[M::mm_idx_gen::77.211*0.97] collected minimizers
[M::mm_idx_gen::132.236*0.98] sorted minimizers
[M::main::132.237*0.98] loaded/built the index for 993 target sequence(s)
[M::mm_mapopt_update::132.717*0.98] mid_occ = 2799
[M::mm_idx_stat] kmer size: 13; skip: 5; is_hpc: 0; #seq: 993
[M::mm_idx_stat::132.903*0.98] distinct minimizers: 19647024 (16.73% are singletons); average occurrences: 24.128; average spacing: 2.897
[M::worker_pipeline::190.706*0.99] mapped 4000 sequences
[M::worker_pipeline::248.440*0.99] mapped 4000 sequences
[M::worker_pipeline::300.770*0.99] mapped 4000 sequences
[M::worker_pipeline::361.113*0.99] mapped 4000 sequences
[M::worker_pipeline::419.651*0.99] mapped 4000 sequences
[M::worker_pipeline::473.996*0.99] mapped 4000 sequences
[M::worker_pipeline::531.719*0.99] mapped 4000 sequences
[M::worker_pipeline::588.589*0.99] mapped 4000 sequences
[M::worker_pipeline::644.766*0.99] mapped 4000 sequences
[M::worker_pipeline::702.947*0.99] mapped 4000 sequences
[M::worker_pipeline::760.301*0.99] mapped 4000 sequences
[M::worker_pipeline::817.240*0.99] mapped 4000 sequences
[M::worker_pipeline::874.352*0.99] mapped 4000 sequences
[M::worker_pipeline::930.782*0.99] mapped 4000 sequences
[M::worker_pipeline::983.051*0.99] mapped 4000 sequences
[M::worker_pipeline::1041.108*0.99] mapped 4000 sequences
[M::worker_pipeline::1099.107*0.99] mapped 4000 sequences
[M::worker_pipeline::1159.576*0.99] mapped 4000 sequences
[M::worker_pipeline::1212.242*0.99] mapped 4000 sequences
[M::worker_pipeline::1268.980*0.99] mapped 4000 sequences
[M::worker_pipeline::1327.257*0.99] mapped 4000 sequences
[M::worker_pipeline::1380.157*0.99] mapped 4000 sequences
[M::worker_pipeline::1437.206*0.99] mapped 4000 sequences
[M::worker_pipeline::1494.343*0.99] mapped 4000 sequences
[M::worker_pipeline::1550.934*0.99] mapped 4000 sequences
[M::worker_pipeline::1607.182*0.99] mapped 4000 sequences
[M::worker_pipeline::1665.779*0.99] mapped 4000 sequences
[M::worker_pipeline::1720.184*0.99] mapped 4000 sequences
[M::worker_pipeline::1772.577*0.99] mapped 4000 sequences
[M::worker_pipeline::1827.494*0.99] mapped 4000 sequences
[M::worker_pipeline::1887.423*0.99] mapped 4000 sequences
[M::worker_pipeline::1945.750*0.99] mapped 4000 sequences
[M::worker_pipeline::2016.641*0.99] mapped 4000 sequences
[M::worker_pipeline::2073.558*0.99] mapped 4000 sequences
[M::worker_pipeline::2137.640*1.00] mapped 4000 sequences
[M::worker_pipeline::2193.841*1.00] mapped 4000 sequences
[M::worker_pipeline::2252.417*1.00] mapped 4000 sequences
[M::worker_pipeline::2307.281*1.00] mapped 4000 sequences
[M::worker_pipeline::2359.555*1.00] mapped 4000 sequences
[M::worker_pipeline::2408.442*1.00] mapped 4000 sequences
[M::worker_pipeline::2468.597*1.00] mapped 4000 sequences
[M::worker_pipeline::2526.485*1.00] mapped 4000 sequences
[M::worker_pipeline::2585.720*1.00] mapped 4000 sequences
[M::worker_pipeline::2640.715*1.00] mapped 4000 sequences
[M::worker_pipeline::2689.313*1.00] mapped 4000 sequences
[M::worker_pipeline::2745.756*1.00] mapped 4000 sequences
[M::worker_pipeline::2801.893*1.00] mapped 4000 sequences
[M::worker_pipeline::2856.919*1.00] mapped 4000 sequences
[M::worker_pipeline::2913.663*1.00] mapped 4000 sequences
[M::worker_pipeline::2968.571*1.00] mapped 4000 sequences
[M::worker_pipeline::3023.604*1.00] mapped 4000 sequences
[M::worker_pipeline::3080.138*1.00] mapped 4000 sequences
[M::worker_pipeline::3137.343*1.00] mapped 4000 sequences
[M::worker_pipeline::3191.383*1.00] mapped 4000 sequences
[M::worker_pipeline::3244.430*1.00] mapped 4000 sequences
[M::worker_pipeline::3296.897*1.00] mapped 4000 sequences
[M::worker_pipeline::3346.576*1.00] mapped 4000 sequences
[M::worker_pipeline::3399.786*1.00] mapped 4000 sequences
[M::worker_pipeline::3456.036*1.00] mapped 4000 sequences
[M::worker_pipeline::3510.745*1.00] mapped 4000 sequences
[M::worker_pipeline::3566.473*1.00] mapped 4000 sequences
[M::worker_pipeline::3624.116*1.00] mapped 4000 sequences
[M::worker_pipeline::3680.113*1.00] mapped 4000 sequences
[M::worker_pipeline::3733.555*1.00] mapped 3937 sequences
[M::worker_pipeline::3790.450*1.00] mapped 4000 sequences
[M::worker_pipeline::3847.276*1.00] mapped 4000 sequences
[M::worker_pipeline::3902.076*1.00] mapped 4000 sequences
[M::worker_pipeline::3957.810*1.00] mapped 4000 sequences
[M::main] Version: 2.17-r941
[M::main] CMD: minimap2 -t6 -axsplice -k13 /no_backup_isis/enovoa/reference_fasta/zebrafish/reference/Danio_rerio.GRCz11.dna_sm.primary_assembly.fa /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch0.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch1.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch10.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch11.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch12.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch13.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch14.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch15.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch16.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch17.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch18.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch19.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch2.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch20.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch21.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch22.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch23.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch24.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch25.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch26.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch27.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch28.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch29.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch3.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch30.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch31.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch32.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch33.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch34.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch35.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch36.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch37.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch38.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch39.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch4.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch40.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch41.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch42.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch43.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch44.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch45.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch46.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch47.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch48.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch49.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch5.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch50.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch51.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch52.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch53.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch54.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch55.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch56.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch57.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch58.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch59.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch6.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch60.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch61.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch62.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch63.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch64.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch65.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch66.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch67.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch7.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch8.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/Zebrafish/ModPhred_Analysis/reads/WT_2hpf_rep1/batch9.fast5.fastm.gz
[M::main] Real time: 3958.005 sec; CPU: 3939.558 sec; Peak RSS: 8.885 GB