2026-07-02 08:21:43,667 NanoComp 1.18.0 started with arguments Namespace(threads=4, outdir='../report/nanocomp_fastq/', prefix='', verbose=False, raw=False, store=False, tsv_stats=False, no_static=False, readtype='1D', maxlength=None, minlength=None, barcoded=False, split_runs=False, format='png', names=None, colors=None, plot='violin', title=None, dpi=100, fasta=None, fastq=['Acas_rep1_ivt.fastq.gz', 'Acas_rep1_native.fastq.gz', 'Atha_rep1_ivt.fastq.gz', 'Atha_rep1_native.fastq.gz', 'Bnat_rep1_ivt.fastq.gz', 'Bnat_rep1_native.fastq.gz', 'Cfra_rep1_ivt.fastq.gz', 'Cfra_rep1_native.fastq.gz', 'Cowc_rep1_ivt.fastq.gz', 'Cowc_rep1_native.fastq.gz', 'Ddis_rep1_ivt.fastq.gz', 'Ddis_rep1_native.fastq.gz', 'Gthe_rep1_ivt.fastq.gz', 'Gthe_rep1_native.fastq.gz', 'Hsap_rep1_ivt.fastq.gz', 'Hsap_rep1_native.fastq.gz', 'Itha_rep1_ivt.fastq.gz', 'Itha_rep1_native.fastq.gz', 'Mlei_rep1_ivt.fastq.gz', 'Mlei_rep1_native.fastq.gz', 'Mmus_rep1_ivt.fastq.gz', 'Mmus_rep1_native.fastq.gz', 'Mpol_rep1_ivt.fastq.gz', 'Mpol_rep1_native.fastq.gz', 'Ngru_rep1_ivt.fastq.gz', 'Ngru_rep1_native.fastq.gz', 'Nvec_rep1_ivt.fastq.gz', 'Nvec_rep1_native.fastq.gz', 'Scer_rep1_ivt.fastq.gz', 'Scer_rep1_native.fastq.gz', 'Scin_rep1_ivt.fastq.gz', 'Scin_rep1_native.fastq.gz', 'Skew_rep1_ivt.fastq.gz', 'Skew_rep1_native.fastq.gz', 'Smic_rep1_ivt.fastq.gz', 'Smic_rep1_native.fastq.gz', 'Spun_rep1_ivt.fastq.gz', 'Spun_rep1_native.fastq.gz', 'Tthe_rep1_ivt.fastq.gz', 'Tthe_rep1_native.fastq.gz'], fastq_rich=None, summary=None, bam=None, ubam=None, cram=None, pickle=None, feather=None, path='../report/nanocomp_fastq/')
2026-07-02 08:21:43,667 Python version is: 3.9.23 | packaged by conda-forge | (main, Jun  4 2025, 17:57:12)  [GCC 13.3.0]
2026-07-02 08:21:43,739 Nanoget: Starting to collect statistics from plain fastq file.
2026-07-02 08:21:43,739 Nanoget: Starting to collect statistics from plain fastq file.
2026-07-02 08:21:43,740 Nanoget: Decompressing gzipped fastq Acas_rep1_ivt.fastq.gz
2026-07-02 08:21:43,740 Nanoget: Starting to collect statistics from plain fastq file.
2026-07-02 08:21:43,740 Nanoget: Decompressing gzipped fastq Acas_rep1_native.fastq.gz
2026-07-02 08:21:43,740 Nanoget: Starting to collect statistics from plain fastq file.
2026-07-02 08:21:43,741 Nanoget: Decompressing gzipped fastq Atha_rep1_native.fastq.gz
2026-07-02 08:21:43,741 Nanoget: Decompressing gzipped fastq Atha_rep1_ivt.fastq.gz
2026-07-02 08:22:12,720 Reduced DataFrame memory usage from 2.559051513671875Mb to 1.2795867919921875Mb
2026-07-02 08:22:12,727 Nanoget: Starting to collect statistics from plain fastq file.
