ENSMUST00000181878"; transcript_name "RP23-58H5.8-001"; transcript_source "havana"; tss_id "TSS86217"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH unprocessed_pseudogene exon 143500114 143500697 . + . exon_id "ENSMUSE00001130592"; exon_number "2"; gene_biotype "pseudogene"; gene_id "ENSMUSG00000097475"; gene_name "RP23-58H5.8"; gene_source "havana"; transcript_id "ENSMUST00000181878"; transcript_name "RP23-58H5.8-001"; transcript_source "havana"; tss_id "TSS86217"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH unprocessed_pseudogene exon 143501500 143502095 . + . exon_id "ENSMUSE00001107931"; exon_number "3"; gene_biotype "pseudogene"; gene_id "ENSMUSG00000097475"; gene_name "RP23-58H5.8"; gene_source "havana"; transcript_id "ENSMUST00000181878"; transcript_name "RP23-58H5.8-001"; transcript_source "havana"; tss_id "TSS86217"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143511343 143511358 . + . exon_id "ENSMUSE00001181640"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097046"; gene_name "GM13043"; gene_source "ensembl_havana"; p_id "P37645"; transcript_id "ENSMUST00000181513"; transcript_name "GM13043-001"; transcript_source "ensembl_havana"; tss_id "TSS33729"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143515037 143515333 . + . exon_id "ENSMUSE00001145428"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097046"; gene_name "GM13043"; gene_source "ensembl_havana"; p_id "P37645"; transcript_id "ENSMUST00000181513"; transcript_name "GM13043-001"; transcript_source "ensembl_havana"; tss_id "TSS33729"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143515810 143516400 . + . exon_id "ENSMUSE00001177894"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097046"; gene_name "GM13043"; gene_source "ensembl_havana"; p_id "P37645"; transcript_id "ENSMUST00000181513"; transcript_name "GM13043-001"; transcript_source "ensembl_havana"; tss_id "TSS33729"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143516681 143517831 . + . exon_id "ENSMUSE00001131461"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097046"; gene_name "GM13043"; gene_source "ensembl_havana"; p_id "P37645"; transcript_id "ENSMUST00000181513"; transcript_name "GM13043-001"; transcript_source "ensembl_havana"; tss_id "TSS33729"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143527062 143527107 . + . exon_id "ENSMUSE00001170521"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097856"; gene_name "BC080695"; gene_source "ensembl_havana"; p_id "P963"; transcript_id "ENSMUST00000180918"; transcript_name "BC080695-202"; transcript_source "ensembl"; tss_id "TSS82322"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143527071 143527107 . + . exon_id "ENSMUSE00001133873"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097192"; gene_name "GM13043"; gene_source "ensembl_havana"; p_id "P36618"; transcript_id "ENSMUST00000181004"; transcript_name "GM13043-001"; transcript_source "ensembl_havana"; tss_id "TSS65832"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143555423 143555736 . + . exon_id "ENSMUSE00001156039"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097192"; gene_name "GM13043"; gene_source "ensembl_havana"; p_id "P36618"; transcript_id "ENSMUST00000181004"; transcript_name "GM13043-001"; transcript_source "ensembl_havana"; tss_id "TSS65832"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143556213 143556803 . + . exon_id "ENSMUSE00001131547"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097192"; gene_name "GM13043"; gene_source "ensembl_havana"; p_id "P36618"; transcript_id "ENSMUST00000181004"; transcript_name "GM13043-001"; transcript_source "ensembl_havana"; tss_id "TSS65832"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143557084 143558234 . + . exon_id "ENSMUSE00001150015"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097192"; gene_name "GM13043"; gene_source "ensembl_havana"; p_id "P36618"; transcript_id "ENSMUST00000181004"; transcript_name "GM13043-001"; transcript_source "ensembl_havana"; tss_id "TSS65832"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143567475 143567512 . + . exon_id "ENSMUSE00001135827"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097856"; gene_name "BC080695"; gene_source "ensembl_havana"; p_id "P963"; transcript_id "ENSMUST00000181763"; transcript_name "BC080695-001"; transcript_source "ensembl_havana"; tss_id "TSS52452"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143570985 143571298 . + . exon_id "ENSMUSE00001187785"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097856"; gene_name "BC080695"; gene_source "ensembl_havana"; p_id "P963"; transcript_id "ENSMUST00000180918"; transcript_name "BC080695-202"; transcript_source "ensembl"; tss_id "TSS82322"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143570985 143571298 . + . exon_id "ENSMUSE00001187785"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097856"; gene_name "BC080695"; gene_source "ensembl_havana"; p_id "P963"; transcript_id "ENSMUST00000181763"; transcript_name "BC080695-001"; transcript_source "ensembl_havana"; tss_id "TSS52452"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143571776 143572366 . + . exon_id "ENSMUSE00001199522"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097856"; gene_name "BC080695"; gene_source "ensembl_havana"; p_id "P963"; transcript_id "ENSMUST00000180918"; transcript_name "BC080695-202"; transcript_source "ensembl"; tss_id "TSS82322"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143571776 143572366 . + . exon_id "ENSMUSE00001199522"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097856"; gene_name "BC080695"; gene_source "ensembl_havana"; p_id "P963"; transcript_id "ENSMUST00000181763"; transcript_name "BC080695-001"; transcript_source "ensembl_havana"; tss_id "TSS52452"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143572647 143573797 . + . exon_id "ENSMUSE00001181142"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097856"; gene_name "BC080695"; gene_source "ensembl_havana"; p_id "P963"; transcript_id "ENSMUST00000180918"; transcript_name "BC080695-202"; transcript_source "ensembl"; tss_id "TSS82322"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4136_PATCH' not found in Genome fasta files for line: MG4136_PATCH protein_coding exon 143572647 143573798 . + . exon_id "ENSMUSE00001116049"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097856"; gene_name "BC080695"; gene_source "ensembl_havana"; p_id "P963"; transcript_id "ENSMUST00000181763"; transcript_name "BC080695-001"; transcript_source "ensembl_havana"; tss_id "TSS52452"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH unprocessed_pseudogene exon 3086001 3086138 . + . exon_id "ENSMUSE00001124354"; exon_number "1"; gene_biotype "pseudogene"; gene_id "ENSMUSG00000097606"; gene_name "RP24-364D22.1"; gene_source "havana"; transcript_id "ENSMUST00000180736"; transcript_name "RP24-364D22.1-001"; transcript_source "havana"; tss_id "TSS2895"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH unprocessed_pseudogene exon 3086768 3086969 . + . exon_id "ENSMUSE00001154122"; exon_number "2"; gene_biotype "pseudogene"; gene_id "ENSMUSG00000097606"; gene_name "RP24-364D22.1"; gene_source "havana"; transcript_id "ENSMUST00000180736"; transcript_name "RP24-364D22.1-001"; transcript_source "havana"; tss_id "TSS2895"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH unprocessed_pseudogene exon 3087702 3087834 . + . exon_id "ENSMUSE00001150288"; exon_number "3"; gene_biotype "pseudogene"; gene_id "ENSMUSG00000097606"; gene_name "RP24-364D22.1"; gene_source "havana"; transcript_id "ENSMUST00000180736"; transcript_name "RP24-364D22.1-001"; transcript_source "havana"; tss_id "TSS2895"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3108535 3110169 . - . exon_id "ENSMUSE00001177392"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097866"; gene_name "AC132586.1"; gene_source "ensembl"; p_id "P31164"; transcript_id "ENSMUST00000181324"; transcript_name "AC132586.1-201"; transcript_source "ensembl"; tss_id "TSS2736"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3110218 3111874 . - . exon_id "ENSMUSE00001164823"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097866"; gene_name "AC132586.1"; gene_source "ensembl"; p_id "P31164"; transcript_id "ENSMUST00000181324"; transcript_name "AC132586.1-201"; transcript_source "ensembl"; tss_id "TSS2736"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3111905 3111950 . - . exon_id "ENSMUSE00001174352"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097866"; gene_name "AC132586.1"; gene_source "ensembl"; p_id "P31164"; transcript_id "ENSMUST00000181324"; transcript_name "AC132586.1-201"; transcript_source "ensembl"; tss_id "TSS2736"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3154504 3155948 . - . exon_id "ENSMUSE00001199160"; exon_number "12"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097916"; gene_name "AU018091"; gene_source "ensembl"; p_id "P9551"; transcript_id "ENSMUST00000181669"; transcript_name "AU018091-202"; transcript_source "ensembl"; tss_id "TSS44497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3156106 3156214 . - . exon_id "ENSMUSE00001172334"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097916"; gene_name "AU018091"; gene_source "ensembl"; p_id "P9551"; transcript_id "ENSMUST00000181669"; transcript_name "AU018091-202"; transcript_source "ensembl"; tss_id "TSS44497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3157745 3157911 . - . exon_id "ENSMUSE00001191027"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097916"; gene_name "AU018091"; gene_source "ensembl"; p_id "P9551"; transcript_id "ENSMUST00000181669"; transcript_name "AU018091-202"; transcript_source "ensembl"; tss_id "TSS44497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3158058 3158269 . - . exon_id "ENSMUSE00001107367"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097916"; gene_name "AU018091"; gene_source "ensembl"; p_id "P9551"; transcript_id "ENSMUST00000181669"; transcript_name "AU018091-202"; transcript_source "ensembl"; tss_id "TSS44497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3158395 3158497 . - . exon_id "ENSMUSE00001180885"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097916"; gene_name "AU018091"; gene_source "ensembl"; p_id "P9551"; transcript_id "ENSMUST00000181669"; transcript_name "AU018091-202"; transcript_source "ensembl"; tss_id "TSS44497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3158595 3158734 . - . exon_id "ENSMUSE00001146127"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097916"; gene_name "AU018091"; gene_source "ensembl"; p_id "P9551"; transcript_id "ENSMUST00000181669"; transcript_name "AU018091-202"; transcript_source "ensembl"; tss_id "TSS44497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3158892 3159114 . - . exon_id "ENSMUSE00001106474"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097916"; gene_name "AU018091"; gene_source "ensembl"; p_id "P9551"; transcript_id "ENSMUST00000181669"; transcript_name "AU018091-202"; transcript_source "ensembl"; tss_id "TSS44497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3159269 3159381 . - . exon_id "ENSMUSE00001177052"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097916"; gene_name "AU018091"; gene_source "ensembl"; p_id "P9551"; transcript_id "ENSMUST00000181669"; transcript_name "AU018091-202"; transcript_source "ensembl"; tss_id "TSS44497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3161071 3161248 . - . exon_id "ENSMUSE00001110792"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097916"; gene_name "AU018091"; gene_source "ensembl"; p_id "P9551"; transcript_id "ENSMUST00000181669"; transcript_name "AU018091-202"; transcript_source "ensembl"; tss_id "TSS44497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3162042 3162200 . - . exon_id "ENSMUSE00001198191"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097916"; gene_name "AU018091"; gene_source "ensembl"; p_id "P9551"; transcript_id "ENSMUST00000181669"; transcript_name "AU018091-202"; transcript_source "ensembl"; tss_id "TSS44497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3163723 3164127 . - . exon_id "ENSMUSE00001164380"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097916"; gene_name "AU018091"; gene_source "ensembl"; p_id "P9551"; transcript_id "ENSMUST00000181669"; transcript_name "AU018091-202"; transcript_source "ensembl"; tss_id "TSS44497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3168841 3169029 . - . exon_id "ENSMUSE00001118329"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097916"; gene_name "AU018091"; gene_source "ensembl"; p_id "P9551"; transcript_id "ENSMUST00000181669"; transcript_name "AU018091-202"; transcript_source "ensembl"; tss_id "TSS44497"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3180825 3181085 . + . exon_id "ENSMUSE00001317844"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098584"; gene_name "AC245272.2"; gene_source "ensembl"; p_id "P12642"; transcript_id "ENSMUST00000183617"; transcript_name "AC245272.2-201"; transcript_source "ensembl"; tss_id "TSS68588"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH miRNA exon 3181076 3181184 . + . exon_id "ENSMUSE00001316792"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000099121"; gene_name "AC245272.3"; gene_source "ensembl"; transcript_id "ENSMUST00000184190"; transcript_name "AC245272.3-201"; transcript_source "ensembl"; tss_id "TSS65741"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3181347 3181498 . + . exon_id "ENSMUSE00001314302"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098584"; gene_name "AC245272.2"; gene_source "ensembl"; p_id "P12642"; transcript_id "ENSMUST00000183617"; transcript_name "AC245272.2-201"; transcript_source "ensembl"; tss_id "TSS68588"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3181502 3181707 . + . exon_id "ENSMUSE00001315353"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098584"; gene_name "AC245272.2"; gene_source "ensembl"; p_id "P12642"; transcript_id "ENSMUST00000183617"; transcript_name "AC245272.2-201"; transcript_source "ensembl"; tss_id "TSS68588"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH miRNA exon 3217300 3217382 . + . exon_id "ENSMUSE00001197193"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000097826"; gene_name "mmu-mir-290b"; gene_source "ensembl"; transcript_id "ENSMUST00000181293"; transcript_name "mmu-mir-290b.1-201"; transcript_source "ensembl"; tss_id "TSS59526"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH miRNA exon 3217593 3217674 . + . exon_id "ENSMUSE00001112220"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000096925"; gene_name "mmu-mir-291a"; gene_source "ensembl"; transcript_id "ENSMUST00000180747"; transcript_name "mmu-mir-291a.1-201"; transcript_source "ensembl"; tss_id "TSS6095"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH miRNA exon 3217863 3217944 . + . exon_id "ENSMUSE00001144208"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000097782"; gene_name "mmu-mir-292b"; gene_source "ensembl"; transcript_id "ENSMUST00000181789"; transcript_name "mmu-mir-292b.1-201"; transcript_source "ensembl"; tss_id "TSS26221"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH miRNA exon 3218156 3218234 . + . exon_id "ENSMUSE00001105203"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000097568"; gene_name "mmu-mir-291b"; gene_source "ensembl"; transcript_id "ENSMUST00000180985"; transcript_name "mmu-mir-291b.1-201"; transcript_source "ensembl"; tss_id "TSS70847"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH miRNA exon 3219017 3219096 . + . exon_id "ENSMUSE00001150267"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000097688"; gene_name "mmu-mir-293"; gene_source "ensembl"; transcript_id "ENSMUST00000181340"; transcript_name "mmu-mir-293.1-201"; transcript_source "ensembl"; tss_id "TSS27441"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH miRNA exon 3219315 3219398 . + . exon_id "ENSMUSE00001146285"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000097034"; gene_name "mmu-mir-294"; gene_source "ensembl"; transcript_id "ENSMUST00000181135"; transcript_name "mmu-mir-294.1-201"; transcript_source "ensembl"; tss_id "TSS12652"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH miRNA exon 3219447 3219515 . + . exon_id "ENSMUSE00001168199"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000097400"; gene_name "mmu-mir-295"; gene_source "ensembl"; transcript_id "ENSMUST00000181471"; transcript_name "mmu-mir-295.1-201"; transcript_source "ensembl"; tss_id "TSS18594"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3220184 3221234 . - . exon_id "ENSMUSE00001193463"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097297"; gene_name "NLRP12"; gene_source "ensembl"; p_id "P8463"; transcript_id "ENSMUST00000181320"; transcript_name "NLRP12-201"; transcript_source "ensembl"; tss_id "TSS77655"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3223878 3224048 . - . exon_id "ENSMUSE00001114026"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097297"; gene_name "NLRP12"; gene_source "ensembl"; p_id "P8463"; transcript_id "ENSMUST00000181320"; transcript_name "NLRP12-201"; transcript_source "ensembl"; tss_id "TSS77655"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3227022 3227192 . - . exon_id "ENSMUSE00001168607"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097297"; gene_name "NLRP12"; gene_source "ensembl"; p_id "P8463"; transcript_id "ENSMUST00000181320"; transcript_name "NLRP12-201"; transcript_source "ensembl"; tss_id "TSS77655"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3229600 3229770 . - . exon_id "ENSMUSE00001146330"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097297"; gene_name "NLRP12"; gene_source "ensembl"; p_id "P8463"; transcript_id "ENSMUST00000181320"; transcript_name "NLRP12-201"; transcript_source "ensembl"; tss_id "TSS77655"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3231717 3231887 . - . exon_id "ENSMUSE00001124067"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097297"; gene_name "NLRP12"; gene_source "ensembl"; p_id "P8463"; transcript_id "ENSMUST00000181320"; transcript_name "NLRP12-201"; transcript_source "ensembl"; tss_id "TSS77655"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3232505 3232675 . - . exon_id "ENSMUSE00001183554"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097297"; gene_name "NLRP12"; gene_source "ensembl"; p_id "P8463"; transcript_id "ENSMUST00000181320"; transcript_name "NLRP12-201"; transcript_source "ensembl"; tss_id "TSS77655"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3233784 3233954 . - . exon_id "ENSMUSE00001168048"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097297"; gene_name "NLRP12"; gene_source "ensembl"; p_id "P8463"; transcript_id "ENSMUST00000181320"; transcript_name "NLRP12-201"; transcript_source "ensembl"; tss_id "TSS77655"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3238460 3240140 . - . exon_id "ENSMUSE00001200791"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097297"; gene_name "NLRP12"; gene_source "ensembl"; p_id "P8463"; transcript_id "ENSMUST00000181320"; transcript_name "NLRP12-201"; transcript_source "ensembl"; tss_id "TSS77655"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3243959 3244039 . - . exon_id "ENSMUSE00001196073"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097297"; gene_name "NLRP12"; gene_source "ensembl"; p_id "P8463"; transcript_id "ENSMUST00000181320"; transcript_name "NLRP12-201"; transcript_source "ensembl"; tss_id "TSS77655"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3247881 3248370 . - . exon_id "ENSMUSE00001137896"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097297"; gene_name "NLRP12"; gene_source "ensembl"; p_id "P8463"; transcript_id "ENSMUST00000181320"; transcript_name "NLRP12-201"; transcript_source "ensembl"; tss_id "TSS77655"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH pseudogene exon 3283157 3283588 . - . exon_id "ENSMUSE00001181193"; exon_number "3"; gene_biotype "pseudogene"; gene_id "ENSMUSG00000097607"; gene_name "AC245272.1"; gene_source "ensembl"; transcript_id "ENSMUST00000181505"; transcript_name "AC245272.1-201"; transcript_source "ensembl"; tss_id "TSS80018"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH pseudogene exon 3283591 3283617 . - . exon_id "ENSMUSE00001186728"; exon_number "2"; gene_biotype "pseudogene"; gene_id "ENSMUSG00000097607"; gene_name "AC245272.1"; gene_source "ensembl"; transcript_id "ENSMUST00000181505"; transcript_name "AC245272.1-201"; transcript_source "ensembl"; tss_id "TSS80018"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH pseudogene exon 3283619 3284038 . - . exon_id "ENSMUSE00001142850"; exon_number "1"; gene_biotype "pseudogene"; gene_id "ENSMUSG00000097607"; gene_name "AC245272.1"; gene_source "ensembl"; transcript_id "ENSMUST00000181505"; transcript_name "AC245272.1-201"; transcript_source "ensembl"; tss_id "TSS80018"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3289100 3289317 . + . exon_id "ENSMUSE00001166183"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097829"; gene_name "MYADM"; gene_source "ensembl"; p_id "P21734"; transcript_id "ENSMUST00000180998"; transcript_name "MYADM-201"; transcript_source "ensembl"; tss_id "TSS78262"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3291728 3291815 . + . exon_id "ENSMUSE00001147753"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097829"; gene_name "MYADM"; gene_source "ensembl"; p_id "P21734"; transcript_id "ENSMUST00000180998"; transcript_name "MYADM-201"; transcript_source "ensembl"; tss_id "TSS78262"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3295238 3298942 . + . exon_id "ENSMUSE00001119410"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097829"; gene_name "MYADM"; gene_source "ensembl"; p_id "P21734"; transcript_id "ENSMUST00000180998"; transcript_name "MYADM-201"; transcript_source "ensembl"; tss_id "TSS78262"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3302048 3302475 . + . exon_id "ENSMUSE00001162485"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P45477"; transcript_id "ENSMUST00000181455"; transcript_name "PRKCC-202"; transcript_source "ensembl"; tss_id "TSS40613"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3302161 3302475 . + . exon_id "ENSMUSE00001103491"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P17004"; transcript_id "ENSMUST00000181221"; transcript_name "PRKCC-201"; transcript_source "ensembl"; tss_id "TSS13949"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3302822 3302853 . + . exon_id "ENSMUSE00001159356"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P45477"; transcript_id "ENSMUST00000181455"; transcript_name "PRKCC-202"; transcript_source "ensembl"; tss_id "TSS40613"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3302822 3302853 . + . exon_id "ENSMUSE00001159356"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P17004"; transcript_id "ENSMUST00000181221"; transcript_name "PRKCC-201"; transcript_source "ensembl"; tss_id "TSS13949"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3303860 3303942 . + . exon_id "ENSMUSE00001170569"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P45477"; transcript_id "ENSMUST00000181455"; transcript_name "PRKCC-202"; transcript_source "ensembl"; tss_id "TSS40613"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3303860 3303942 . + . exon_id "ENSMUSE00001170569"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P17004"; transcript_id "ENSMUST00000181221"; transcript_name "PRKCC-201"; transcript_source "ensembl"; tss_id "TSS13949"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3309080 3309191 . + . exon_id "ENSMUSE00001135944"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P45477"; transcript_id "ENSMUST00000181455"; transcript_name "PRKCC-202"; transcript_source "ensembl"; tss_id "TSS40613"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3309080 3309191 . + . exon_id "ENSMUSE00001135944"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P17004"; transcript_id "ENSMUST00000181221"; transcript_name "PRKCC-201"; transcript_source "ensembl"; tss_id "TSS13949"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3309352 3309483 . + . exon_id "ENSMUSE00001192824"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P45477"; transcript_id "ENSMUST00000181455"; transcript_name "PRKCC-202"; transcript_source "ensembl"; tss_id "TSS40613"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3309352 3309483 . + . exon_id "ENSMUSE00001192824"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P17004"; transcript_id "ENSMUST00000181221"; transcript_name "PRKCC-201"; transcript_source "ensembl"; tss_id "TSS13949"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3310905 3311061 . + . exon_id "ENSMUSE00001148601"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P45477"; transcript_id "ENSMUST00000181455"; transcript_name "PRKCC-202"; transcript_source "ensembl"; tss_id "TSS40613"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3310905 3311061 . + . exon_id "ENSMUSE00001148601"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P17004"; transcript_id "ENSMUST00000181221"; transcript_name "PRKCC-201"; transcript_source "ensembl"; tss_id "TSS13949"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3312214 3312348 . + . exon_id "ENSMUSE00001146476"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P45477"; transcript_id "ENSMUST00000181455"; transcript_name "PRKCC-202"; transcript_source "ensembl"; tss_id "TSS40613"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3312214 3312348 . + . exon_id "ENSMUSE00001146476"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P17004"; transcript_id "ENSMUST00000181221"; transcript_name "PRKCC-201"; transcript_source "ensembl"; tss_id "TSS13949"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3312649 3312736 . + . exon_id "ENSMUSE00001108157"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P45477"; transcript_id "ENSMUST00000181455"; transcript_name "PRKCC-202"; transcript_source "ensembl"; tss_id "TSS40613"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3312649 3312736 . + . exon_id "ENSMUSE00001108157"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P17004"; transcript_id "ENSMUST00000181221"; transcript_name "PRKCC-201"; transcript_source "ensembl"; tss_id "TSS13949"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3313028 3313057 . + . exon_id "ENSMUSE00001147857"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P45477"; transcript_id "ENSMUST00000181455"; transcript_name "PRKCC-202"; transcript_source "ensembl"; tss_id "TSS40613"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3313028 3313057 . + . exon_id "ENSMUSE00001147857"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P17004"; transcript_id "ENSMUST00000181221"; transcript_name "PRKCC-201"; transcript_source "ensembl"; tss_id "TSS13949"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3317376 3317528 . + . exon_id "ENSMUSE00001166302"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P45477"; transcript_id "ENSMUST00000181455"; transcript_name "PRKCC-202"; transcript_source "ensembl"; tss_id "TSS40613"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3318047 3318235 . + . exon_id "ENSMUSE00001149576"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P45477"; transcript_id "ENSMUST00000181455"; transcript_name "PRKCC-202"; transcript_source "ensembl"; tss_id "TSS40613"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3318047 3318235 . + . exon_id "ENSMUSE00001149576"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P17004"; transcript_id "ENSMUST00000181221"; transcript_name "PRKCC-201"; transcript_source "ensembl"; tss_id "TSS13949"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3320856 3320947 . + . exon_id "ENSMUSE00001107726"; exon_number "12"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P45477"; transcript_id "ENSMUST00000181455"; transcript_name "PRKCC-202"; transcript_source "ensembl"; tss_id "TSS40613"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3320856 3320947 . + . exon_id "ENSMUSE00001107726"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P17004"; transcript_id "ENSMUST00000181221"; transcript_name "PRKCC-201"; transcript_source "ensembl"; tss_id "TSS13949"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3321033 3321095 . + . exon_id "ENSMUSE00001115394"; exon_number "13"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P45477"; transcript_id "ENSMUST00000181455"; transcript_name "PRKCC-202"; transcript_source "ensembl"; tss_id "TSS40613"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3321033 3321095 . + . exon_id "ENSMUSE00001115394"; exon_number "12"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P17004"; transcript_id "ENSMUST00000181221"; transcript_name "PRKCC-201"; transcript_source "ensembl"; tss_id "TSS13949"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3321972 3322110 . + . exon_id "ENSMUSE00001123953"; exon_number "14"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P45477"; transcript_id "ENSMUST00000181455"; transcript_name "PRKCC-202"; transcript_source "ensembl"; tss_id "TSS40613"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3321972 3322110 . + . exon_id "ENSMUSE00001123953"; exon_number "13"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P17004"; transcript_id "ENSMUST00000181221"; transcript_name "PRKCC-201"; transcript_source "ensembl"; tss_id "TSS13949"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3325932 3326012 . + . exon_id "ENSMUSE00001181540"; exon_number "15"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P45477"; transcript_id "ENSMUST00000181455"; transcript_name "PRKCC-202"; transcript_source "ensembl"; tss_id "TSS40613"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3325932 3326012 . + . exon_id "ENSMUSE00001181540"; exon_number "14"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P17004"; transcript_id "ENSMUST00000181221"; transcript_name "PRKCC-201"; transcript_source "ensembl"; tss_id "TSS13949"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3327551 3327658 . + . exon_id "ENSMUSE00001123248"; exon_number "16"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P45477"; transcript_id "ENSMUST00000181455"; transcript_name "PRKCC-202"; transcript_source "ensembl"; tss_id "TSS40613"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3327551 3327658 . + . exon_id "ENSMUSE00001123248"; exon_number "15"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P17004"; transcript_id "ENSMUST00000181221"; transcript_name "PRKCC-201"; transcript_source "ensembl"; tss_id "TSS13949"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3328344 3328484 . + . exon_id "ENSMUSE00001138148"; exon_number "17"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P45477"; transcript_id "ENSMUST00000181455"; transcript_name "PRKCC-202"; transcript_source "ensembl"; tss_id "TSS40613"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3328344 3328484 . + . exon_id "ENSMUSE00001138148"; exon_number "16"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P17004"; transcript_id "ENSMUST00000181221"; transcript_name "PRKCC-201"; transcript_source "ensembl"; tss_id "TSS13949"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3328662 3328883 . + . exon_id "ENSMUSE00001193798"; exon_number "17"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P17004"; transcript_id "ENSMUST00000181221"; transcript_name "PRKCC-201"; transcript_source "ensembl"; tss_id "TSS13949"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3328662 3329610 . + . exon_id "ENSMUSE00001160483"; exon_number "18"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097449"; gene_name "PRKCC"; gene_source "ensembl"; p_id "P45477"; transcript_id "ENSMUST00000181455"; transcript_name "PRKCC-202"; transcript_source "ensembl"; tss_id "TSS40613"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3331471 3331552 . + . exon_id "ENSMUSE00001168286"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096998"; gene_name "CACNG7"; gene_source "ensembl"; p_id "P20714"; transcript_id "ENSMUST00000181686"; transcript_name "CACNG7-201"; transcript_source "ensembl"; tss_id "TSS79541"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3335072 3335296 . + . exon_id "ENSMUSE00001149681"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096998"; gene_name "CACNG7"; gene_source "ensembl"; p_id "P20714"; transcript_id "ENSMUST00000181686"; transcript_name "CACNG7-201"; transcript_source "ensembl"; tss_id "TSS79541"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3336961 3337047 . + . exon_id "ENSMUSE00001196980"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096998"; gene_name "CACNG7"; gene_source "ensembl"; p_id "P20714"; transcript_id "ENSMUST00000181686"; transcript_name "CACNG7-201"; transcript_source "ensembl"; tss_id "TSS79541"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3337402 3337542 . + . exon_id "ENSMUSE00001124841"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096998"; gene_name "CACNG7"; gene_source "ensembl"; p_id "P20714"; transcript_id "ENSMUST00000181686"; transcript_name "CACNG7-201"; transcript_source "ensembl"; tss_id "TSS79541"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3364463 3364608 . + . exon_id "ENSMUSE00001137665"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096998"; gene_name "CACNG7"; gene_source "ensembl"; p_id "P20714"; transcript_id "ENSMUST00000181686"; transcript_name "CACNG7-201"; transcript_source "ensembl"; tss_id "TSS79541"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3365207 3366732 . + . exon_id "ENSMUSE00001106282"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096998"; gene_name "CACNG7"; gene_source "ensembl"; p_id "P20714"; transcript_id "ENSMUST00000181686"; transcript_name "CACNG7-201"; transcript_source "ensembl"; tss_id "TSS79541"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3389199 3389486 . + . exon_id "ENSMUSE00001207313"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097492"; gene_name "Cacng8"; gene_source "ensembl_havana"; p_id "P45775"; transcript_id "ENSMUST00000182455"; transcript_name "Cacng8-001"; transcript_source "havana"; tss_id "TSS77274"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3389771 3389881 . + . exon_id "ENSMUSE00001288513"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097492"; gene_name "Cacng8"; gene_source "ensembl_havana"; p_id "P45775"; transcript_id "ENSMUST00000182455"; transcript_name "Cacng8-001"; transcript_source "havana"; tss_id "TSS77274"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3392558 3393020 . + . exon_id "ENSMUSE00001258581"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097492"; gene_name "Cacng8"; gene_source "ensembl_havana"; p_id "P45775"; transcript_id "ENSMUST00000182455"; transcript_name "Cacng8-001"; transcript_source "havana"; tss_id "TSS77274"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3392633 3393020 . + . exon_id "ENSMUSE00001183270"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097492"; gene_name "Cacng8"; gene_source "ensembl_havana"; p_id "P45775"; transcript_id "ENSMUST00000181477"; transcript_name "Cacng8-201"; transcript_source "ensembl"; tss_id "TSS36619"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3409691 3409774 . + . exon_id "ENSMUSE00001124425"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097492"; gene_name "Cacng8"; gene_source "ensembl_havana"; p_id "P45775"; transcript_id "ENSMUST00000181477"; transcript_name "Cacng8-201"; transcript_source "ensembl"; tss_id "TSS36619"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3409691 3409774 . + . exon_id "ENSMUSE00001124425"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097492"; gene_name "Cacng8"; gene_source "ensembl_havana"; p_id "P45775"; transcript_id "ENSMUST00000182455"; transcript_name "Cacng8-001"; transcript_source "havana"; tss_id "TSS77274"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3410583 3410723 . + . exon_id "ENSMUSE00001143487"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097492"; gene_name "Cacng8"; gene_source "ensembl_havana"; p_id "P45775"; transcript_id "ENSMUST00000181477"; transcript_name "Cacng8-201"; transcript_source "ensembl"; tss_id "TSS36619"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3410583 3410723 . + . exon_id "ENSMUSE00001143487"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097492"; gene_name "Cacng8"; gene_source "ensembl_havana"; p_id "P45775"; transcript_id "ENSMUST00000182455"; transcript_name "Cacng8-001"; transcript_source "havana"; tss_id "TSS77274"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3413355 3414121 . + . exon_id "ENSMUSE00001107654"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097492"; gene_name "Cacng8"; gene_source "ensembl_havana"; p_id "P45775"; transcript_id "ENSMUST00000181477"; transcript_name "Cacng8-201"; transcript_source "ensembl"; tss_id "TSS36619"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3413355 3414164 . + . exon_id "ENSMUSE00001243143"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097492"; gene_name "Cacng8"; gene_source "ensembl_havana"; p_id "P45775"; transcript_id "ENSMUST00000182455"; transcript_name "Cacng8-001"; transcript_source "havana"; tss_id "TSS77274"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH miRNA exon 3413582 3413672 . + . exon_id "ENSMUSE00001153202"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000097499"; gene_name "AC217111.1"; gene_source "ensembl"; transcript_id "ENSMUST00000181785"; transcript_name "AC217111.1-201"; transcript_source "ensembl"; tss_id "TSS14775"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3422711 3423508 . + . exon_id "ENSMUSE00001247717"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097894"; gene_name "CACNG6"; gene_source "ensembl_havana"; p_id "P28132"; transcript_id "ENSMUST00000182493"; transcript_name "CACNG6-001"; transcript_source "ensembl_havana"; tss_id "TSS54302"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3423178 3423508 . + . exon_id "ENSMUSE00001194237"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097894"; gene_name "CACNG6"; gene_source "ensembl_havana"; p_id "P46647"; transcript_id "ENSMUST00000180916"; transcript_name "CACNG6-002"; transcript_source "havana"; tss_id "TSS70945"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3428954 3429028 . + . exon_id "ENSMUSE00001108839"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097894"; gene_name "CACNG6"; gene_source "ensembl_havana"; p_id "P46647"; transcript_id "ENSMUST00000180916"; transcript_name "CACNG6-002"; transcript_source "havana"; tss_id "TSS70945"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3428954 3429028 . + . exon_id "ENSMUSE00001108839"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097894"; gene_name "CACNG6"; gene_source "ensembl_havana"; p_id "P28132"; transcript_id "ENSMUST00000182493"; transcript_name "CACNG6-001"; transcript_source "ensembl_havana"; tss_id "TSS54302"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3430335 3430472 . + . exon_id "ENSMUSE00001154516"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097894"; gene_name "CACNG6"; gene_source "ensembl_havana"; p_id "P28132"; transcript_id "ENSMUST00000182493"; transcript_name "CACNG6-001"; transcript_source "ensembl_havana"; tss_id "TSS54302"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3433218 3433679 . + . exon_id "ENSMUSE00001183703"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097894"; gene_name "CACNG6"; gene_source "ensembl_havana"; p_id "P46647"; transcript_id "ENSMUST00000180916"; transcript_name "CACNG6-002"; transcript_source "havana"; tss_id "TSS70945"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4151_PATCH' not found in Genome fasta files for line: MG4151_PATCH protein_coding exon 3433218 3434183 . + . exon_id "ENSMUSE00001229828"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097894"; gene_name "CACNG6"; gene_source "ensembl_havana"; p_id "P28132"; transcript_id "ENSMUST00000182493"; transcript_name "CACNG6-001"; transcript_source "ensembl_havana"; tss_id "TSS54302"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH retained_intron exon 109452823 109453294 . + . exon_id "ENSMUSE00001316194"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184768"; transcript_name "DLK1-007"; transcript_source "havana"; tss_id "TSS78242"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109452849 109453294 . + . exon_id "ENSMUSE00001317973"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P41123"; transcript_id "ENSMUST00000183367"; transcript_name "DLK1-001"; transcript_source "havana"; tss_id "TSS41408"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109453455 109453726 . + . exon_id "ENSMUSE00001315506"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P41123"; transcript_id "ENSMUST00000183925"; transcript_name "DLK1-002"; transcript_source "ensembl_havana"; tss_id "TSS50565"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109453455 109453726 . + . exon_id "ENSMUSE00001314641"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099116"; gene_name "DLK1"; gene_source "ensembl"; p_id "P41123"; transcript_id "ENSMUST00000183958"; transcript_name "DLK1-201"; transcript_source "ensembl"; tss_id "TSS50565"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109453491 109453726 . + . exon_id "ENSMUSE00001316803"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P11559"; transcript_id "ENSMUST00000184240"; transcript_name "DLK1-008"; transcript_source "havana"; tss_id "TSS73183"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109453491 109453726 . + . exon_id "ENSMUSE00001316803"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P41059"; transcript_id "ENSMUST00000183988"; transcript_name "DLK1-003"; transcript_source "ensembl_havana"; tss_id "TSS73183"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109453535 109453726 . + . exon_id "ENSMUSE00001317832"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P19538"; transcript_id "ENSMUST00000183383"; transcript_name "DLK1-005"; transcript_source "ensembl_havana"; tss_id "TSS36870"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109453587 109453726 . + . exon_id "ENSMUSE00001314899"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P41123"; transcript_id "ENSMUST00000183367"; transcript_name "DLK1-001"; transcript_source "havana"; tss_id "TSS41408"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH retained_intron exon 109453587 109453782 . + . exon_id "ENSMUSE00001316928"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; transcript_id "ENSMUST00000184768"; transcript_name "DLK1-007"; transcript_source "havana"; tss_id "TSS78242"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109453655 109453726 . + . exon_id "ENSMUSE00001315976"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P18777"; transcript_id "ENSMUST00000184132"; transcript_name "DLK1-004"; transcript_source "havana"; tss_id "TSS77649"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109453660 109453726 . + . exon_id "ENSMUSE00001317524"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P26204"; transcript_id "ENSMUST00000184736"; transcript_name "DLK1-010"; transcript_source "havana"; tss_id "TSS28502"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109454195 109455048 . + . exon_id "ENSMUSE00001314047"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P14177"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000183373"; transcript_name "DLK1-006"; transcript_source "havana"; tss_id "TSS16524"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109454985 109455048 . + . exon_id "ENSMUSE00001314556"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P41123"; transcript_id "ENSMUST00000183925"; transcript_name "DLK1-002"; transcript_source "ensembl_havana"; tss_id "TSS50565"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109454985 109455048 . + . exon_id "ENSMUSE00001314556"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P11559"; transcript_id "ENSMUST00000184240"; transcript_name "DLK1-008"; transcript_source "havana"; tss_id "TSS73183"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109454985 109455048 . + . exon_id "ENSMUSE00001314556"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P41059"; transcript_id "ENSMUST00000183988"; transcript_name "DLK1-003"; transcript_source "ensembl_havana"; tss_id "TSS73183"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109454985 109455048 . + . exon_id "ENSMUSE00001314556"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P19538"; transcript_id "ENSMUST00000183383"; transcript_name "DLK1-005"; transcript_source "ensembl_havana"; tss_id "TSS36870"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109454985 109455048 . + . exon_id "ENSMUSE00001314556"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P26204"; transcript_id "ENSMUST00000184736"; transcript_name "DLK1-010"; transcript_source "havana"; tss_id "TSS28502"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109454985 109455048 . + . exon_id "ENSMUSE00001314556"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P41123"; transcript_id "ENSMUST00000183367"; transcript_name "DLK1-001"; transcript_source "havana"; tss_id "TSS41408"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109454985 109455048 . + . exon_id "ENSMUSE00001314556"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P18777"; transcript_id "ENSMUST00000184132"; transcript_name "DLK1-004"; transcript_source "havana"; tss_id "TSS77649"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109454985 109455048 . + . exon_id "ENSMUSE00001317371"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099116"; gene_name "DLK1"; gene_source "ensembl"; p_id "P41123"; transcript_id "ENSMUST00000183958"; transcript_name "DLK1-201"; transcript_source "ensembl"; tss_id "TSS50565"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109455493 109455623 . + . exon_id "ENSMUSE00001315299"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P41123"; transcript_id "ENSMUST00000183925"; transcript_name "DLK1-002"; transcript_source "ensembl_havana"; tss_id "TSS50565"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109455493 109455623 . + . exon_id "ENSMUSE00001315299"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P14177"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000183373"; transcript_name "DLK1-006"; transcript_source "havana"; tss_id "TSS16524"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109455493 109455623 . + . exon_id "ENSMUSE00001315299"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P11559"; transcript_id "ENSMUST00000184240"; transcript_name "DLK1-008"; transcript_source "havana"; tss_id "TSS73183"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109455493 109455623 . + . exon_id "ENSMUSE00001315299"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P41059"; transcript_id "ENSMUST00000183988"; transcript_name "DLK1-003"; transcript_source "ensembl_havana"; tss_id "TSS73183"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109455493 109455623 . + . exon_id "ENSMUSE00001315299"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P19538"; transcript_id "ENSMUST00000183383"; transcript_name "DLK1-005"; transcript_source "ensembl_havana"; tss_id "TSS36870"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109455493 109455623 . + . exon_id "ENSMUSE00001315299"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P26204"; transcript_id "ENSMUST00000184736"; transcript_name "DLK1-010"; transcript_source "havana"; tss_id "TSS28502"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109455493 109455623 . + . exon_id "ENSMUSE00001315299"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P41123"; transcript_id "ENSMUST00000183367"; transcript_name "DLK1-001"; transcript_source "havana"; tss_id "TSS41408"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109455493 109455623 . + . exon_id "ENSMUSE00001315299"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P18777"; transcript_id "ENSMUST00000184132"; transcript_name "DLK1-004"; transcript_source "havana"; tss_id "TSS77649"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109455493 109455623 . + . exon_id "ENSMUSE00001316192"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099116"; gene_name "DLK1"; gene_source "ensembl"; p_id "P41123"; transcript_id "ENSMUST00000183958"; transcript_name "DLK1-201"; transcript_source "ensembl"; tss_id "TSS50565"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109458074 109458215 . + . exon_id "ENSMUSE00001316631"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P41123"; transcript_id "ENSMUST00000183925"; transcript_name "DLK1-002"; transcript_source "ensembl_havana"; tss_id "TSS50565"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109458074 109458215 . + . exon_id "ENSMUSE00001316631"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P14177"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000183373"; transcript_name "DLK1-006"; transcript_source "havana"; tss_id "TSS16524"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109458074 109458215 . + . exon_id "ENSMUSE00001316631"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P11559"; transcript_id "ENSMUST00000184240"; transcript_name "DLK1-008"; transcript_source "havana"; tss_id "TSS73183"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109458074 109458215 . + . exon_id "ENSMUSE00001316631"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P41059"; transcript_id "ENSMUST00000183988"; transcript_name "DLK1-003"; transcript_source "ensembl_havana"; tss_id "TSS73183"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109458074 109458215 . + . exon_id "ENSMUSE00001316631"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P19538"; transcript_id "ENSMUST00000183383"; transcript_name "DLK1-005"; transcript_source "ensembl_havana"; tss_id "TSS36870"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109458074 109458215 . + . exon_id "ENSMUSE00001316631"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P26204"; transcript_id "ENSMUST00000184736"; transcript_name "DLK1-010"; transcript_source "havana"; tss_id "TSS28502"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109458074 109458215 . + . exon_id "ENSMUSE00001316631"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P41123"; transcript_id "ENSMUST00000183367"; transcript_name "DLK1-001"; transcript_source "havana"; tss_id "TSS41408"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109458074 109458215 . + . exon_id "ENSMUSE00001316631"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P18777"; transcript_id "ENSMUST00000184132"; transcript_name "DLK1-004"; transcript_source "havana"; tss_id "TSS77649"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109458074 109458215 . + . exon_id "ENSMUSE00001317132"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099116"; gene_name "DLK1"; gene_source "ensembl"; p_id "P41123"; transcript_id "ENSMUST00000183958"; transcript_name "DLK1-201"; transcript_source "ensembl"; tss_id "TSS50565"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109459607 109459762 . + . exon_id "ENSMUSE00001317153"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P14177"; tag "mRNA_end_NF"; transcript_id "ENSMUST00000183373"; transcript_name "DLK1-006"; transcript_source "havana"; tss_id "TSS16524"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109459607 109459832 . + . exon_id "ENSMUSE00001316702"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P41059"; transcript_id "ENSMUST00000183988"; transcript_name "DLK1-003"; transcript_source "ensembl_havana"; tss_id "TSS73183"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109459607 109459832 . + . exon_id "ENSMUSE00001316702"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P26204"; transcript_id "ENSMUST00000184736"; transcript_name "DLK1-010"; transcript_source "havana"; tss_id "TSS28502"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109459607 109459892 . + . exon_id "ENSMUSE00001315445"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P11559"; transcript_id "ENSMUST00000184240"; transcript_name "DLK1-008"; transcript_source "havana"; tss_id "TSS73183"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109459607 109459892 . + . exon_id "ENSMUSE00001315445"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P19538"; transcript_id "ENSMUST00000183383"; transcript_name "DLK1-005"; transcript_source "ensembl_havana"; tss_id "TSS36870"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109459607 109459892 . + . exon_id "ENSMUSE00001315445"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P18777"; transcript_id "ENSMUST00000184132"; transcript_name "DLK1-004"; transcript_source "havana"; tss_id "TSS77649"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109459607 109460700 . + . exon_id "ENSMUSE00001313589"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P41123"; transcript_id "ENSMUST00000183925"; transcript_name "DLK1-002"; transcript_source "ensembl_havana"; tss_id "TSS50565"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109459607 109463336 . + . exon_id "ENSMUSE00001315330"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P41123"; transcript_id "ENSMUST00000183367"; transcript_name "DLK1-001"; transcript_source "havana"; tss_id "TSS41408"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109459607 109463336 . + . exon_id "ENSMUSE00001317600"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099116"; gene_name "DLK1"; gene_source "ensembl"; p_id "P41123"; transcript_id "ENSMUST00000183958"; transcript_name "DLK1-201"; transcript_source "ensembl"; tss_id "TSS50565"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109459843 109459892 . + . exon_id "ENSMUSE00001316446"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P18562"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000184683"; transcript_name "DLK1-009"; transcript_source "havana"; tss_id "TSS16464"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109460043 109460475 . + . exon_id "ENSMUSE00001315644"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P18562"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000184683"; transcript_name "DLK1-009"; transcript_source "havana"; tss_id "TSS16464"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109460046 109463336 . + . exon_id "ENSMUSE00001314834"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P19538"; transcript_id "ENSMUST00000183383"; transcript_name "DLK1-005"; transcript_source "ensembl_havana"; tss_id "TSS36870"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109460112 109460360 . + . exon_id "ENSMUSE00001316531"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P26204"; transcript_id "ENSMUST00000184736"; transcript_name "DLK1-010"; transcript_source "havana"; tss_id "TSS28502"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109460112 109460381 . + . exon_id "ENSMUSE00001314999"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P11559"; transcript_id "ENSMUST00000184240"; transcript_name "DLK1-008"; transcript_source "havana"; tss_id "TSS73183"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109460118 109460618 . + . exon_id "ENSMUSE00001317594"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P41059"; transcript_id "ENSMUST00000183988"; transcript_name "DLK1-003"; transcript_source "ensembl_havana"; tss_id "TSS73183"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109460118 109463336 . + . exon_id "ENSMUSE00001317745"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098411"; gene_name "DLK1"; gene_source "ensembl_havana"; p_id "P18777"; transcript_id "ENSMUST00000184132"; transcript_name "DLK1-004"; transcript_source "havana"; tss_id "TSS77649"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109546348 109546499 . + . exon_id "ENSMUSE00001314757"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098724"; gene_name "MEG3"; gene_source "ensembl"; p_id "P10719"; transcript_id "ENSMUST00000184292"; transcript_name "MEG3-201"; transcript_source "ensembl"; tss_id "TSS67265"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109549988 109550061 . + . exon_id "ENSMUSE00001315778"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098724"; gene_name "MEG3"; gene_source "ensembl"; p_id "P10719"; transcript_id "ENSMUST00000184292"; transcript_name "MEG3-201"; transcript_source "ensembl"; tss_id "TSS67265"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109550162 109550319 . + . exon_id "ENSMUSE00001314685"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098724"; gene_name "MEG3"; gene_source "ensembl"; p_id "P10719"; transcript_id "ENSMUST00000184292"; transcript_name "MEG3-201"; transcript_source "ensembl"; tss_id "TSS67265"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109558745 109558828 . + . exon_id "ENSMUSE00001314967"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098724"; gene_name "MEG3"; gene_source "ensembl"; p_id "P10719"; transcript_id "ENSMUST00000184292"; transcript_name "MEG3-201"; transcript_source "ensembl"; tss_id "TSS67265"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109568919 109569102 . + . exon_id "ENSMUSE00001313791"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098724"; gene_name "MEG3"; gene_source "ensembl"; p_id "P10719"; transcript_id "ENSMUST00000184292"; transcript_name "MEG3-201"; transcript_source "ensembl"; tss_id "TSS67265"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109569136 109569937 . - . exon_id "ENSMUSE00001314564"; exon_number "2"; gene_biotype "lincRNA"; gene_id "ENSMUSG00000098440"; gene_name "AC152063.1"; gene_source "ensembl"; transcript_id "ENSMUST00000183476"; transcript_name "AC152063.1-201"; transcript_source "ensembl"; tss_id "TSS46008"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109571806 109572231 . - . exon_id "ENSMUSE00001315322"; exon_number "1"; gene_biotype "lincRNA"; gene_id "ENSMUSG00000098440"; gene_name "AC152063.1"; gene_source "ensembl"; transcript_id "ENSMUST00000183476"; transcript_name "AC152063.1-201"; transcript_source "ensembl"; tss_id "TSS46008"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109571899 109572236 . + . exon_id "ENSMUSE00001316487"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098724"; gene_name "MEG3"; gene_source "ensembl"; p_id "P10719"; transcript_id "ENSMUST00000184292"; transcript_name "MEG3-201"; transcript_source "ensembl"; tss_id "TSS67265"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH miRNA exon 109572498 109572588 . + . exon_id "ENSMUSE00001313785"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000098324"; gene_name "mmu-mir-673"; gene_source "ensembl"; transcript_id "ENSMUST00000184307"; transcript_name "mmu-mir-673.1-201"; transcript_source "ensembl"; tss_id "TSS47800"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH miRNA exon 109580741 109580823 . + . exon_id "ENSMUSE00001314116"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000099327"; gene_name "mmu-mir-493"; gene_source "ensembl"; transcript_id "ENSMUST00000184304"; transcript_name "mmu-mir-493.1-201"; transcript_source "ensembl"; tss_id "TSS87075"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH miRNA exon 109586298 109586394 . + . exon_id "ENSMUSE00001315000"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000099194"; gene_name "mmu-mir-3544"; gene_source "ensembl"; transcript_id "ENSMUST00000184047"; transcript_name "mmu-mir-3544.1-201"; transcript_source "ensembl"; tss_id "TSS80860"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH miRNA exon 109586579 109586662 . + . exon_id "ENSMUSE00001317878"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000098806"; gene_name "mmu-mir-540"; gene_source "ensembl"; transcript_id "ENSMUST00000185161"; transcript_name "mmu-mir-540.1-201"; transcript_source "ensembl"; tss_id "TSS61687"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH miRNA exon 109586822 109586915 . + . exon_id "ENSMUSE00001315627"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000099048"; gene_name "mmu-mir-665"; gene_source "ensembl"; transcript_id "ENSMUST00000184551"; transcript_name "mmu-mir-665.1-201"; transcript_source "ensembl"; tss_id "TSS30644"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH miRNA exon 109588451 109588539 . + . exon_id "ENSMUSE00001316467"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000098746"; gene_name "mmu-mir-3070a"; gene_source "ensembl"; transcript_id "ENSMUST00000184927"; transcript_name "mmu-mir-3070a.1-201"; transcript_source "ensembl"; tss_id "TSS62339"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH miRNA exon 109589100 109589188 . + . exon_id "ENSMUSE00001316671"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000098450"; gene_name "mmu-mir-3070b"; gene_source "ensembl"; transcript_id "ENSMUST00000185064"; transcript_name "mmu-mir-3070b.1-201"; transcript_source "ensembl"; tss_id "TSS82077"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109589702 109595996 . - . exon_id "ENSMUSE00001315848"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098639"; gene_name "RTL1"; gene_source "ensembl"; p_id "P30932"; transcript_id "ENSMUST00000184423"; transcript_name "RTL1-201"; transcript_source "ensembl"; tss_id "TSS21105"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH miRNA exon 109590955 109591045 . + . exon_id "ENSMUSE00001315810"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000098321"; gene_name "mmu-mir-431"; gene_source "ensembl"; transcript_id "ENSMUST00000184116"; transcript_name "mmu-mir-431.1-201"; transcript_source "ensembl"; tss_id "TSS17083"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH miRNA exon 109592223 109592346 . + . exon_id "ENSMUSE00001316723"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000098576"; gene_name "mmu-mir-433"; gene_source "ensembl"; transcript_id "ENSMUST00000183961"; transcript_name "mmu-mir-433.1-201"; transcript_source "ensembl"; tss_id "TSS66653"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH miRNA exon 109593340 109593436 . + . exon_id "ENSMUSE00001317628"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000099044"; gene_name "mmu-mir-127"; gene_source "ensembl"; transcript_id "ENSMUST00000184610"; transcript_name "mmu-mir-127.2-201"; transcript_source "ensembl"; tss_id "TSS28566"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH miRNA exon 109595014 109595107 . + . exon_id "ENSMUSE00001314661"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000099171"; gene_name "mmu-mir-434"; gene_source "ensembl"; transcript_id "ENSMUST00000183896"; transcript_name "mmu-mir-434.2-201"; transcript_source "ensembl"; tss_id "TSS61956"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH miRNA exon 109595464 109595538 . + . exon_id "ENSMUSE00001317694"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000099231"; gene_name "mmu-mir-432"; gene_source "ensembl"; transcript_id "ENSMUST00000184800"; transcript_name "mmu-mir-432.2-201"; transcript_source "ensembl"; tss_id "TSS70758"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH miRNA exon 109595825 109595906 . + . exon_id "ENSMUSE00001316877"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000098913"; gene_name "mmu-mir-3071"; gene_source "ensembl"; transcript_id "ENSMUST00000184309"; transcript_name "mmu-mir-3071.2-201"; transcript_source "ensembl"; tss_id "TSS31442"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH protein_coding exon 109600777 109600838 . - . exon_id "ENSMUSE00001315343"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098639"; gene_name "RTL1"; gene_source "ensembl"; p_id "P30932"; transcript_id "ENSMUST00000184423"; transcript_name "RTL1-201"; transcript_source "ensembl"; tss_id "TSS21105"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH misc_RNA exon 109604390 109604487 . + . exon_id "ENSMUSE00001315560"; exon_number "1"; gene_biotype "misc_RNA"; gene_id "ENSMUSG00000099195"; gene_name "MEG8_1"; gene_source "ensembl"; transcript_id "ENSMUST00000183832"; transcript_name "MEG8_1.2-201"; transcript_source "ensembl"; tss_id "TSS35257"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109604448 109604574 . + . exon_id "ENSMUSE00001314808"; exon_number "1"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184723"; transcript_name "Rian-011"; transcript_source "havana"; tss_id "TSS21685"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109604453 109604574 . + . exon_id "ENSMUSE00001316421"; exon_number "1"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000183382"; transcript_name "Rian-010"; transcript_source "havana"; tss_id "TSS64054"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109604554 109604574 . + . exon_id "ENSMUSE00001313566"; exon_number "1"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184856"; transcript_name "Rian-012"; transcript_source "havana"; tss_id "TSS9385"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109606722 109606849 . + . exon_id "ENSMUSE00001315210"; exon_number "2"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000183382"; transcript_name "Rian-010"; transcript_source "havana"; tss_id "TSS64054"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109606722 109606851 . + . exon_id "ENSMUSE00001313560"; exon_number "2"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184723"; transcript_name "Rian-011"; transcript_source "havana"; tss_id "TSS21685"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109607922 109607993 . + . exon_id "ENSMUSE00001314940"; exon_number "3"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184723"; transcript_name "Rian-011"; transcript_source "havana"; tss_id "TSS21685"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109607922 109608004 . + . exon_id "ENSMUSE00001317675"; exon_number "2"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184856"; transcript_name "Rian-012"; transcript_source "havana"; tss_id "TSS9385"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH miRNA exon 109612008 109612103 . + . exon_id "ENSMUSE00001316091"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000099090"; gene_name "mmu-mir-341"; gene_source "ensembl"; transcript_id "ENSMUST00000184344"; transcript_name "mmu-mir-341.1-201"; transcript_source "ensembl"; tss_id "TSS7576"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH miRNA exon 109612330 109612449 . + . exon_id "ENSMUSE00001317295"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000098545"; gene_name "mmu-mir-1188"; gene_source "ensembl"; transcript_id "ENSMUST00000184475"; transcript_name "mmu-mir-1188.1-201"; transcript_source "ensembl"; tss_id "TSS31971"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109617719 109617857 . + . exon_id "ENSMUSE00001315456"; exon_number "3"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000183382"; transcript_name "Rian-010"; transcript_source "havana"; tss_id "TSS64054"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH miRNA exon 109618622 109618708 . + . exon_id "ENSMUSE00001315441"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000099067"; gene_name "AC152063.2"; gene_source "ensembl"; transcript_id "ENSMUST00000184857"; transcript_name "AC152063.2-201"; transcript_source "ensembl"; tss_id "TSS80531"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH miRNA exon 109618766 109618844 . + . exon_id "ENSMUSE00001316094"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000098610"; gene_name "mmu-mir-370"; gene_source "ensembl"; transcript_id "ENSMUST00000183521"; transcript_name "mmu-mir-370.1-201"; transcript_source "ensembl"; tss_id "TSS25559"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109620821 109620908 . + . exon_id "ENSMUSE00001313603"; exon_number "3"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184856"; transcript_name "Rian-012"; transcript_source "havana"; tss_id "TSS9385"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109620821 109620908 . + . exon_id "ENSMUSE00001313603"; exon_number "4"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000183382"; transcript_name "Rian-010"; transcript_source "havana"; tss_id "TSS64054"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109620835 109620908 . + . exon_id "ENSMUSE00001316157"; exon_number "1"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184351"; transcript_name "Rian-002"; transcript_source "havana"; tss_id "TSS63004"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109620835 109620908 . + . exon_id "ENSMUSE00001316157"; exon_number "1"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184896"; transcript_name "Rian-001"; transcript_source "havana"; tss_id "TSS63004"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109625609 109625683 . + . exon_id "ENSMUSE00001317263"; exon_number "2"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184351"; transcript_name "Rian-002"; transcript_source "havana"; tss_id "TSS63004"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109625609 109625683 . + . exon_id "ENSMUSE00001317263"; exon_number "2"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184896"; transcript_name "Rian-001"; transcript_source "havana"; tss_id "TSS63004"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109625609 109625683 . + . exon_id "ENSMUSE00001317263"; exon_number "4"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184856"; transcript_name "Rian-012"; transcript_source "havana"; tss_id "TSS9385"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109625609 109625683 . + . exon_id "ENSMUSE00001317263"; exon_number "5"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000183382"; transcript_name "Rian-010"; transcript_source "havana"; tss_id "TSS64054"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109625643 109625683 . + . exon_id "ENSMUSE00001314871"; exon_number "1"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184674"; transcript_name "Rian-013"; transcript_source "havana"; tss_id "TSS53627"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109627556 109627583 . + . exon_id "ENSMUSE00001317054"; exon_number "5"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184856"; transcript_name "Rian-012"; transcript_source "havana"; tss_id "TSS9385"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109627556 109627661 . + . exon_id "ENSMUSE00001314815"; exon_number "2"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184674"; transcript_name "Rian-013"; transcript_source "havana"; tss_id "TSS53627"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109627556 109627661 . + . exon_id "ENSMUSE00001314815"; exon_number "3"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184351"; transcript_name "Rian-002"; transcript_source "havana"; tss_id "TSS63004"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109627556 109627661 . + . exon_id "ENSMUSE00001314815"; exon_number "3"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184896"; transcript_name "Rian-001"; transcript_source "havana"; tss_id "TSS63004"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109627556 109627661 . + . exon_id "ENSMUSE00001314815"; exon_number "6"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000183382"; transcript_name "Rian-010"; transcript_source "havana"; tss_id "TSS64054"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH snoRNA exon 109631582 109631656 . + . exon_id "ENSMUSE00001314522"; exon_number "1"; gene_biotype "snoRNA"; gene_id "ENSMUSG00000098352"; gene_name "SNORD113"; gene_source "ensembl"; transcript_id "ENSMUST00000183909"; transcript_name "SNORD113.4-201"; transcript_source "ensembl"; tss_id "TSS31160"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109633306 109636781 . + . exon_id "ENSMUSE00001316183"; exon_number "1"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184984"; transcript_name "Rian-003"; transcript_source "havana"; tss_id "TSS26713"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH snoRNA exon 109634276 109634350 . + . exon_id "ENSMUSE00001317916"; exon_number "1"; gene_biotype "snoRNA"; gene_id "ENSMUSG00000098398"; gene_name "SNORD113"; gene_source "ensembl"; transcript_id "ENSMUST00000184393"; transcript_name "SNORD113.6-201"; transcript_source "ensembl"; tss_id "TSS705"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109634467 109634862 . + . exon_id "ENSMUSE00001314295"; exon_number "1"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000183579"; transcript_name "Rian-014"; transcript_source "havana"; tss_id "TSS71345"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109634702 109634740 . + . exon_id "ENSMUSE00001314439"; exon_number "4"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184351"; transcript_name "Rian-002"; transcript_source "havana"; tss_id "TSS63004"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109634711 109634862 . + . exon_id "ENSMUSE00001316955"; exon_number "1"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184691"; transcript_name "Rian-004"; transcript_source "havana"; tss_id "TSS68832"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109635902 109635965 . + . exon_id "ENSMUSE00001315961"; exon_number "2"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000183579"; transcript_name "Rian-014"; transcript_source "havana"; tss_id "TSS71345"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109635902 109635965 . + . exon_id "ENSMUSE00001315961"; exon_number "2"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184691"; transcript_name "Rian-004"; transcript_source "havana"; tss_id "TSS68832"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH snoRNA exon 109636520 109636592 . + . exon_id "ENSMUSE00001317405"; exon_number "1"; gene_biotype "snoRNA"; gene_id "ENSMUSG00000099084"; gene_name "SNORD113"; gene_source "ensembl"; transcript_id "ENSMUST00000185010"; transcript_name "SNORD113.20-201"; transcript_source "ensembl"; tss_id "TSS27"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109638347 109638434 . + . exon_id "ENSMUSE00001315101"; exon_number "3"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184674"; transcript_name "Rian-013"; transcript_source "havana"; tss_id "TSS53627"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109638347 109638434 . + . exon_id "ENSMUSE00001315101"; exon_number "3"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000183579"; transcript_name "Rian-014"; transcript_source "havana"; tss_id "TSS71345"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109638347 109638434 . + . exon_id "ENSMUSE00001315101"; exon_number "3"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184691"; transcript_name "Rian-004"; transcript_source "havana"; tss_id "TSS68832"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109638347 109638434 . + . exon_id "ENSMUSE00001315101"; exon_number "7"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000183382"; transcript_name "Rian-010"; transcript_source "havana"; tss_id "TSS64054"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109640775 109640836 . + . exon_id "ENSMUSE00001317686"; exon_number "4"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184674"; transcript_name "Rian-013"; transcript_source "havana"; tss_id "TSS53627"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109640775 109640836 . + . exon_id "ENSMUSE00001317686"; exon_number "4"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184896"; transcript_name "Rian-001"; transcript_source "havana"; tss_id "TSS63004"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109640775 109640836 . + . exon_id "ENSMUSE00001317686"; exon_number "4"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184691"; transcript_name "Rian-004"; transcript_source "havana"; tss_id "TSS68832"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109640849 109642859 . + . exon_id "ENSMUSE00001316564"; exon_number "1"; gene_biotype "lincRNA"; gene_id "ENSMUSG00000099040"; gene_name "RP23-204I16.2"; gene_source "havana"; transcript_id "ENSMUST00000183766"; transcript_name "RP23-204I16.2-001"; transcript_source "havana"; tss_id "TSS62114"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH snoRNA exon 109641530 109641602 . + . exon_id "ENSMUSE00001316535"; exon_number "1"; gene_biotype "snoRNA"; gene_id "ENSMUSG00000098902"; gene_name "SNORD113"; gene_source "ensembl"; transcript_id "ENSMUST00000184341"; transcript_name "SNORD113.14-201"; transcript_source "ensembl"; tss_id "TSS79520"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109643073 109643160 . + . exon_id "ENSMUSE00001316299"; exon_number "5"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184674"; transcript_name "Rian-013"; transcript_source "havana"; tss_id "TSS53627"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109643073 109643160 . + . exon_id "ENSMUSE00001316299"; exon_number "5"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184896"; transcript_name "Rian-001"; transcript_source "havana"; tss_id "TSS63004"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109643073 109643160 . + . exon_id "ENSMUSE00001316299"; exon_number "4"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000183579"; transcript_name "Rian-014"; transcript_source "havana"; tss_id "TSS71345"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109643073 109643160 . + . exon_id "ENSMUSE00001316299"; exon_number "5"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184691"; transcript_name "Rian-004"; transcript_source "havana"; tss_id "TSS68832"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109643922 109643969 . + . exon_id "ENSMUSE00001315583"; exon_number "6"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184674"; transcript_name "Rian-013"; transcript_source "havana"; tss_id "TSS53627"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109643922 109643969 . + . exon_id "ENSMUSE00001315583"; exon_number "6"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184896"; transcript_name "Rian-001"; transcript_source "havana"; tss_id "TSS63004"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109643922 109643969 . + . exon_id "ENSMUSE00001315583"; exon_number "6"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184691"; transcript_name "Rian-004"; transcript_source "havana"; tss_id "TSS68832"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109643922 109643972 . + . exon_id "ENSMUSE00001315480"; exon_number "5"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000183579"; transcript_name "Rian-014"; transcript_source "havana"; tss_id "TSS71345"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH snoRNA exon 109644256 109644326 . + . exon_id "ENSMUSE00001314538"; exon_number "1"; gene_biotype "snoRNA"; gene_id "ENSMUSG00000099288"; gene_name "SNORD113"; gene_source "ensembl"; transcript_id "ENSMUST00000183793"; transcript_name "SNORD113.23-201"; transcript_source "ensembl"; tss_id "TSS50279"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109645770 109645839 . + . exon_id "ENSMUSE00001314137"; exon_number "7"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184896"; transcript_name "Rian-001"; transcript_source "havana"; tss_id "TSS63004"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109645770 109645839 . + . exon_id "ENSMUSE00001314137"; exon_number "7"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184691"; transcript_name "Rian-004"; transcript_source "havana"; tss_id "TSS68832"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109645770 109645903 . + . exon_id "ENSMUSE00001317106"; exon_number "8"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000183382"; transcript_name "Rian-010"; transcript_source "havana"; tss_id "TSS64054"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109645770 109645969 . + . exon_id "ENSMUSE00001316927"; exon_number "7"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184674"; transcript_name "Rian-013"; transcript_source "havana"; tss_id "TSS53627"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109646355 109646771 . + . exon_id "ENSMUSE00001314292"; exon_number "8"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184691"; transcript_name "Rian-004"; transcript_source "havana"; tss_id "TSS68832"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109646355 109646848 . + . exon_id "ENSMUSE00001314880"; exon_number "8"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184896"; transcript_name "Rian-001"; transcript_source "havana"; tss_id "TSS63004"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH snoRNA exon 109646637 109646710 . + . exon_id "ENSMUSE00001314086"; exon_number "1"; gene_biotype "snoRNA"; gene_id "ENSMUSG00000098250"; gene_name "SNORD113"; gene_source "ensembl"; transcript_id "ENSMUST00000183753"; transcript_name "SNORD113.1-201"; transcript_source "ensembl"; tss_id "TSS7492"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109646649 109647259 . + . exon_id "ENSMUSE00001316107"; exon_number "1"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184233"; transcript_name "Rian-006"; transcript_source "havana"; tss_id "TSS82982"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109646670 109651607 . + . exon_id "ENSMUSE00001314754"; exon_number "1"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000183744"; transcript_name "Rian-007"; transcript_source "havana"; tss_id "TSS72883"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109647149 109647259 . + . exon_id "ENSMUSE00001314596"; exon_number "1"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000185018"; transcript_name "Rian-015"; transcript_source "havana"; tss_id "TSS81821"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109649662 109649750 . + . exon_id "ENSMUSE00001314251"; exon_number "2"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184233"; transcript_name "Rian-006"; transcript_source "havana"; tss_id "TSS82982"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109649662 109649750 . + . exon_id "ENSMUSE00001314251"; exon_number "2"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000185018"; transcript_name "Rian-015"; transcript_source "havana"; tss_id "TSS81821"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109649679 109649750 . + . exon_id "ENSMUSE00001315145"; exon_number "1"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000183419"; transcript_name "Rian-017"; transcript_source "havana"; tss_id "TSS26483"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH snoRNA exon 109650125 109650196 . + . exon_id "ENSMUSE00001317074"; exon_number "1"; gene_biotype "snoRNA"; gene_id "ENSMUSG00000099306"; gene_name "SNORD113"; gene_source "ensembl"; transcript_id "ENSMUST00000184930"; transcript_name "SNORD113.24-201"; transcript_source "ensembl"; tss_id "TSS56986"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109650577 109650665 . + . exon_id "ENSMUSE00001316420"; exon_number "1"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184706"; transcript_name "Rian-016"; transcript_source "havana"; tss_id "TSS23116"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109650580 109650665 . + . exon_id "ENSMUSE00001317613"; exon_number "3"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184233"; transcript_name "Rian-006"; transcript_source "havana"; tss_id "TSS82982"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109650580 109650665 . + . exon_id "ENSMUSE00001317613"; exon_number "3"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000185018"; transcript_name "Rian-015"; transcript_source "havana"; tss_id "TSS81821"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109650580 109650859 . + . exon_id "ENSMUSE00001316255"; exon_number "2"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000183419"; transcript_name "Rian-017"; transcript_source "havana"; tss_id "TSS26483"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109651189 109651607 . + . exon_id "ENSMUSE00001315860"; exon_number "1"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000183454"; transcript_name "Rian-018"; transcript_source "havana"; tss_id "TSS51209"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109651193 109651607 . + . exon_id "ENSMUSE00001316623"; exon_number "1"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184763"; transcript_name "Rian-019"; transcript_source "havana"; tss_id "TSS34698"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109651349 109651607 . + . exon_id "ENSMUSE00001316636"; exon_number "2"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184706"; transcript_name "Rian-016"; transcript_source "havana"; tss_id "TSS23116"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109651521 109651607 . + . exon_id "ENSMUSE00001317016"; exon_number "1"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184668"; transcript_name "Rian-020"; transcript_source "havana"; tss_id "TSS55061"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109651521 109651607 . + . exon_id "ENSMUSE00001317016"; exon_number "4"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184233"; transcript_name "Rian-006"; transcript_source "havana"; tss_id "TSS82982"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109651521 109651607 . + . exon_id "ENSMUSE00001317016"; exon_number "4"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000185018"; transcript_name "Rian-015"; transcript_source "havana"; tss_id "TSS81821"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH snoRNA exon 109651932 109652004 . + . exon_id "ENSMUSE00001314553"; exon_number "1"; gene_biotype "snoRNA"; gene_id "ENSMUSG00000099046"; gene_name "SNORD113"; gene_source "ensembl"; transcript_id "ENSMUST00000184018"; transcript_name "SNORD113.19-201"; transcript_source "ensembl"; tss_id "TSS8582"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109652367 109652446 . + . exon_id "ENSMUSE00001317063"; exon_number "2"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184668"; transcript_name "Rian-020"; transcript_source "havana"; tss_id "TSS55061"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109652367 109652446 . + . exon_id "ENSMUSE00001317063"; exon_number "5"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184233"; transcript_name "Rian-006"; transcript_source "havana"; tss_id "TSS82982"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109652367 109652446 . + . exon_id "ENSMUSE00001317063"; exon_number "2"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184763"; transcript_name "Rian-019"; transcript_source "havana"; tss_id "TSS34698"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109652367 109652446 . + . exon_id "ENSMUSE00001317063"; exon_number "3"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184706"; transcript_name "Rian-016"; transcript_source "havana"; tss_id "TSS23116"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109652367 109652446 . + . exon_id "ENSMUSE00001317063"; exon_number "2"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000183454"; transcript_name "Rian-018"; transcript_source "havana"; tss_id "TSS51209"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109652367 109652446 . + . exon_id "ENSMUSE00001317063"; exon_number "5"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000185018"; transcript_name "Rian-015"; transcript_source "havana"; tss_id "TSS81821"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109652367 109655517 . + . exon_id "ENSMUSE00001314486"; exon_number "2"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000183744"; transcript_name "Rian-007"; transcript_source "havana"; tss_id "TSS72883"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109653209 109653223 . + . exon_id "ENSMUSE00001314737"; exon_number "3"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184763"; transcript_name "Rian-019"; transcript_source "havana"; tss_id "TSS34698"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109653209 109653223 . + . exon_id "ENSMUSE00001314737"; exon_number "6"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000185018"; transcript_name "Rian-015"; transcript_source "havana"; tss_id "TSS81821"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH snoRNA exon 109653541 109653612 . + . exon_id "ENSMUSE00001315865"; exon_number "1"; gene_biotype "snoRNA"; gene_id "ENSMUSG00000098581"; gene_name "SNORD113"; gene_source "ensembl"; transcript_id "ENSMUST00000184376"; transcript_name "SNORD113.10-201"; transcript_source "ensembl"; tss_id "TSS17163"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109654794 109654940 . + . exon_id "ENSMUSE00001317963"; exon_number "3"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184668"; transcript_name "Rian-020"; transcript_source "havana"; tss_id "TSS55061"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109654794 109654940 . + . exon_id "ENSMUSE00001317963"; exon_number "6"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184233"; transcript_name "Rian-006"; transcript_source "havana"; tss_id "TSS82982"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109654794 109654940 . + . exon_id "ENSMUSE00001317963"; exon_number "4"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184763"; transcript_name "Rian-019"; transcript_source "havana"; tss_id "TSS34698"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109654794 109654940 . + . exon_id "ENSMUSE00001317963"; exon_number "4"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184706"; transcript_name "Rian-016"; transcript_source "havana"; tss_id "TSS23116"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109654794 109654940 . + . exon_id "ENSMUSE00001317963"; exon_number "3"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000183454"; transcript_name "Rian-018"; transcript_source "havana"; tss_id "TSS51209"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109654794 109654940 . + . exon_id "ENSMUSE00001317963"; exon_number "7"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000185018"; transcript_name "Rian-015"; transcript_source "havana"; tss_id "TSS81821"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH snoRNA exon 109655135 109655206 . + . exon_id "ENSMUSE00001315024"; exon_number "1"; gene_biotype "snoRNA"; gene_id "ENSMUSG00000098971"; gene_name "SNORD113"; gene_source "ensembl"; transcript_id "ENSMUST00000183667"; transcript_name "SNORD113.15-201"; transcript_source "ensembl"; tss_id "TSS14717"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109656357 109656377 . + . exon_id "ENSMUSE00001316020"; exon_number "5"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184706"; transcript_name "Rian-016"; transcript_source "havana"; tss_id "TSS23116"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109656357 109656398 . + . exon_id "ENSMUSE00001315113"; exon_number "5"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184763"; transcript_name "Rian-019"; transcript_source "havana"; tss_id "TSS34698"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109656357 109656442 . + . exon_id "ENSMUSE00001314722"; exon_number "4"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184668"; transcript_name "Rian-020"; transcript_source "havana"; tss_id "TSS55061"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109656357 109656442 . + . exon_id "ENSMUSE00001314722"; exon_number "7"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184233"; transcript_name "Rian-006"; transcript_source "havana"; tss_id "TSS82982"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109656357 109656442 . + . exon_id "ENSMUSE00001314722"; exon_number "4"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000183454"; transcript_name "Rian-018"; transcript_source "havana"; tss_id "TSS51209"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109656357 109656442 . + . exon_id "ENSMUSE00001314722"; exon_number "8"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000185018"; transcript_name "Rian-015"; transcript_source "havana"; tss_id "TSS81821"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH snoRNA exon 109656853 109656924 . + . exon_id "ENSMUSE00001313725"; exon_number "1"; gene_biotype "snoRNA"; gene_id "ENSMUSG00000098372"; gene_name "SNORD113"; gene_source "ensembl"; transcript_id "ENSMUST00000184345"; transcript_name "SNORD113.5-201"; transcript_source "ensembl"; tss_id "TSS66199"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109657296 109657339 . + . exon_id "ENSMUSE00001316197"; exon_number "8"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184233"; transcript_name "Rian-006"; transcript_source "havana"; tss_id "TSS82982"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109657296 109657348 . + . exon_id "ENSMUSE00001316930"; exon_number "5"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184668"; transcript_name "Rian-020"; transcript_source "havana"; tss_id "TSS55061"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109657296 109657348 . + . exon_id "ENSMUSE00001316930"; exon_number "5"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000183454"; transcript_name "Rian-018"; transcript_source "havana"; tss_id "TSS51209"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109657296 109657348 . + . exon_id "ENSMUSE00001316930"; exon_number "9"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000185018"; transcript_name "Rian-015"; transcript_source "havana"; tss_id "TSS81821"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH snoRNA exon 109657633 109657704 . + . exon_id "ENSMUSE00001317757"; exon_number "1"; gene_biotype "snoRNA"; gene_id "ENSMUSG00000098673"; gene_name "SNORD113"; gene_source "ensembl"; transcript_id "ENSMUST00000183854"; transcript_name "SNORD113.13-201"; transcript_source "ensembl"; tss_id "TSS58023"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109658561 109658629 . + . exon_id "ENSMUSE00001316742"; exon_number "6"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184668"; transcript_name "Rian-020"; transcript_source "havana"; tss_id "TSS55061"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109658561 109658629 . + . exon_id "ENSMUSE00001316742"; exon_number "9"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184233"; transcript_name "Rian-006"; transcript_source "havana"; tss_id "TSS82982"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109658561 109658629 . + . exon_id "ENSMUSE00001316742"; exon_number "6"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000183454"; transcript_name "Rian-018"; transcript_source "havana"; tss_id "TSS51209"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109658561 109658629 . + . exon_id "ENSMUSE00001316742"; exon_number "10"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000185018"; transcript_name "Rian-015"; transcript_source "havana"; tss_id "TSS81821"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH snoRNA exon 109658915 109658986 . + . exon_id "ENSMUSE00001317923"; exon_number "1"; gene_biotype "snoRNA"; gene_id "ENSMUSG00000099026"; gene_name "SNORD113"; gene_source "ensembl"; transcript_id "ENSMUST00000183697"; transcript_name "SNORD113.16-201"; transcript_source "ensembl"; tss_id "TSS6750"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109660231 109660261 . + . exon_id "ENSMUSE00001314625"; exon_number "7"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184668"; transcript_name "Rian-020"; transcript_source "havana"; tss_id "TSS55061"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109660231 109660315 . + . exon_id "ENSMUSE00001315415"; exon_number "10"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184233"; transcript_name "Rian-006"; transcript_source "havana"; tss_id "TSS82982"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109660231 109660315 . + . exon_id "ENSMUSE00001315415"; exon_number "7"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000183454"; transcript_name "Rian-018"; transcript_source "havana"; tss_id "TSS51209"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109660231 109660315 . + . exon_id "ENSMUSE00001315415"; exon_number "11"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000185018"; transcript_name "Rian-015"; transcript_source "havana"; tss_id "TSS81821"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109661254 109661533 . + . exon_id "ENSMUSE00001313691"; exon_number "8"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000183454"; transcript_name "Rian-018"; transcript_source "havana"; tss_id "TSS51209"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH lincRNA exon 109661254 109662224 . + . exon_id "ENSMUSE00001315493"; exon_number "11"; gene_biotype "processed_transcript"; gene_id "ENSMUSG00000099249"; gene_name "Rian"; gene_source "havana"; transcript_id "ENSMUST00000184233"; transcript_name "Rian-006"; transcript_source "havana"; tss_id "TSS82982"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH snoRNA exon 109674421 109674502 . + . exon_id "ENSMUSE00001316181"; exon_number "1"; gene_biotype "snoRNA"; gene_id "ENSMUSG00000098637"; gene_name "SNORD113"; gene_source "ensembl"; transcript_id "ENSMUST00000184447"; transcript_name "SNORD113.12-201"; transcript_source "ensembl"; tss_id "TSS19872"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH snoRNA exon 109680453 109680521 . + . exon_id "ENSMUSE00001315105"; exon_number "1"; gene_biotype "snoRNA"; gene_id "ENSMUSG00000098523"; gene_name "SNORD113"; gene_source "ensembl"; transcript_id "ENSMUST00000183391"; transcript_name "SNORD113.8-201"; transcript_source "ensembl"; tss_id "TSS58720"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH snoRNA exon 109681308 109681382 . + . exon_id "ENSMUSE00001313825"; exon_number "1"; gene_biotype "snoRNA"; gene_id "ENSMUSG00000098337"; gene_name "SNORD113"; gene_source "ensembl"; transcript_id "ENSMUST00000183585"; transcript_name "SNORD113.3-201"; transcript_source "ensembl"; tss_id "TSS23667"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH snoRNA exon 109682027 109682101 . + . exon_id "ENSMUSE00001316667"; exon_number "1"; gene_biotype "snoRNA"; gene_id "ENSMUSG00000098556"; gene_name "SNORD113"; gene_source "ensembl"; transcript_id "ENSMUST00000184368"; transcript_name "SNORD113.9-201"; transcript_source "ensembl"; tss_id "TSS18802"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH miRNA exon 109682705 109682781 . + . exon_id "ENSMUSE00001314198"; exon_number "1"; gene_biotype "miRNA"; gene_id "ENSMUSG00000098738"; gene_name "mmu-mir-882"; gene_source "ensembl"; transcript_id "ENSMUST00000183466"; transcript_name "mmu-mir-882.1-201"; transcript_source "ensembl"; tss_id "TSS52829"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH snoRNA exon 109682892 109682966 . + . exon_id "ENSMUSE00001315351"; exon_number "1"; gene_biotype "snoRNA"; gene_id "ENSMUSG00000099271"; gene_name "SNORD113"; gene_source "ensembl"; transcript_id "ENSMUST00000184468"; transcript_name "SNORD113.22-201"; transcript_source "ensembl"; tss_id "TSS38972"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH snoRNA exon 109683502 109683576 . + . exon_id "ENSMUSE00001317402"; exon_number "1"; gene_biotype "snoRNA"; gene_id "ENSMUSG00000099038"; gene_name "SNORD113"; gene_source "ensembl"; transcript_id "ENSMUST00000184057"; transcript_name "SNORD113.18-201"; transcript_source "ensembl"; tss_id "TSS10636"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH snoRNA exon 109685470 109685542 . + . exon_id "ENSMUSE00001313576"; exon_number "1"; gene_biotype "snoRNA"; gene_id "ENSMUSG00000098616"; gene_name "SNORD113"; gene_source "ensembl"; transcript_id "ENSMUST00000183981"; transcript_name "SNORD113.11-201"; transcript_source "ensembl"; tss_id "TSS33023"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH snoRNA exon 109687306 109687377 . + . exon_id "ENSMUSE00001313708"; exon_number "1"; gene_biotype "snoRNA"; gene_id "ENSMUSG00000099029"; gene_name "SNORD113"; gene_source "ensembl"; transcript_id "ENSMUST00000183810"; transcript_name "SNORD113.17-201"; transcript_source "ensembl"; tss_id "TSS59674"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH snoRNA exon 109688563 109688633 . + . exon_id "ENSMUSE00001316625"; exon_number "1"; gene_biotype "snoRNA"; gene_id "ENSMUSG00000098277"; gene_name "SNORD113"; gene_source "ensembl"; transcript_id "ENSMUST00000184352"; transcript_name "SNORD113.2-201"; transcript_source "ensembl"; tss_id "TSS69115"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4180_PATCH' not found in Genome fasta files for line: MG4180_PATCH snoRNA exon 109689985 109690052 . + . exon_id "ENSMUSE00001315715"; exon_number "1"; gene_biotype "snoRNA"; gene_id "ENSMUSG00000098517"; gene_name "SNORD113"; gene_source "ensembl"; transcript_id "ENSMUST00000184946"; transcript_name "SNORD113.7-201"; transcript_source "ensembl"; tss_id "TSS4114"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4209_PATCH' not found in Genome fasta files for line: MG4209_PATCH protein_coding exon 45861297 45861329 . + . exon_id "ENSMUSE00001134542"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097802"; gene_name "AC233742.2"; gene_source "ensembl"; p_id "P45207"; transcript_id "ENSMUST00000181257"; transcript_name "AC233742.2-201"; transcript_source "ensembl"; tss_id "TSS80558"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4209_PATCH' not found in Genome fasta files for line: MG4209_PATCH protein_coding exon 45861705 45861854 . + . exon_id "ENSMUSE00001098516"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097802"; gene_name "AC233742.2"; gene_source "ensembl"; p_id "P45207"; transcript_id "ENSMUST00000181257"; transcript_name "AC233742.2-201"; transcript_source "ensembl"; tss_id "TSS80558"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4209_PATCH' not found in Genome fasta files for line: MG4209_PATCH protein_coding exon 45862356 45863273 . + . exon_id "ENSMUSE00001179282"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097802"; gene_name "AC233742.2"; gene_source "ensembl"; p_id "P45207"; transcript_id "ENSMUST00000181257"; transcript_name "AC233742.2-201"; transcript_source "ensembl"; tss_id "TSS80558"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4209_PATCH' not found in Genome fasta files for line: MG4209_PATCH protein_coding exon 45949669 45949777 . + . exon_id "ENSMUSE00001153675"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097528"; gene_name "AC233742.1"; gene_source "ensembl"; p_id "P29488"; transcript_id "ENSMUST00000180606"; transcript_name "AC233742.1-201"; transcript_source "ensembl"; tss_id "TSS17112"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4209_PATCH' not found in Genome fasta files for line: MG4209_PATCH protein_coding exon 45955085 45955151 . + . exon_id "ENSMUSE00001177814"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097528"; gene_name "AC233742.1"; gene_source "ensembl"; p_id "P29488"; transcript_id "ENSMUST00000180606"; transcript_name "AC233742.1-201"; transcript_source "ensembl"; tss_id "TSS17112"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4209_PATCH' not found in Genome fasta files for line: MG4209_PATCH protein_coding exon 45955739 45955773 . + . exon_id "ENSMUSE00001097159"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097528"; gene_name "AC233742.1"; gene_source "ensembl"; p_id "P29488"; transcript_id "ENSMUST00000180606"; transcript_name "AC233742.1-201"; transcript_source "ensembl"; tss_id "TSS17112"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4209_PATCH' not found in Genome fasta files for line: MG4209_PATCH protein_coding exon 45962782 45962848 . + . exon_id "ENSMUSE00001113223"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097528"; gene_name "AC233742.1"; gene_source "ensembl"; p_id "P29488"; transcript_id "ENSMUST00000180606"; transcript_name "AC233742.1-201"; transcript_source "ensembl"; tss_id "TSS17112"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4209_PATCH' not found in Genome fasta files for line: MG4209_PATCH protein_coding exon 45963414 45963448 . + . exon_id "ENSMUSE00001128506"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097528"; gene_name "AC233742.1"; gene_source "ensembl"; p_id "P29488"; transcript_id "ENSMUST00000180606"; transcript_name "AC233742.1-201"; transcript_source "ensembl"; tss_id "TSS17112"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4209_PATCH' not found in Genome fasta files for line: MG4209_PATCH protein_coding exon 45970593 45970710 . + . exon_id "ENSMUSE00001118045"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097528"; gene_name "AC233742.1"; gene_source "ensembl"; p_id "P29488"; transcript_id "ENSMUST00000180606"; transcript_name "AC233742.1-201"; transcript_source "ensembl"; tss_id "TSS17112"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4209_PATCH' not found in Genome fasta files for line: MG4209_PATCH protein_coding exon 45971457 45971523 . + . exon_id "ENSMUSE00001147647"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097528"; gene_name "AC233742.1"; gene_source "ensembl"; p_id "P29488"; transcript_id "ENSMUST00000180606"; transcript_name "AC233742.1-201"; transcript_source "ensembl"; tss_id "TSS17112"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4209_PATCH' not found in Genome fasta files for line: MG4209_PATCH protein_coding exon 46156520 46156586 . - . exon_id "ENSMUSE00001120372"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097238"; gene_name "AC212990.1"; gene_source "ensembl"; p_id "P24841"; transcript_id "ENSMUST00000180451"; transcript_name "AC212990.1-201"; transcript_source "ensembl"; tss_id "TSS27249"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4209_PATCH' not found in Genome fasta files for line: MG4209_PATCH protein_coding exon 46157336 46157453 . - . exon_id "ENSMUSE00001098262"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097238"; gene_name "AC212990.1"; gene_source "ensembl"; p_id "P24841"; transcript_id "ENSMUST00000180451"; transcript_name "AC212990.1-201"; transcript_source "ensembl"; tss_id "TSS27249"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4209_PATCH' not found in Genome fasta files for line: MG4209_PATCH protein_coding exon 46164568 46164602 . - . exon_id "ENSMUSE00001130649"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097238"; gene_name "AC212990.1"; gene_source "ensembl"; p_id "P24841"; transcript_id "ENSMUST00000180451"; transcript_name "AC212990.1-201"; transcript_source "ensembl"; tss_id "TSS27249"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4209_PATCH' not found in Genome fasta files for line: MG4209_PATCH protein_coding exon 46165163 46165229 . - . exon_id "ENSMUSE00001114037"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097238"; gene_name "AC212990.1"; gene_source "ensembl"; p_id "P24841"; transcript_id "ENSMUST00000180451"; transcript_name "AC212990.1-201"; transcript_source "ensembl"; tss_id "TSS27249"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4209_PATCH' not found in Genome fasta files for line: MG4209_PATCH protein_coding exon 46172275 46172309 . - . exon_id "ENSMUSE00001132971"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097238"; gene_name "AC212990.1"; gene_source "ensembl"; p_id "P24841"; transcript_id "ENSMUST00000180451"; transcript_name "AC212990.1-201"; transcript_source "ensembl"; tss_id "TSS27249"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4209_PATCH' not found in Genome fasta files for line: MG4209_PATCH protein_coding exon 46172862 46172928 . - . exon_id "ENSMUSE00001165707"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097238"; gene_name "AC212990.1"; gene_source "ensembl"; p_id "P24841"; transcript_id "ENSMUST00000180451"; transcript_name "AC212990.1-201"; transcript_source "ensembl"; tss_id "TSS27249"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4209_PATCH' not found in Genome fasta files for line: MG4209_PATCH protein_coding exon 46184324 46184432 . - . exon_id "ENSMUSE00001171003"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097238"; gene_name "AC212990.1"; gene_source "ensembl"; p_id "P24841"; transcript_id "ENSMUST00000180451"; transcript_name "AC212990.1-201"; transcript_source "ensembl"; tss_id "TSS27249"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4211_PATCH' not found in Genome fasta files for line: MG4211_PATCH protein_coding exon 66145305 66145853 . - . exon_id "ENSMUSE00001161670"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097389"; gene_name "AC240971.1"; gene_source "ensembl"; p_id "P2870"; transcript_id "ENSMUST00000180910"; transcript_name "AC240971.1-201"; transcript_source "ensembl"; tss_id "TSS7932"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4211_PATCH' not found in Genome fasta files for line: MG4211_PATCH protein_coding exon 66145965 66146387 . - . exon_id "ENSMUSE00001124898"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097389"; gene_name "AC240971.1"; gene_source "ensembl"; p_id "P2870"; transcript_id "ENSMUST00000180910"; transcript_name "AC240971.1-201"; transcript_source "ensembl"; tss_id "TSS7932"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4211_PATCH' not found in Genome fasta files for line: MG4211_PATCH protein_coding exon 66176397 66177023 . + . exon_id "ENSMUSE00001133408"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097510"; gene_name "AC240971.2"; gene_source "ensembl"; p_id "P23052"; transcript_id "ENSMUST00000181463"; transcript_name "AC240971.2-201"; transcript_source "ensembl"; tss_id "TSS37790"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15499669 15500214 . - . exon_id "ENSMUSE00001166295"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097490"; gene_name "AC244695.2"; gene_source "ensembl"; p_id "P22334"; transcript_id "ENSMUST00000181616"; transcript_name "AC244695.2-201"; transcript_source "ensembl"; tss_id "TSS30921"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15499689 15499851 . - . exon_id "ENSMUSE00001106879"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097490"; gene_name "AC244695.2"; gene_source "ensembl"; p_id "P5229"; transcript_id "ENSMUST00000181970"; transcript_name "AC244695.2-202"; transcript_source "ensembl"; tss_id "TSS87928"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15499895 15500214 . - . exon_id "ENSMUSE00001176375"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097490"; gene_name "AC244695.2"; gene_source "ensembl"; p_id "P5229"; transcript_id "ENSMUST00000181970"; transcript_name "AC244695.2-202"; transcript_source "ensembl"; tss_id "TSS87928"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15500958 15501138 . - . exon_id "ENSMUSE00001181280"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097490"; gene_name "AC244695.2"; gene_source "ensembl"; p_id "P22334"; transcript_id "ENSMUST00000181616"; transcript_name "AC244695.2-201"; transcript_source "ensembl"; tss_id "TSS30921"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15500958 15501138 . - . exon_id "ENSMUSE00001181280"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097490"; gene_name "AC244695.2"; gene_source "ensembl"; p_id "P5229"; transcript_id "ENSMUST00000181970"; transcript_name "AC244695.2-202"; transcript_source "ensembl"; tss_id "TSS87928"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15501769 15501912 . - . exon_id "ENSMUSE00001170454"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097490"; gene_name "AC244695.2"; gene_source "ensembl"; p_id "P22334"; transcript_id "ENSMUST00000181616"; transcript_name "AC244695.2-201"; transcript_source "ensembl"; tss_id "TSS30921"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15501769 15501918 . - . exon_id "ENSMUSE00001098223"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097490"; gene_name "AC244695.2"; gene_source "ensembl"; p_id "P5229"; transcript_id "ENSMUST00000181970"; transcript_name "AC244695.2-202"; transcript_source "ensembl"; tss_id "TSS87928"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15503132 15503291 . - . exon_id "ENSMUSE00001152894"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097490"; gene_name "AC244695.2"; gene_source "ensembl"; p_id "P22334"; transcript_id "ENSMUST00000181616"; transcript_name "AC244695.2-201"; transcript_source "ensembl"; tss_id "TSS30921"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15503132 15503291 . - . exon_id "ENSMUSE00001152894"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097490"; gene_name "AC244695.2"; gene_source "ensembl"; p_id "P5229"; transcript_id "ENSMUST00000181970"; transcript_name "AC244695.2-202"; transcript_source "ensembl"; tss_id "TSS87928"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15504309 15504447 . - . exon_id "ENSMUSE00001171957"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097490"; gene_name "AC244695.2"; gene_source "ensembl"; p_id "P5229"; transcript_id "ENSMUST00000181970"; transcript_name "AC244695.2-202"; transcript_source "ensembl"; tss_id "TSS87928"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15544473 15544547 . + . exon_id "ENSMUSE00001157594"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097570"; gene_name "AC244695.3"; gene_source "ensembl"; p_id "P9827"; transcript_id "ENSMUST00000180976"; transcript_name "AC244695.3-201"; transcript_source "ensembl"; tss_id "TSS49483"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15552441 15552978 . - . exon_id "ENSMUSE00001183512"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097611"; gene_name "AC244695.4"; gene_source "ensembl"; p_id "P16121"; transcript_id "ENSMUST00000180499"; transcript_name "AC244695.4-201"; transcript_source "ensembl"; tss_id "TSS57216"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15553717 15553897 . - . exon_id "ENSMUSE00001190345"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097611"; gene_name "AC244695.4"; gene_source "ensembl"; p_id "P16121"; transcript_id "ENSMUST00000180499"; transcript_name "AC244695.4-201"; transcript_source "ensembl"; tss_id "TSS57216"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15553771 15553917 . + . exon_id "ENSMUSE00001119303"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097570"; gene_name "AC244695.3"; gene_source "ensembl"; p_id "P9827"; transcript_id "ENSMUST00000180976"; transcript_name "AC244695.3-201"; transcript_source "ensembl"; tss_id "TSS49483"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15554528 15554677 . - . exon_id "ENSMUSE00001161656"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097611"; gene_name "AC244695.4"; gene_source "ensembl"; p_id "P16121"; transcript_id "ENSMUST00000180499"; transcript_name "AC244695.4-201"; transcript_source "ensembl"; tss_id "TSS57216"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15555891 15556050 . - . exon_id "ENSMUSE00001125780"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097611"; gene_name "AC244695.4"; gene_source "ensembl"; p_id "P16121"; transcript_id "ENSMUST00000180499"; transcript_name "AC244695.4-201"; transcript_source "ensembl"; tss_id "TSS57216"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15557064 15557206 . - . exon_id "ENSMUSE00001109385"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097611"; gene_name "AC244695.4"; gene_source "ensembl"; p_id "P16121"; transcript_id "ENSMUST00000180499"; transcript_name "AC244695.4-201"; transcript_source "ensembl"; tss_id "TSS57216"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15557064 15557271 . - . exon_id "ENSMUSE00001106120"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097490"; gene_name "AC244695.2"; gene_source "ensembl"; p_id "P22334"; transcript_id "ENSMUST00000181616"; transcript_name "AC244695.2-201"; transcript_source "ensembl"; tss_id "TSS30921"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15605252 15605459 . + . exon_id "ENSMUSE00001186378"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097395"; gene_name "AC244695.1"; gene_source "ensembl"; p_id "P38466"; transcript_id "ENSMUST00000180642"; transcript_name "AC244695.1-201"; transcript_source "ensembl"; tss_id "TSS26565"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15605656 15606502 . - . exon_id "ENSMUSE00001314783"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099217"; gene_name "AC244694.1"; gene_source "ensembl"; p_id "P43557"; transcript_id "ENSMUST00000185081"; transcript_name "AC244694.1-201"; transcript_source "ensembl"; tss_id "TSS65327"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15606473 15606632 . + . exon_id "ENSMUSE00001095821"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097395"; gene_name "AC244695.1"; gene_source "ensembl"; p_id "P38466"; transcript_id "ENSMUST00000180642"; transcript_name "AC244695.1-201"; transcript_source "ensembl"; tss_id "TSS26565"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15607846 15607995 . + . exon_id "ENSMUSE00001127710"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097395"; gene_name "AC244695.1"; gene_source "ensembl"; p_id "P38466"; transcript_id "ENSMUST00000180642"; transcript_name "AC244695.1-201"; transcript_source "ensembl"; tss_id "TSS26565"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15608626 15608809 . + . exon_id "ENSMUSE00001116523"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097395"; gene_name "AC244695.1"; gene_source "ensembl"; p_id "P38466"; transcript_id "ENSMUST00000180642"; transcript_name "AC244695.1-201"; transcript_source "ensembl"; tss_id "TSS26565"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15609553 15609696 . + . exon_id "ENSMUSE00001193967"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097395"; gene_name "AC244695.1"; gene_source "ensembl"; p_id "P38466"; transcript_id "ENSMUST00000180642"; transcript_name "AC244695.1-201"; transcript_source "ensembl"; tss_id "TSS26565"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15647048 15647255 . + . exon_id "ENSMUSE00001191861"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097696"; gene_name "Speer4d"; gene_source "ensembl_havana"; p_id "P16736"; transcript_id "ENSMUST00000180847"; transcript_name "Speer4d-001"; transcript_source "ensembl_havana"; tss_id "TSS18979"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15648146 15648429 . + . exon_id "ENSMUSE00001116144"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097696"; gene_name "Speer4d"; gene_source "ensembl_havana"; p_id "P27975"; transcript_id "ENSMUST00000180994"; transcript_name "Speer4d-003"; transcript_source "havana"; tss_id "TSS17885"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15648270 15648429 . + . exon_id "ENSMUSE00001111666"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097696"; gene_name "Speer4d"; gene_source "ensembl_havana"; p_id "P16736"; transcript_id "ENSMUST00000180847"; transcript_name "Speer4d-001"; transcript_source "ensembl_havana"; tss_id "TSS18979"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15649650 15649793 . + . exon_id "ENSMUSE00001177317"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097696"; gene_name "Speer4d"; gene_source "ensembl_havana"; p_id "P16736"; transcript_id "ENSMUST00000180847"; transcript_name "Speer4d-001"; transcript_source "ensembl_havana"; tss_id "TSS18979"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15649650 15649793 . + . exon_id "ENSMUSE00001177317"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097696"; gene_name "Speer4d"; gene_source "ensembl_havana"; p_id "P27975"; transcript_id "ENSMUST00000180994"; transcript_name "Speer4d-003"; transcript_source "havana"; tss_id "TSS17885"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15650404 15650550 . - . exon_id "ENSMUSE00001316381"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099217"; gene_name "AC244694.1"; gene_source "ensembl"; p_id "P43557"; transcript_id "ENSMUST00000185081"; transcript_name "AC244694.1-201"; transcript_source "ensembl"; tss_id "TSS65327"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15650424 15650607 . + . exon_id "ENSMUSE00001174981"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097696"; gene_name "Speer4d"; gene_source "ensembl_havana"; p_id "P16736"; transcript_id "ENSMUST00000180847"; transcript_name "Speer4d-001"; transcript_source "ensembl_havana"; tss_id "TSS18979"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15650424 15650607 . + . exon_id "ENSMUSE00001174981"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097696"; gene_name "Speer4d"; gene_source "ensembl_havana"; p_id "P27975"; transcript_id "ENSMUST00000180994"; transcript_name "Speer4d-003"; transcript_source "havana"; tss_id "TSS17885"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15651351 15651595 . + . exon_id "ENSMUSE00001127146"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097696"; gene_name "Speer4d"; gene_source "ensembl_havana"; p_id "P27975"; transcript_id "ENSMUST00000180994"; transcript_name "Speer4d-003"; transcript_source "havana"; tss_id "TSS17885"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15651351 15651848 . + . exon_id "ENSMUSE00001156999"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097696"; gene_name "Speer4d"; gene_source "ensembl_havana"; p_id "P16736"; transcript_id "ENSMUST00000180847"; transcript_name "Speer4d-001"; transcript_source "ensembl_havana"; tss_id "TSS18979"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15662033 15662107 . - . exon_id "ENSMUSE00001313882"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099217"; gene_name "AC244694.1"; gene_source "ensembl"; p_id "P43557"; transcript_id "ENSMUST00000185081"; transcript_name "AC244694.1-201"; transcript_source "ensembl"; tss_id "TSS65327"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15662111 15662113 . - . exon_id "ENSMUSE00001317961"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099217"; gene_name "AC244694.1"; gene_source "ensembl"; p_id "P43557"; transcript_id "ENSMUST00000185081"; transcript_name "AC244694.1-201"; transcript_source "ensembl"; tss_id "TSS65327"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4212_PATCH' not found in Genome fasta files for line: MG4212_PATCH protein_coding exon 15683818 15684663 . + . exon_id "ENSMUSE00001163458"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097570"; gene_name "AC244695.3"; gene_source "ensembl"; p_id "P9827"; transcript_id "ENSMUST00000180976"; transcript_name "AC244695.3-201"; transcript_source "ensembl"; tss_id "TSS49483"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4213_PATCH' not found in Genome fasta files for line: MG4213_PATCH protein_coding exon 49318070 49318753 . - . exon_id "ENSMUSE00001124440"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097765"; gene_name "AC243554.1"; gene_source "ensembl"; p_id "P27705"; transcript_id "ENSMUST00000181065"; transcript_name "AC243554.1-201"; transcript_source "ensembl"; tss_id "TSS80328"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4213_PATCH' not found in Genome fasta files for line: MG4213_PATCH protein_coding exon 49392584 49393678 . - . exon_id "ENSMUSE00001181565"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096989"; gene_name "SSTY2"; gene_source "ensembl"; p_id "P36776"; transcript_id "ENSMUST00000181357"; transcript_name "SSTY2-201"; transcript_source "ensembl"; tss_id "TSS48253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4213_PATCH' not found in Genome fasta files for line: MG4213_PATCH protein_coding exon 49394790 49394900 . - . exon_id "ENSMUSE00001121013"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000096989"; gene_name "SSTY2"; gene_source "ensembl"; p_id "P36776"; transcript_id "ENSMUST00000181357"; transcript_name "SSTY2-201"; transcript_source "ensembl"; tss_id "TSS48253"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4213_PATCH' not found in Genome fasta files for line: MG4213_PATCH protein_coding exon 49459135 49460092 . - . exon_id "ENSMUSE00001135322"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097741"; gene_name "AC242685.1"; gene_source "ensembl"; p_id "P27573"; transcript_id "ENSMUST00000181081"; transcript_name "AC242685.1-201"; transcript_source "ensembl"; tss_id "TSS69534"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4213_PATCH' not found in Genome fasta files for line: MG4213_PATCH protein_coding exon 49460968 49461154 . - . exon_id "ENSMUSE00001134740"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097741"; gene_name "AC242685.1"; gene_source "ensembl"; p_id "P27573"; transcript_id "ENSMUST00000181081"; transcript_name "AC242685.1-201"; transcript_source "ensembl"; tss_id "TSS69534"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4213_PATCH' not found in Genome fasta files for line: MG4213_PATCH protein_coding exon 49461379 49461519 . - . exon_id "ENSMUSE00001166993"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097741"; gene_name "AC242685.1"; gene_source "ensembl"; p_id "P27573"; transcript_id "ENSMUST00000181081"; transcript_name "AC242685.1-201"; transcript_source "ensembl"; tss_id "TSS69534"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4213_PATCH' not found in Genome fasta files for line: MG4213_PATCH protein_coding exon 49489545 49490627 . + . exon_id "ENSMUSE00001172057"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097269"; gene_name "4932431L22Rik"; gene_source "ensembl"; p_id "P2398"; transcript_id "ENSMUST00000181626"; transcript_name "4932431L22Rik-201"; transcript_source "ensembl"; tss_id "TSS19922"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37804842 37804929 . + . exon_id "ENSMUSE00001317947"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097306"; gene_name "RHOX5"; gene_source "ensembl_havana"; p_id "P45494"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000185127"; transcript_name "RHOX5-001"; transcript_source "havana"; tss_id "TSS35087"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37804851 37804929 . + . exon_id "ENSMUSE00001131404"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097306"; gene_name "RHOX5"; gene_source "ensembl_havana"; p_id "P29729"; transcript_id "ENSMUST00000180893"; transcript_name "RHOX5-201"; transcript_source "ensembl"; tss_id "TSS51602"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37805106 37805463 . + . exon_id "ENSMUSE00001148507"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097306"; gene_name "RHOX5"; gene_source "ensembl_havana"; p_id "P45494"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000185127"; transcript_name "RHOX5-001"; transcript_source "havana"; tss_id "TSS35087"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37805106 37805463 . + . exon_id "ENSMUSE00001148507"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097306"; gene_name "RHOX5"; gene_source "ensembl_havana"; p_id "P29729"; transcript_id "ENSMUST00000180893"; transcript_name "RHOX5-201"; transcript_source "ensembl"; tss_id "TSS51602"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37806074 37806119 . + . exon_id "ENSMUSE00001183952"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097306"; gene_name "RHOX5"; gene_source "ensembl_havana"; p_id "P45494"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000185127"; transcript_name "RHOX5-001"; transcript_source "havana"; tss_id "TSS35087"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37806074 37806119 . + . exon_id "ENSMUSE00001183952"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097306"; gene_name "RHOX5"; gene_source "ensembl_havana"; p_id "P29729"; transcript_id "ENSMUST00000180893"; transcript_name "RHOX5-201"; transcript_source "ensembl"; tss_id "TSS51602"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37808615 37808764 . + . exon_id "ENSMUSE00001104321"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097306"; gene_name "RHOX5"; gene_source "ensembl_havana"; p_id "P29729"; transcript_id "ENSMUST00000180893"; transcript_name "RHOX5-201"; transcript_source "ensembl"; tss_id "TSS51602"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37808615 37808876 . + . exon_id "ENSMUSE00001314726"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097306"; gene_name "RHOX5"; gene_source "ensembl_havana"; p_id "P45494"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000185127"; transcript_name "RHOX5-001"; transcript_source "havana"; tss_id "TSS35087"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37827360 37827629 . + . exon_id "ENSMUSE00001193601"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097200"; gene_name "RHOX6"; gene_source "ensembl_havana"; p_id "P43073"; transcript_id "ENSMUST00000181916"; transcript_name "RHOX6-001"; transcript_source "ensembl_havana"; tss_id "TSS46609"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37827816 37828275 . + . exon_id "ENSMUSE00001113882"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097200"; gene_name "RHOX6"; gene_source "ensembl_havana"; p_id "P43073"; transcript_id "ENSMUST00000181916"; transcript_name "RHOX6-001"; transcript_source "ensembl_havana"; tss_id "TSS46609"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37828865 37828910 . + . exon_id "ENSMUSE00001185267"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097200"; gene_name "RHOX6"; gene_source "ensembl_havana"; p_id "P43073"; transcript_id "ENSMUST00000181916"; transcript_name "RHOX6-001"; transcript_source "ensembl_havana"; tss_id "TSS46609"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37830074 37830307 . + . exon_id "ENSMUSE00001121837"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097200"; gene_name "RHOX6"; gene_source "ensembl_havana"; p_id "P43073"; transcript_id "ENSMUST00000181916"; transcript_name "RHOX6-001"; transcript_source "ensembl_havana"; tss_id "TSS46609"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37832136 37832215 . + . exon_id "ENSMUSE00001109800"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097600"; gene_name "Rhox7"; gene_source "ensembl_havana"; p_id "P42085"; transcript_id "ENSMUST00000181659"; transcript_name "Rhox7-001"; transcript_source "ensembl_havana"; tss_id "TSS35671"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37833458 37833561 . + . exon_id "ENSMUSE00001148509"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097600"; gene_name "Rhox7"; gene_source "ensembl_havana"; p_id "P42085"; transcript_id "ENSMUST00000181659"; transcript_name "Rhox7-001"; transcript_source "ensembl_havana"; tss_id "TSS35671"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37834682 37834727 . + . exon_id "ENSMUSE00001124372"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097600"; gene_name "Rhox7"; gene_source "ensembl_havana"; p_id "P42085"; transcript_id "ENSMUST00000181659"; transcript_name "Rhox7-001"; transcript_source "ensembl_havana"; tss_id "TSS35671"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37836127 37836196 . + . exon_id "ENSMUSE00001189803"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097600"; gene_name "Rhox7"; gene_source "ensembl_havana"; p_id "P42085"; transcript_id "ENSMUST00000181659"; transcript_name "Rhox7-001"; transcript_source "ensembl_havana"; tss_id "TSS35671"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH nonsense_mediated_decay exon 37838302 37838443 . + . exon_id "ENSMUSE00001314903"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097600"; gene_name "Rhox7"; gene_source "ensembl_havana"; p_id "P21368"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000184819"; transcript_name "Rhox7-002"; transcript_source "havana"; tss_id "TSS88250"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37838602 37838969 . + . exon_id "ENSMUSE00001142437"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097600"; gene_name "Rhox7"; gene_source "ensembl_havana"; p_id "P42085"; transcript_id "ENSMUST00000181659"; transcript_name "Rhox7-001"; transcript_source "ensembl_havana"; tss_id "TSS35671"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37839667 37839818 . + . exon_id "ENSMUSE00001117808"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097600"; gene_name "Rhox7"; gene_source "ensembl_havana"; p_id "P42085"; transcript_id "ENSMUST00000181659"; transcript_name "Rhox7-001"; transcript_source "ensembl_havana"; tss_id "TSS35671"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH nonsense_mediated_decay exon 37840442 37840487 . + . exon_id "ENSMUSE00001315812"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097600"; gene_name "Rhox7"; gene_source "ensembl_havana"; p_id "P21368"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000184819"; transcript_name "Rhox7-002"; transcript_source "havana"; tss_id "TSS88250"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37840442 37840487 . + . exon_id "ENSMUSE00001159633"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097600"; gene_name "Rhox7"; gene_source "ensembl_havana"; p_id "P42085"; transcript_id "ENSMUST00000181659"; transcript_name "Rhox7-001"; transcript_source "ensembl_havana"; tss_id "TSS35671"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37841505 37841621 . + . exon_id "ENSMUSE00001126539"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097600"; gene_name "Rhox7"; gene_source "ensembl_havana"; p_id "P42085"; transcript_id "ENSMUST00000181659"; transcript_name "Rhox7-001"; transcript_source "ensembl_havana"; tss_id "TSS35671"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH nonsense_mediated_decay exon 37841505 37841725 . + . exon_id "ENSMUSE00001317838"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097600"; gene_name "Rhox7"; gene_source "ensembl_havana"; p_id "P21368"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000184819"; transcript_name "Rhox7-002"; transcript_source "havana"; tss_id "TSS88250"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37875228 37875453 . - . exon_id "ENSMUSE00001150372"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097126"; gene_name "RHOX8"; gene_source "ensembl_havana"; p_id "P34803"; transcript_id "ENSMUST00000180817"; transcript_name "RHOX8-001"; transcript_source "ensembl_havana"; tss_id "TSS16801"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37876673 37876718 . - . exon_id "ENSMUSE00001133814"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097126"; gene_name "RHOX8"; gene_source "ensembl_havana"; p_id "P34803"; transcript_id "ENSMUST00000180817"; transcript_name "RHOX8-001"; transcript_source "ensembl_havana"; tss_id "TSS16801"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37878300 37879023 . - . exon_id "ENSMUSE00001105201"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097126"; gene_name "RHOX8"; gene_source "ensembl_havana"; p_id "P34803"; transcript_id "ENSMUST00000180817"; transcript_name "RHOX8-001"; transcript_source "ensembl_havana"; tss_id "TSS16801"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37879187 37879394 . - . exon_id "ENSMUSE00001111896"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097126"; gene_name "RHOX8"; gene_source "ensembl_havana"; p_id "P34803"; transcript_id "ENSMUST00000180817"; transcript_name "RHOX8-001"; transcript_source "ensembl_havana"; tss_id "TSS16801"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37886889 37887113 . - . exon_id "ENSMUSE00001197879"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097270"; gene_name "RP23-202F23.4"; gene_source "havana"; p_id "P46108"; transcript_id "ENSMUST00000181431"; transcript_name "RP23-202F23.4-001"; transcript_source "havana"; tss_id "TSS1942"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37888142 37888187 . - . exon_id "ENSMUSE00001198260"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097270"; gene_name "RP23-202F23.4"; gene_source "havana"; p_id "P46108"; transcript_id "ENSMUST00000181431"; transcript_name "RP23-202F23.4-001"; transcript_source "havana"; tss_id "TSS1942"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37890000 37890151 . - . exon_id "ENSMUSE00001126734"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097270"; gene_name "RP23-202F23.4"; gene_source "havana"; p_id "P46108"; transcript_id "ENSMUST00000181431"; transcript_name "RP23-202F23.4-001"; transcript_source "havana"; tss_id "TSS1942"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37890849 37891216 . - . exon_id "ENSMUSE00001186669"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097270"; gene_name "RP23-202F23.4"; gene_source "havana"; p_id "P46108"; transcript_id "ENSMUST00000181431"; transcript_name "RP23-202F23.4-001"; transcript_source "havana"; tss_id "TSS1942"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37893623 37893692 . - . exon_id "ENSMUSE00001164740"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097270"; gene_name "RP23-202F23.4"; gene_source "havana"; p_id "P46108"; transcript_id "ENSMUST00000181431"; transcript_name "RP23-202F23.4-001"; transcript_source "havana"; tss_id "TSS1942"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37895092 37895137 . - . exon_id "ENSMUSE00001161886"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097270"; gene_name "RP23-202F23.4"; gene_source "havana"; p_id "P46108"; transcript_id "ENSMUST00000181431"; transcript_name "RP23-202F23.4-001"; transcript_source "havana"; tss_id "TSS1942"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37896258 37896361 . - . exon_id "ENSMUSE00001157713"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097270"; gene_name "RP23-202F23.4"; gene_source "havana"; p_id "P46108"; transcript_id "ENSMUST00000181431"; transcript_name "RP23-202F23.4-001"; transcript_source "havana"; tss_id "TSS1942"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37897603 37897682 . - . exon_id "ENSMUSE00001098152"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097270"; gene_name "RP23-202F23.4"; gene_source "havana"; p_id "P46108"; transcript_id "ENSMUST00000181431"; transcript_name "RP23-202F23.4-001"; transcript_source "havana"; tss_id "TSS1942"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37899547 37899749 . - . exon_id "ENSMUSE00001127060"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097436"; gene_name "RHOX9"; gene_source "ensembl_havana"; p_id "P98"; transcript_id "ENSMUST00000181131"; transcript_name "RHOX9-001"; transcript_source "ensembl_havana"; tss_id "TSS62223"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37899547 37901861 . - . exon_id "ENSMUSE00001109506"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097436"; gene_name "RHOX9"; gene_source "ensembl_havana"; p_id "P1197"; transcript_id "ENSMUST00000180665"; transcript_name "RHOX9-002"; transcript_source "havana"; tss_id "TSS7552"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37900730 37900775 . - . exon_id "ENSMUSE00001130135"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097436"; gene_name "RHOX9"; gene_source "ensembl_havana"; p_id "P98"; transcript_id "ENSMUST00000181131"; transcript_name "RHOX9-001"; transcript_source "ensembl_havana"; tss_id "TSS62223"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37901402 37901861 . - . exon_id "ENSMUSE00001147064"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097436"; gene_name "RHOX9"; gene_source "ensembl_havana"; p_id "P98"; transcript_id "ENSMUST00000181131"; transcript_name "RHOX9-001"; transcript_source "ensembl_havana"; tss_id "TSS62223"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37902048 37902146 . - . exon_id "ENSMUSE00001166245"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097436"; gene_name "RHOX9"; gene_source "ensembl_havana"; p_id "P1197"; transcript_id "ENSMUST00000180665"; transcript_name "RHOX9-002"; transcript_source "havana"; tss_id "TSS7552"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37902048 37902317 . - . exon_id "ENSMUSE00001113844"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000097436"; gene_name "RHOX9"; gene_source "ensembl_havana"; p_id "P98"; transcript_id "ENSMUST00000181131"; transcript_name "RHOX9-001"; transcript_source "ensembl_havana"; tss_id "TSS62223"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH unprocessed_pseudogene exon 37932924 37932969 . - . exon_id "ENSMUSE00001106006"; exon_number "2"; gene_biotype "pseudogene"; gene_id "ENSMUSG00000097144"; gene_name "RP23-202F23.7"; gene_source "havana"; transcript_id "ENSMUST00000181583"; transcript_name "RP23-202F23.7-001"; transcript_source "havana"; tss_id "TSS22346"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH unprocessed_pseudogene exon 37933593 37933681 . - . exon_id "ENSMUSE00001142384"; exon_number "1"; gene_biotype "pseudogene"; gene_id "ENSMUSG00000097144"; gene_name "RP23-202F23.7"; gene_source "havana"; transcript_id "ENSMUST00000181583"; transcript_name "RP23-202F23.7-001"; transcript_source "havana"; tss_id "TSS22346"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37941143 37941301 . - . exon_id "ENSMUSE00001316728"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098804"; gene_name "AL590629.1"; gene_source "ensembl"; p_id "P12634"; transcript_id "ENSMUST00000184568"; transcript_name "AL590629.1-201"; transcript_source "ensembl"; tss_id "TSS40760"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH unprocessed_pseudogene exon 37941266 37941301 . - . exon_id "ENSMUSE00001136650"; exon_number "3"; gene_biotype "pseudogene"; gene_id "ENSMUSG00000096928"; gene_name "RP23-202F23.6"; gene_source "havana"; transcript_id "ENSMUST00000181459"; transcript_name "RP23-202F23.6-001"; transcript_source "havana"; tss_id "TSS40760"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH unprocessed_pseudogene exon 37942970 37943015 . - . exon_id "ENSMUSE00001141678"; exon_number "2"; gene_biotype "pseudogene"; gene_id "ENSMUSG00000096928"; gene_name "RP23-202F23.6"; gene_source "havana"; transcript_id "ENSMUST00000181459"; transcript_name "RP23-202F23.6-001"; transcript_source "havana"; tss_id "TSS40760"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37942970 37943015 . - . exon_id "ENSMUSE00001315064"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098804"; gene_name "AL590629.1"; gene_source "ensembl"; p_id "P12634"; transcript_id "ENSMUST00000184568"; transcript_name "AL590629.1-201"; transcript_source "ensembl"; tss_id "TSS40760"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH unprocessed_pseudogene exon 37945684 37946052 . - . exon_id "ENSMUSE00001200922"; exon_number "1"; gene_biotype "pseudogene"; gene_id "ENSMUSG00000096928"; gene_name "RP23-202F23.6"; gene_source "havana"; transcript_id "ENSMUST00000181459"; transcript_name "RP23-202F23.6-001"; transcript_source "havana"; tss_id "TSS40760"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4214_PATCH' not found in Genome fasta files for line: MG4214_PATCH protein_coding exon 37945688 37946052 . - . exon_id "ENSMUSE00001315825"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098804"; gene_name "AL590629.1"; gene_source "ensembl"; p_id "P12634"; transcript_id "ENSMUST00000184568"; transcript_name "AL590629.1-201"; transcript_source "ensembl"; tss_id "TSS40760"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH processed_pseudogene exon 55321587 55321793 . + . exon_id "ENSMUSE00001316842"; exon_number "1"; gene_biotype "pseudogene"; gene_id "ENSMUSG00000098283"; gene_name "AC154679.1"; gene_source "ensembl"; transcript_id "ENSMUST00000183524"; transcript_name "AC154679.1-201"; transcript_source "ensembl"; tss_id "TSS76097"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55445355 55445782 . + . exon_id "ENSMUSE00001316471"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098633"; gene_name "ST6GAL2"; gene_source "ensembl_havana"; p_id "P37659"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000184342"; transcript_name "ST6GAL2-002"; transcript_source "havana"; tss_id "TSS30256"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55445362 55445782 . + . exon_id "ENSMUSE00001313642"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098633"; gene_name "ST6GAL2"; gene_source "ensembl_havana"; p_id "P7459"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000184253"; transcript_name "ST6GAL2-001"; transcript_source "ensembl_havana"; tss_id "TSS46881"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55445523 55445782 . + . exon_id "ENSMUSE00001315913"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098633"; gene_name "ST6GAL2"; gene_source "ensembl_havana"; p_id "P33326"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000183712"; transcript_name "ST6GAL2-003"; transcript_source "havana"; tss_id "TSS65150"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH processed_transcript exon 55446217 55446399 . + . exon_id "ENSMUSE00001314042"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098633"; gene_name "ST6GAL2"; gene_source "ensembl_havana"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000184413"; transcript_name "ST6GAL2-004"; transcript_source "havana"; tss_id "TSS5298"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH processed_transcript exon 55481878 55482341 . + . exon_id "ENSMUSE00001314248"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098633"; gene_name "ST6GAL2"; gene_source "ensembl_havana"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000184413"; transcript_name "ST6GAL2-004"; transcript_source "havana"; tss_id "TSS5298"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55481878 55482867 . + . exon_id "ENSMUSE00001317056"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098633"; gene_name "ST6GAL2"; gene_source "ensembl_havana"; p_id "P33326"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000183712"; transcript_name "ST6GAL2-003"; transcript_source "havana"; tss_id "TSS65150"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55481878 55482867 . + . exon_id "ENSMUSE00001317056"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098633"; gene_name "ST6GAL2"; gene_source "ensembl_havana"; p_id "P7459"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000184253"; transcript_name "ST6GAL2-001"; transcript_source "ensembl_havana"; tss_id "TSS46881"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55481878 55483005 . + . exon_id "ENSMUSE00001317223"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098633"; gene_name "ST6GAL2"; gene_source "ensembl_havana"; p_id "P37659"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000184342"; transcript_name "ST6GAL2-002"; transcript_source "havana"; tss_id "TSS30256"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55490916 55491013 . + . exon_id "ENSMUSE00001317375"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098633"; gene_name "ST6GAL2"; gene_source "ensembl_havana"; p_id "P33326"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000183712"; transcript_name "ST6GAL2-003"; transcript_source "havana"; tss_id "TSS65150"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55490916 55491013 . + . exon_id "ENSMUSE00001317375"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098633"; gene_name "ST6GAL2"; gene_source "ensembl_havana"; p_id "P7459"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000184253"; transcript_name "ST6GAL2-001"; transcript_source "ensembl_havana"; tss_id "TSS46881"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55496265 55496366 . + . exon_id "ENSMUSE00001314115"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098633"; gene_name "ST6GAL2"; gene_source "ensembl_havana"; p_id "P33326"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000183712"; transcript_name "ST6GAL2-003"; transcript_source "havana"; tss_id "TSS65150"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55496265 55496366 . + . exon_id "ENSMUSE00001314115"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098633"; gene_name "ST6GAL2"; gene_source "ensembl_havana"; p_id "P7459"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000184253"; transcript_name "ST6GAL2-001"; transcript_source "ensembl_havana"; tss_id "TSS46881"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55498205 55498379 . + . exon_id "ENSMUSE00001316526"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098633"; gene_name "ST6GAL2"; gene_source "ensembl_havana"; p_id "P33326"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000183712"; transcript_name "ST6GAL2-003"; transcript_source "havana"; tss_id "TSS65150"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55498205 55499199 . + . exon_id "ENSMUSE00001316125"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098633"; gene_name "ST6GAL2"; gene_source "ensembl_havana"; p_id "P7459"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000184253"; transcript_name "ST6GAL2-001"; transcript_source "ensembl_havana"; tss_id "TSS46881"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55510114 55514554 . + . exon_id "ENSMUSE00001315459"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098633"; gene_name "ST6GAL2"; gene_source "ensembl_havana"; p_id "P33326"; tag "mRNA_start_NF"; transcript_id "ENSMUST00000183712"; transcript_name "ST6GAL2-003"; transcript_source "havana"; tss_id "TSS65150"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55592313 55593217 . - . exon_id "ENSMUSE00001317473"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099175"; gene_name "Vmn2r118"; gene_source "ensembl_havana"; p_id "P5583"; transcript_id "ENSMUST00000184305"; transcript_name "Vmn2r118-001"; transcript_source "ensembl_havana"; tss_id "TSS70110"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55607960 55608083 . - . exon_id "ENSMUSE00001316321"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099175"; gene_name "Vmn2r118"; gene_source "ensembl_havana"; p_id "P5583"; transcript_id "ENSMUST00000184305"; transcript_name "Vmn2r118-001"; transcript_source "ensembl_havana"; tss_id "TSS70110"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55608388 55608615 . - . exon_id "ENSMUSE00001314311"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099175"; gene_name "Vmn2r118"; gene_source "ensembl_havana"; p_id "P5583"; transcript_id "ENSMUST00000184305"; transcript_name "Vmn2r118-001"; transcript_source "ensembl_havana"; tss_id "TSS70110"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55610178 55610984 . - . exon_id "ENSMUSE00001316744"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099175"; gene_name "Vmn2r118"; gene_source "ensembl_havana"; p_id "P5583"; transcript_id "ENSMUST00000184305"; transcript_name "Vmn2r118-001"; transcript_source "ensembl_havana"; tss_id "TSS70110"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55611365 55611662 . - . exon_id "ENSMUSE00001316427"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099175"; gene_name "Vmn2r118"; gene_source "ensembl_havana"; p_id "P5583"; transcript_id "ENSMUST00000184305"; transcript_name "Vmn2r118-001"; transcript_source "ensembl_havana"; tss_id "TSS70110"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55624445 55624644 . - . exon_id "ENSMUSE00001313602"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000099175"; gene_name "Vmn2r118"; gene_source "ensembl_havana"; p_id "P5583"; transcript_id "ENSMUST00000184305"; transcript_name "Vmn2r118-001"; transcript_source "ensembl_havana"; tss_id "TSS70110"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55651997 55653490 . - . exon_id "ENSMUSE00001317820"; exon_number "17"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098835"; gene_name "AC182748.1"; gene_source "ensembl"; p_id "P44529"; transcript_id "ENSMUST00000184775"; transcript_name "AC182748.1-201"; transcript_source "ensembl"; tss_id "TSS63793"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55654739 55654844 . - . exon_id "ENSMUSE00001314565"; exon_number "16"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098835"; gene_name "AC182748.1"; gene_source "ensembl"; p_id "P44529"; transcript_id "ENSMUST00000184775"; transcript_name "AC182748.1-201"; transcript_source "ensembl"; tss_id "TSS63793"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH snRNA exon 55661609 55661713 . + . exon_id "ENSMUSE00001317842"; exon_number "1"; gene_biotype "snRNA"; gene_id "ENSMUSG00000098587"; gene_name "U6"; gene_source "ensembl"; transcript_id "ENSMUST00000184569"; transcript_name "U6.5-201"; transcript_source "ensembl"; tss_id "TSS7349"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55662435 55662526 . - . exon_id "ENSMUSE00001315204"; exon_number "15"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098835"; gene_name "AC182748.1"; gene_source "ensembl"; p_id "P44529"; transcript_id "ENSMUST00000184775"; transcript_name "AC182748.1-201"; transcript_source "ensembl"; tss_id "TSS63793"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55664289 55664377 . - . exon_id "ENSMUSE00001315261"; exon_number "14"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098835"; gene_name "AC182748.1"; gene_source "ensembl"; p_id "P44529"; transcript_id "ENSMUST00000184775"; transcript_name "AC182748.1-201"; transcript_source "ensembl"; tss_id "TSS63793"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55665620 55665755 . - . exon_id "ENSMUSE00001316963"; exon_number "13"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098835"; gene_name "AC182748.1"; gene_source "ensembl"; p_id "P44529"; transcript_id "ENSMUST00000184775"; transcript_name "AC182748.1-201"; transcript_source "ensembl"; tss_id "TSS63793"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55666384 55666589 . - . exon_id "ENSMUSE00001314176"; exon_number "12"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098835"; gene_name "AC182748.1"; gene_source "ensembl"; p_id "P44529"; transcript_id "ENSMUST00000184775"; transcript_name "AC182748.1-201"; transcript_source "ensembl"; tss_id "TSS63793"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55669712 55669868 . - . exon_id "ENSMUSE00001314034"; exon_number "11"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098835"; gene_name "AC182748.1"; gene_source "ensembl"; p_id "P44529"; transcript_id "ENSMUST00000184775"; transcript_name "AC182748.1-201"; transcript_source "ensembl"; tss_id "TSS63793"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55672803 55672865 . - . exon_id "ENSMUSE00001317037"; exon_number "10"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098835"; gene_name "AC182748.1"; gene_source "ensembl"; p_id "P44529"; transcript_id "ENSMUST00000184775"; transcript_name "AC182748.1-201"; transcript_source "ensembl"; tss_id "TSS63793"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55674024 55674112 . - . exon_id "ENSMUSE00001315307"; exon_number "9"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098835"; gene_name "AC182748.1"; gene_source "ensembl"; p_id "P44529"; transcript_id "ENSMUST00000184775"; transcript_name "AC182748.1-201"; transcript_source "ensembl"; tss_id "TSS63793"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55687761 55687930 . - . exon_id "ENSMUSE00001314420"; exon_number "8"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098835"; gene_name "AC182748.1"; gene_source "ensembl"; p_id "P44529"; transcript_id "ENSMUST00000184775"; transcript_name "AC182748.1-201"; transcript_source "ensembl"; tss_id "TSS63793"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55692694 55692849 . - . exon_id "ENSMUSE00001317221"; exon_number "7"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098835"; gene_name "AC182748.1"; gene_source "ensembl"; p_id "P44529"; transcript_id "ENSMUST00000184775"; transcript_name "AC182748.1-201"; transcript_source "ensembl"; tss_id "TSS63793"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55694999 55695289 . - . exon_id "ENSMUSE00001314081"; exon_number "6"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098835"; gene_name "AC182748.1"; gene_source "ensembl"; p_id "P44529"; transcript_id "ENSMUST00000184775"; transcript_name "AC182748.1-201"; transcript_source "ensembl"; tss_id "TSS63793"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55698429 55698559 . - . exon_id "ENSMUSE00001315075"; exon_number "5"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098835"; gene_name "AC182748.1"; gene_source "ensembl"; p_id "P44529"; transcript_id "ENSMUST00000184775"; transcript_name "AC182748.1-201"; transcript_source "ensembl"; tss_id "TSS63793"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55699964 55700078 . - . exon_id "ENSMUSE00001316147"; exon_number "4"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098835"; gene_name "AC182748.1"; gene_source "ensembl"; p_id "P44529"; transcript_id "ENSMUST00000184775"; transcript_name "AC182748.1-201"; transcript_source "ensembl"; tss_id "TSS63793"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55706078 55706124 . - . exon_id "ENSMUSE00001317109"; exon_number "3"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098835"; gene_name "AC182748.1"; gene_source "ensembl"; p_id "P44529"; transcript_id "ENSMUST00000184775"; transcript_name "AC182748.1-201"; transcript_source "ensembl"; tss_id "TSS63793"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55710811 55710878 . - . exon_id "ENSMUSE00001313995"; exon_number "2"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098835"; gene_name "AC182748.1"; gene_source "ensembl"; p_id "P44529"; transcript_id "ENSMUST00000184775"; transcript_name "AC182748.1-201"; transcript_source "ensembl"; tss_id "TSS63793"; WARNING: while processing pGe.sjdbGTFfile=genes.gtf: chromosome 'MG4222_MG3908_PATCH' not found in Genome fasta files for line: MG4222_MG3908_PATCH protein_coding exon 55712512 55712600 . - . exon_id "ENSMUSE00001314782"; exon_number "1"; gene_biotype "protein_coding"; gene_id "ENSMUSG00000098835"; gene_name "AC182748.1"; gene_source "ensembl"; p_id "P44529"; transcript_id "ENSMUST00000184775"; transcript_name "AC182748.1-201"; transcript_source "ensembl"; tss_id "TSS63793"; Processing pGe.sjdbGTFfile=genes.gtf, found: 94545 transcripts 626404 exons (non-collapsed) 240582 collapsed junctions Feb 08 21:02:41 ..... finished GTF processing Feb 08 21:02:41 Loaded database junctions from the GTF file: genes.gtf: 240582 total junctions WARNING: long repeat for junction # 169082 : 5 112774527 112775017; left shift = 255; right shift = 69 WARNING: long repeat for junction # 205075 : 7 141808196 141810304; left shift = 255; right shift = 255 Feb 08 21:02:42 Finished preparing junctions Feb 08 21:02:42 ..... inserting junctions into the genome indices Feb 08 21:03:27 Finished SA search: number of new junctions=240490, old junctions=0 Feb 08 21:03:56 Finished sorting SA indicesL nInd=95233584 Genome size with junctions=2776514406 2728656896 47857510 GstrandBit1=32 GstrandBit=32 Feb 08 21:05:12 Finished inserting junction indices Feb 08 21:05:32 Finished SAi Feb 08 21:05:32 ..... finished inserting junctions into genome Feb 08 21:05:32 ... writing Genome to disk ... Writing 2776514406 bytes into GRCm38/Genome ; empty space on disk = 2366474152837120 bytes ... done SA size in bytes: 22235024810 Feb 08 21:06:01 ... writing Suffix Array to disk ... Writing 22235024810 bytes into GRCm38/SA ; empty space on disk = 2366471359430656 bytes ... done Feb 08 21:09:40 ... writing SAindex to disk Writing 8 bytes into GRCm38/SAindex ; empty space on disk = 2366441151004672 bytes ... done Writing 120 bytes into GRCm38/SAindex ; empty space on disk = 2366441151004672 bytes ... done Writing 1565873491 bytes into GRCm38/SAindex ; empty space on disk = 2366441151004672 bytes ... done Feb 08 21:09:59 ..... finished successfully DONE: Genome generation, EXITING