[M::mm_idx_gen::68.178*0.99] collected minimizers
[M::mm_idx_gen::121.389*0.99] sorted minimizers
[M::main::121.389*0.99] loaded/built the index for 993 target sequence(s)
[M::mm_mapopt_update::121.947*0.99] mid_occ = 2799
[M::mm_idx_stat] kmer size: 13; skip: 5; is_hpc: 0; #seq: 993
[M::mm_idx_stat::122.129*0.99] distinct minimizers: 19647024 (16.73% are singletons); average occurrences: 24.128; average spacing: 2.897
[M::worker_pipeline::169.498*0.99] mapped 4000 sequences
[M::worker_pipeline::219.673*0.99] mapped 4000 sequences
[M::worker_pipeline::269.490*0.99] mapped 4000 sequences
[M::worker_pipeline::316.246*0.99] mapped 4000 sequences
[M::worker_pipeline::366.677*0.99] mapped 4000 sequences
[M::worker_pipeline::415.746*0.99] mapped 4000 sequences
[M::worker_pipeline::468.232*0.99] mapped 4000 sequences
[M::worker_pipeline::516.905*0.99] mapped 4000 sequences
[M::worker_pipeline::572.739*0.99] mapped 4000 sequences
[M::worker_pipeline::619.990*0.99] mapped 4000 sequences
[M::worker_pipeline::666.375*0.99] mapped 4000 sequences
[M::worker_pipeline::715.460*0.99] mapped 4000 sequences
[M::worker_pipeline::763.159*0.99] mapped 4000 sequences
[M::worker_pipeline::809.229*0.99] mapped 4000 sequences
[M::worker_pipeline::856.191*1.00] mapped 4000 sequences
[M::worker_pipeline::902.378*1.00] mapped 4000 sequences
[M::worker_pipeline::948.493*1.00] mapped 4000 sequences
[M::worker_pipeline::996.932*1.00] mapped 4000 sequences
[M::worker_pipeline::1045.528*1.00] mapped 4000 sequences
[M::worker_pipeline::1092.911*1.00] mapped 4000 sequences
[M::worker_pipeline::1140.909*1.00] mapped 4000 sequences
[M::worker_pipeline::1191.408*1.00] mapped 4000 sequences
[M::worker_pipeline::1262.888*1.00] mapped 4000 sequences
[M::worker_pipeline::1313.793*1.00] mapped 4000 sequences
[M::worker_pipeline::1461.586*1.00] mapped 4000 sequences
[M::worker_pipeline::1508.674*1.00] mapped 4000 sequences
[M::worker_pipeline::1553.653*1.00] mapped 4000 sequences
[M::worker_pipeline::1602.589*1.00] mapped 4000 sequences
[M::worker_pipeline::1649.132*1.00] mapped 4000 sequences
[M::worker_pipeline::1705.033*1.00] mapped 4000 sequences
[M::worker_pipeline::1771.355*1.00] mapped 4000 sequences
[M::worker_pipeline::1822.450*1.00] mapped 4000 sequences
[M::worker_pipeline::1889.400*1.00] mapped 4000 sequences
[M::worker_pipeline::1934.906*1.00] mapped 4000 sequences
[M::worker_pipeline::1981.776*1.00] mapped 4000 sequences
[M::worker_pipeline::2027.279*1.00] mapped 4000 sequences
[M::worker_pipeline::2074.105*1.00] mapped 4000 sequences
[M::worker_pipeline::2118.725*1.00] mapped 4000 sequences
[M::worker_pipeline::2166.408*1.00] mapped 4000 sequences
[M::worker_pipeline::2220.421*1.00] mapped 4000 sequences
[M::worker_pipeline::2245.732*1.00] mapped 2114 sequences
[M::worker_pipeline::2278.950*1.00] mapped 2571 sequences
[M::worker_pipeline::2326.306*1.00] mapped 4000 sequences
[M::worker_pipeline::2373.035*1.00] mapped 4000 sequences
[M::worker_pipeline::2427.427*1.00] mapped 4000 sequences
[M::worker_pipeline::2480.334*1.00] mapped 4000 sequences
[M::worker_pipeline::2535.250*1.00] mapped 4000 sequences
[M::main] Version: 2.17-r941
[M::main] CMD: minimap2 -t6 -axsplice -k13 /no_backup_isis/enovoa/reference_fasta/zebrafish/reference/Danio_rerio.GRCz11.dna_sm.primary_assembly.fa /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch0.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch1.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch10.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch11.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch12.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch13.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch14.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch15.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch16.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch17.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch18.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch19.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch2.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch20.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch21.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch22.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch23.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch24.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch25.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch26.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch27.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch28.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch29.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch3.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch30.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch31.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch32.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch33.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch34.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch35.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch36.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch37.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch38.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch39.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch4.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch40.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch41.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch42.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch43.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch44.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch45.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch46.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch5.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch6.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch7.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch8.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_6hpf_rep1/batch9.fast5.fastm.gz
[M::main] Real time: 2535.423 sec; CPU: 2524.909 sec; Peak RSS: 9.152 GB