2026-07-02 08:22:12,731 Nanoget: Decompressing gzipped fastq Bnat_rep1_ivt.fastq.gz
2026-07-02 08:22:18,706 Reduced DataFrame memory usage from 2.545928955078125Mb to 1.2730255126953125Mb
2026-07-02 08:22:18,729 Nanoget: Starting to collect statistics from plain fastq file.
2026-07-02 08:22:18,734 Nanoget: Decompressing gzipped fastq Bnat_rep1_native.fastq.gz
2026-07-02 08:22:26,283 Reduced DataFrame memory usage from 1.455352783203125Mb to 0.7277374267578125Mb
2026-07-02 08:22:26,304 Nanoget: Starting to collect statistics from plain fastq file.
2026-07-02 08:22:26,307 Nanoget: Decompressing gzipped fastq Cfra_rep1_ivt.fastq.gz
2026-07-02 08:22:31,383 Reduced DataFrame memory usage from 4.4648284912109375Mb to 2.2324752807617188Mb
2026-07-02 08:22:31,399 Nanoget: Starting to collect statistics from plain fastq file.
2026-07-02 08:22:31,405 Nanoget: Decompressing gzipped fastq Cfra_rep1_native.fastq.gz
2026-07-02 08:22:35,059 Reduced DataFrame memory usage from 1.51019287109375Mb to 0.755157470703125Mb
2026-07-02 08:22:35,061 Nanoget: Starting to collect statistics from plain fastq file.
2026-07-02 08:22:35,064 Nanoget: Decompressing gzipped fastq Cowc_rep1_ivt.fastq.gz
2026-07-02 08:22:38,170 Reduced DataFrame memory usage from 3.4736175537109375Mb to 1.7368698120117188Mb
2026-07-02 08:22:38,194 Nanoget: Starting to collect statistics from plain fastq file.
2026-07-02 08:22:38,198 Nanoget: Decompressing gzipped fastq Cowc_rep1_native.fastq.gz
2026-07-02 08:22:44,402 Reduced DataFrame memory usage from 1.7562255859375Mb to 0.878173828125Mb
2026-07-02 08:22:44,416 Nanoget: Starting to collect statistics from plain fastq file.
2026-07-02 08:22:44,420 Nanoget: Decompressing gzipped fastq Ddis_rep1_ivt.fastq.gz
2026-07-02 08:22:59,644 Reduced DataFrame memory usage from 1.50677490234375Mb to 0.753448486328125Mb
2026-07-02 08:22:59,660 Nanoget: Starting to collect statistics from plain fastq file.
2026-07-02 08:22:59,665 Nanoget: Decompressing gzipped fastq Ddis_rep1_native.fastq.gz
2026-07-02 08:23:07,588 Reduced DataFrame memory usage from 3.064849853515625Mb to 1.5324859619140625Mb
2026-07-02 08:23:07,613 Nanoget: Starting to collect statistics from plain fastq file.
2026-07-02 08:23:07,617 Nanoget: Decompressing gzipped fastq Gthe_rep1_ivt.fastq.gz
2026-07-02 08:23:33,976 Reduced DataFrame memory usage from 4.94525146484375Mb to 2.472686767578125Mb
2026-07-02 08:23:34,001 Nanoget: Starting to collect statistics from plain fastq file.
2026-07-02 08:23:34,008 Nanoget: Decompressing gzipped fastq Gthe_rep1_native.fastq.gz
2026-07-02 08:23:51,577 Reduced DataFrame memory usage from 4.438018798828125Mb to 2.2190704345703125Mb
2026-07-02 08:23:51,608 Nanoget: Starting to collect statistics from plain fastq file.
2026-07-02 08:23:51,614 Nanoget: Decompressing gzipped fastq Hsap_rep1_ivt.fastq.gz
2026-07-02 08:23:54,995 Reduced DataFrame memory usage from 1.827362060546875Mb to 0.9137420654296875Mb
2026-07-02 08:23:55,017 Nanoget: Starting to collect statistics from plain fastq file.
2026-07-02 08:23:55,018 Nanoget: Decompressing gzipped fastq Hsap_rep1_native.fastq.gz
2026-07-02 08:24:35,371 Reduced DataFrame memory usage from 4.2657012939453125Mb to 2.1329116821289062Mb
2026-07-02 08:24:35,389 Nanoget: Starting to collect statistics from plain fastq file.
