[M::mm_idx_gen::72.987*0.99] collected minimizers
[M::mm_idx_gen::127.321*0.99] sorted minimizers
[M::main::127.321*0.99] loaded/built the index for 993 target sequence(s)
[M::mm_mapopt_update::127.875*0.99] mid_occ = 2799
[M::mm_idx_stat] kmer size: 13; skip: 5; is_hpc: 0; #seq: 993
[M::mm_idx_stat::128.064*0.99] distinct minimizers: 19647024 (16.73% are singletons); average occurrences: 24.128; average spacing: 2.897
[M::worker_pipeline::190.126*0.99] mapped 4000 sequences
[M::worker_pipeline::252.127*0.99] mapped 4000 sequences
[M::worker_pipeline::311.323*0.99] mapped 4000 sequences
[M::worker_pipeline::369.025*0.99] mapped 4000 sequences
[M::worker_pipeline::426.658*0.99] mapped 4000 sequences
[M::worker_pipeline::484.974*0.99] mapped 4000 sequences
[M::worker_pipeline::547.224*0.99] mapped 4000 sequences
[M::worker_pipeline::606.769*1.00] mapped 4000 sequences
[M::worker_pipeline::670.024*1.00] mapped 4000 sequences
[M::worker_pipeline::729.812*1.00] mapped 4000 sequences
[M::worker_pipeline::787.075*1.00] mapped 4000 sequences
[M::worker_pipeline::843.846*1.00] mapped 4000 sequences
[M::worker_pipeline::902.801*1.00] mapped 4000 sequences
[M::worker_pipeline::971.099*1.00] mapped 4000 sequences
[M::worker_pipeline::1033.887*1.00] mapped 4000 sequences
[M::worker_pipeline::1089.721*1.00] mapped 4000 sequences
[M::worker_pipeline::1147.075*1.00] mapped 4000 sequences
[M::worker_pipeline::1207.651*1.00] mapped 4000 sequences
[M::worker_pipeline::1264.940*1.00] mapped 4000 sequences
[M::worker_pipeline::1330.335*1.00] mapped 4000 sequences
[M::worker_pipeline::1388.947*1.00] mapped 4000 sequences
[M::worker_pipeline::1449.384*1.00] mapped 4000 sequences
[M::worker_pipeline::1507.487*1.00] mapped 4000 sequences
[M::worker_pipeline::1571.406*1.00] mapped 4000 sequences
[M::worker_pipeline::1629.979*1.00] mapped 4000 sequences
[M::worker_pipeline::1688.768*1.00] mapped 4000 sequences
[M::worker_pipeline::1757.440*1.00] mapped 4000 sequences
[M::worker_pipeline::1819.160*1.00] mapped 4000 sequences
[M::worker_pipeline::1875.272*1.00] mapped 4000 sequences
[M::worker_pipeline::1928.534*1.00] mapped 4000 sequences
[M::worker_pipeline::1998.711*1.00] mapped 4000 sequences
[M::worker_pipeline::2065.801*1.00] mapped 4000 sequences
[M::worker_pipeline::2126.181*1.00] mapped 4000 sequences
[M::worker_pipeline::2186.129*1.00] mapped 4000 sequences
[M::worker_pipeline::2244.888*1.00] mapped 4000 sequences
[M::worker_pipeline::2306.386*1.00] mapped 4000 sequences
[M::worker_pipeline::2367.813*1.00] mapped 4000 sequences
[M::worker_pipeline::2428.573*1.00] mapped 4000 sequences
[M::worker_pipeline::2486.462*1.00] mapped 4000 sequences
[M::worker_pipeline::2540.443*1.00] mapped 4000 sequences
[M::worker_pipeline::2599.656*1.00] mapped 4000 sequences
[M::worker_pipeline::2657.542*1.00] mapped 4000 sequences
[M::worker_pipeline::2713.267*1.00] mapped 4000 sequences
[M::worker_pipeline::2769.633*1.00] mapped 4000 sequences
[M::worker_pipeline::2827.954*1.00] mapped 4000 sequences
[M::worker_pipeline::2888.518*1.00] mapped 4000 sequences
[M::worker_pipeline::2945.222*1.00] mapped 4000 sequences
[M::worker_pipeline::3003.543*1.00] mapped 4000 sequences
[M::worker_pipeline::3056.966*1.00] mapped 4000 sequences
[M::worker_pipeline::3114.636*1.00] mapped 4000 sequences
[M::worker_pipeline::3170.333*1.00] mapped 4000 sequences
[M::worker_pipeline::3229.400*1.00] mapped 4000 sequences
[M::worker_pipeline::3289.936*1.00] mapped 4000 sequences
[M::worker_pipeline::3345.121*1.00] mapped 4000 sequences
[M::worker_pipeline::3398.275*1.00] mapped 4000 sequences
[M::worker_pipeline::3460.603*1.00] mapped 4000 sequences
[M::worker_pipeline::3513.734*1.00] mapped 4000 sequences
[M::worker_pipeline::3572.339*1.00] mapped 4000 sequences
[M::worker_pipeline::3626.217*1.00] mapped 4000 sequences
[M::worker_pipeline::3685.083*1.00] mapped 4000 sequences
[M::worker_pipeline::3740.439*1.00] mapped 3900 sequences
[M::worker_pipeline::3786.949*1.00] mapped 3087 sequences
[M::worker_pipeline::3833.916*1.00] mapped 3168 sequences
[M::worker_pipeline::3875.234*1.00] mapped 2961 sequences
[M::worker_pipeline::3923.309*1.00] mapped 3417 sequences
[M::worker_pipeline::3986.409*1.00] mapped 4000 sequences
[M::worker_pipeline::4039.900*1.00] mapped 4000 sequences
[M::worker_pipeline::4095.923*1.00] mapped 4000 sequences
[M::main] Version: 2.17-r941
[M::main] CMD: minimap2 -t6 -axsplice -k13 /no_backup_isis/enovoa/reference_fasta/zebrafish/reference/Danio_rerio.GRCz11.dna_sm.primary_assembly.fa /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch0.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch1.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch10.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch11.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch12.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch13.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch14.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch15.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch16.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch17.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch18.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch19.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch2.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch20.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch21.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch22.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch23.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch24.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch25.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch26.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch27.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch28.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch29.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch3.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch30.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch31.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch32.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch33.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch34.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch35.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch36.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch37.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch38.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch39.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch4.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch40.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch41.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch42.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch43.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch44.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch45.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch46.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch47.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch48.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch49.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch5.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch50.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch51.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch52.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch53.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch54.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch55.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch56.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch57.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch58.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch59.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch6.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch60.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch61.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch62.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch63.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch64.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch65.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch66.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch67.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch7.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch8.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep2/batch9.fast5.fastm.gz
[M::main] Real time: 4096.087 sec; CPU: 4079.739 sec; Peak RSS: 8.885 GB