2026-07-01 09:55:23,798 NanoComp 1.18.0 started with arguments Namespace(threads=4, outdir='../report/nanocomp_fastq/', prefix='', verbose=False, raw=False, store=False, tsv_stats=False, no_static=False, readtype='1D', maxlength=None, minlength=None, barcoded=False, split_runs=False, format='png', names=None, colors=None, plot='violin', title=None, dpi=100, fasta=None, fastq=['Acas_rep1_ivt.fastq.gz'], fastq_rich=None, summary=None, bam=None, ubam=None, cram=None, pickle=None, feather=None, path='../report/nanocomp_fastq/')
2026-07-01 09:55:23,798 Python version is: 3.9.23 | packaged by conda-forge | (main, Jun  4 2025, 17:57:12)  [GCC 13.3.0]
2026-07-01 09:55:23,868 Nanoget: Starting to collect statistics from plain fastq file.
2026-07-01 09:55:23,868 Nanoget: Decompressing gzipped fastq Acas_rep1_ivt.fastq.gz
2026-07-01 09:55:24,903 Reduced DataFrame memory usage from 0.1025848388671875Mb to 0.03854560852050781Mb
2026-07-01 09:55:24,913 Nanoget: Gathered all metrics of 6715 reads
2026-07-01 09:55:24,913 Using sequenced read lengths for plotting.
2026-07-01 09:55:24,947 NanoComp: Creating barplots for number of reads and total throughput.
2026-07-01 09:55:40,679 NanoComp 1.18.0 started with arguments Namespace(threads=4, outdir='../report/nanocomp_fastq/', prefix='', verbose=False, raw=False, store=False, tsv_stats=False, no_static=False, readtype='1D', maxlength=None, minlength=None, barcoded=False, split_runs=False, format='png', names=None, colors=None, plot='violin', title=None, dpi=100, fasta=None, fastq=['Acas_rep1_ivt.fastq.gz'], fastq_rich=None, summary=None, bam=None, ubam=None, cram=None, pickle=None, feather=None, path='../report/nanocomp_fastq/')
2026-07-01 09:55:40,679 Python version is: 3.9.23 | packaged by conda-forge | (main, Jun  4 2025, 17:57:12)  [GCC 13.3.0]
2026-07-01 09:55:40,690 Nanoget: Starting to collect statistics from plain fastq file.
2026-07-01 09:55:40,690 Nanoget: Decompressing gzipped fastq Acas_rep1_ivt.fastq.gz
2026-07-01 09:55:40,941 Reduced DataFrame memory usage from 0.1025848388671875Mb to 0.03854560852050781Mb
2026-07-01 09:55:40,949 Nanoget: Gathered all metrics of 6715 reads
2026-07-01 09:55:40,950 Using sequenced read lengths for plotting.
2026-07-01 09:55:40,960 NanoComp: Creating barplots for number of reads and total throughput.
2026-07-01 09:55:55,853 Saved ../report/nanocomp_fastq/NanoComp_number_of_reads  as png (or png for --legacy)
2026-07-01 09:55:58,003 Saved ../report/nanocomp_fastq/NanoComp_total_throughput  as png (or png for --legacy)
2026-07-01 09:55:58,696 Saved ../report/nanocomp_fastq/NanoComp_N50  as png (or png for --legacy)
2026-07-01 09:55:58,699 NanoComp: Creating violin plot for lengths.
2026-07-01 09:55:59,711 Saved ../report/nanocomp_fastq/NanoComp_lengths_violin  as png (or png for --legacy)
2026-07-01 09:55:59,714 NanoComp: Creating violin plot for log length.
2026-07-01 09:56:00,626 Saved ../report/nanocomp_fastq/NanoComp_log_length_violin  as png (or png for --legacy)
2026-07-01 09:56:00,627 NanoComp: Creating violin plot for quals.
2026-07-01 09:56:01,503 Saved ../report/nanocomp_fastq/NanoComp_quals_violin  as png (or png for --legacy)
2026-07-01 09:56:02,581 Saved ../report/nanocomp_fastq/NanoComp_OverlayHistogram  as png (or png for --legacy)
2026-07-01 09:56:03,327 Saved ../report/nanocomp_fastq/NanoComp_OverlayHistogram_Normalized  as png (or png for --legacy)
2026-07-01 09:56:04,239 Saved ../report/nanocomp_fastq/NanoComp_OverlayLogHistogram  as png (or png for --legacy)
2026-07-01 09:56:05,090 Saved ../report/nanocomp_fastq/NanoComp_OverlayLogHistogram_Normalized  as png (or png for --legacy)
2026-07-01 09:56:05,091 Writing html report.
2026-07-01 09:56:05,125 Succesfully processed all input.