[M::mm_idx_gen::69.759*0.99] collected minimizers
[M::mm_idx_gen::123.233*0.99] sorted minimizers
[M::main::123.233*0.99] loaded/built the index for 993 target sequence(s)
[M::mm_mapopt_update::123.777*0.99] mid_occ = 2799
[M::mm_idx_stat] kmer size: 13; skip: 5; is_hpc: 0; #seq: 993
[M::mm_idx_stat::123.962*0.99] distinct minimizers: 19647024 (16.73% are singletons); average occurrences: 24.128; average spacing: 2.897
[M::worker_pipeline::181.466*0.99] mapped 4000 sequences
[M::worker_pipeline::234.828*0.99] mapped 4000 sequences
[M::worker_pipeline::291.914*0.99] mapped 4000 sequences
[M::worker_pipeline::341.581*0.99] mapped 4000 sequences
[M::worker_pipeline::393.851*0.99] mapped 4000 sequences
[M::worker_pipeline::443.182*0.99] mapped 4000 sequences
[M::worker_pipeline::491.568*0.99] mapped 4000 sequences
[M::worker_pipeline::542.452*0.99] mapped 4000 sequences
[M::worker_pipeline::596.214*0.99] mapped 4000 sequences
[M::worker_pipeline::651.148*0.99] mapped 4000 sequences
[M::worker_pipeline::699.962*1.00] mapped 4000 sequences
[M::worker_pipeline::751.201*1.00] mapped 4000 sequences
[M::worker_pipeline::799.622*1.00] mapped 4000 sequences
[M::worker_pipeline::851.187*0.99] mapped 4000 sequences
[M::worker_pipeline::906.656*1.00] mapped 4000 sequences
[M::worker_pipeline::958.236*1.00] mapped 4000 sequences
[M::worker_pipeline::1008.534*1.00] mapped 4000 sequences
[M::worker_pipeline::1065.320*1.00] mapped 4000 sequences
[M::worker_pipeline::1115.826*1.00] mapped 4000 sequences
[M::worker_pipeline::1171.373*1.00] mapped 4000 sequences
[M::worker_pipeline::1223.863*1.00] mapped 4000 sequences
[M::worker_pipeline::1285.601*1.00] mapped 4000 sequences
[M::worker_pipeline::1344.884*1.00] mapped 4000 sequences
[M::worker_pipeline::1397.922*1.00] mapped 4000 sequences
[M::worker_pipeline::1448.146*1.00] mapped 4000 sequences
[M::worker_pipeline::1500.757*1.00] mapped 4000 sequences
[M::worker_pipeline::1549.508*1.00] mapped 4000 sequences
[M::worker_pipeline::1604.345*1.00] mapped 4000 sequences
[M::worker_pipeline::1657.725*1.00] mapped 4000 sequences
[M::worker_pipeline::1742.757*1.00] mapped 4000 sequences
[M::worker_pipeline::1791.538*1.00] mapped 4000 sequences
[M::worker_pipeline::1855.226*1.00] mapped 4000 sequences
[M::worker_pipeline::1911.039*1.00] mapped 4000 sequences
[M::worker_pipeline::1963.656*1.00] mapped 4000 sequences
[M::worker_pipeline::2018.505*1.00] mapped 4000 sequences
[M::worker_pipeline::2073.570*1.00] mapped 4000 sequences
[M::worker_pipeline::2124.156*1.00] mapped 4000 sequences
[M::worker_pipeline::2175.386*1.00] mapped 4000 sequences
[M::worker_pipeline::2225.602*1.00] mapped 4000 sequences
[M::worker_pipeline::2275.822*1.00] mapped 4000 sequences
[M::worker_pipeline::2326.145*1.00] mapped 3526 sequences
[M::worker_pipeline::2370.577*1.00] mapped 3155 sequences
[M::worker_pipeline::2424.848*1.00] mapped 4000 sequences
[M::worker_pipeline::2480.920*1.00] mapped 4000 sequences
[M::worker_pipeline::2535.015*1.00] mapped 4000 sequences
[M::worker_pipeline::2584.227*1.00] mapped 4000 sequences
[M::worker_pipeline::2636.185*1.00] mapped 4000 sequences
[M::main] Version: 2.17-r941
[M::main] CMD: minimap2 -t6 -axsplice -k13 /no_backup_isis/enovoa/reference_fasta/zebrafish/reference/Danio_rerio.GRCz11.dna_sm.primary_assembly.fa /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch0.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch1.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch10.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch11.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch12.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch13.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch14.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch15.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch16.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch17.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch18.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch19.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch2.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch20.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch21.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch22.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch23.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch24.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch25.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch26.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch27.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch28.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch29.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch3.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch30.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch31.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch32.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch33.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch34.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch35.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch36.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch37.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch38.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch39.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch4.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch40.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch41.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch42.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch43.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch44.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch45.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch46.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch5.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch6.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch7.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch8.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep2/batch9.fast5.fastm.gz
[M::main] Real time: 2636.374 sec; CPU: 2624.858 sec; Peak RSS: 8.885 GB