2026-07-02 08:24:35,398 Nanoget: Decompressing gzipped fastq Itha_rep1_ivt.fastq.gz
2026-07-02 08:24:48,452 Reduced DataFrame memory usage from 4.5924072265625Mb to 2.2962646484375Mb
2026-07-02 08:24:48,470 Nanoget: Starting to collect statistics from plain fastq file.
2026-07-02 08:24:48,476 Nanoget: Decompressing gzipped fastq Itha_rep1_native.fastq.gz
2026-07-02 08:24:53,746 Reduced DataFrame memory usage from 1.6192626953125Mb to 0.8096923828125Mb
2026-07-02 08:24:53,773 Nanoget: Starting to collect statistics from plain fastq file.
2026-07-02 08:24:53,779 Nanoget: Decompressing gzipped fastq Mlei_rep1_ivt.fastq.gz
2026-07-02 08:24:55,811 Reduced DataFrame memory usage from 3.1316986083984375Mb to 1.5659103393554688Mb
2026-07-02 08:24:55,819 Nanoget: Starting to collect statistics from plain fastq file.
2026-07-02 08:24:55,824 Nanoget: Decompressing gzipped fastq Mlei_rep1_native.fastq.gz
2026-07-02 08:25:12,299 Reduced DataFrame memory usage from 1.979583740234375Mb to 0.9898529052734375Mb
2026-07-02 08:25:12,319 Nanoget: Starting to collect statistics from plain fastq file.
2026-07-02 08:25:12,324 Nanoget: Decompressing gzipped fastq Mmus_rep1_ivt.fastq.gz
2026-07-02 08:25:39,216 Reduced DataFrame memory usage from 3.326446533203125Mb to 1.6632843017578125Mb
2026-07-02 08:25:39,233 Nanoget: Starting to collect statistics from plain fastq file.
2026-07-02 08:25:39,243 Nanoget: Decompressing gzipped fastq Mmus_rep1_native.fastq.gz
2026-07-02 08:25:43,699 Reduced DataFrame memory usage from 7.5117950439453125Mb to 3.7559585571289062Mb
2026-07-02 08:25:43,730 Nanoget: Starting to collect statistics from plain fastq file.
2026-07-02 08:25:43,736 Nanoget: Decompressing gzipped fastq Mpol_rep1_ivt.fastq.gz
2026-07-02 08:25:57,876 Reduced DataFrame memory usage from 4.6934661865234375Mb to 2.3467941284179688Mb
2026-07-02 08:25:57,901 Nanoget: Starting to collect statistics from plain fastq file.
2026-07-02 08:25:57,905 Nanoget: Decompressing gzipped fastq Mpol_rep1_native.fastq.gz
2026-07-02 08:25:58,226 Reduced DataFrame memory usage from 3.4289703369140625Mb to 1.7145462036132812Mb
2026-07-02 08:25:58,238 Nanoget: Starting to collect statistics from plain fastq file.
2026-07-02 08:25:58,244 Nanoget: Decompressing gzipped fastq Ngru_rep1_ivt.fastq.gz
2026-07-02 08:26:10,229 Nanoget: Starting to collect statistics from plain fastq file.
2026-07-02 08:26:10,230 Nanoget: Decompressing gzipped fastq Ngru_rep1_native.fastq.gz
2026-07-02 08:26:10,230 Nanoget: Starting to collect statistics from plain fastq file.
2026-07-02 08:26:10,230 Nanoget: Decompressing gzipped fastq Nvec_rep1_ivt.fastq.gz
2026-07-02 08:26:10,302 Nanoget: Starting to collect statistics from plain fastq file.
2026-07-02 08:26:10,302 Nanoget: Starting to collect statistics from plain fastq file.
2026-07-02 08:26:10,303 Nanoget: Decompressing gzipped fastq Nvec_rep1_native.fastq.gz
2026-07-02 08:26:10,303 Nanoget: Decompressing gzipped fastq Scer_rep1_ivt.fastq.gz